| PT | Enrich | Tandem genes | ATgene | Description | GO | Scattered genes | Gene number |
Tandem clusters number |
Latin name | Common name | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TA1:Ro02_G21493,Ro02_G35674,Ro02_G35672,Ro02_G35673,Ro02_G35675,Ro02_G35669,Ro02_G35666,Ro02_G35667,Ro02_G35670,Ro02_G35664,Ro02_G35665,Ro02_G35668,Ro02_G35683,Ro02_G35690,Ro02_G35685,Ro02_G35691,Ro02_G35694,Ro02_G35689,Ro02_G35686,Ro02_G35688,Ro02_G35692,Ro02_G35682,Ro02_G21652;TA501:Ro05_G30927,Ro05_G30929,Ro05_G30928;TA35:Ro03_G33228,Ro03_G33227,Ro03_G10532,Ro03_G10533,Ro03_G10535,Ro03_G33230,Ro03_G10536,Ro03_G10538;TA3:Ro03_G32695,Ro03_G18096,Ro03_G32694,Ro03_G32732,Ro03_G32730,Ro03_G32729,Ro03_G32733,Ro03_G32731,Ro03_G32817,Ro03_G32812,Ro03_G32810,Ro03_G32728,Ro03_G32818,Ro03_G32814,Ro03_G32813,Ro03_G32811,Ro03_G32815,Ro03_G32819;TA47:Ro03_G32949,Ro03_G32951,Ro03_G32950,Ro03_G32954,Ro03_G32952,Ro03_G32953,Ro03_G32948;TA1176:Ro03_G32885,Ro03_G32886;TA16:Ro03_G05887,Ro03_G05884,Ro03_G33216,Ro03_G33218,Ro03_G33221,Ro03_G33219,Ro03_G33212,Ro03_G33213,Ro03_G33215,Ro03_G33214,Ro03_G33211;TA566:Ro06_G29113,Ro06_G29115,Ro06_G29117;TA316:Ro01_G30358,Ro01_G30360,Ro01_G30359;TA160:Ro07_G34141,Ro07_G34144,Ro07_G34143,Ro07_G34150,Ro07_G34148;TA241:Ro05_G31350,Ro05_G31351,Ro05_G31354,Ro05_G31352;TA129:Ro03_G33161,Ro03_G33163,Ro03_G33166,Ro03_G33162,Ro03_G33164;TA761:Ro01_G30005,Ro01_G30004;TA432:Ro03_G33077,Ro03_G33076,Ro03_G33078;TA621:Ro07_G34118,Ro07_G34124,Ro07_G34128;TA750:Ro01_G29877,Ro01_G29878 | AT4G34800||AT4G38840||AT5G18080||AT5G18030||AT4G23180||AT4G23140||AT4G21410||AT4G38830||AT4G05200||AT4G27300||AT1G11410||AT4G27290||AT1G65790||AT4G21380||AT5G54490||AT4G21390||AT1G11340||AT1G61500||AT1G11280||AT1G61550||AT1G61370||AT1G61380||AT1G61440||AT1G61390||AT1G61490||AT4G03230||AT4G23130||AT1G11330||AT4G34810 | PBP1; PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding||CRK6; CRK6 (CYSTEINE-RICH RLK 6); kinase||ARK1; ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase||ARK3; ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase||S-locus lectin protein kinase family protein||CRK10, RLK4; CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase||SD1-29; SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase||auxin-responsive protein, putative||S-locus protein kinase, putative||ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding||B120; B120; ATP binding / protein kinase/ protein serine/threonine kinase/ sugar binding||CRK5, RLK6; CRK5 (CYSTEINE-RICH RLK5); kinase||auxin-responsive family protein||protein kinase family protein||ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding | GO:0012505|endomembrane system;GO:0005524|ATP binding;GO:0016020|membrane;GO:0003674|molecular_function;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0004713|protein tyrosine kinase activity;GO:0030246|carbohydrate binding;GO:0005773|vacuole;GO:0004674|protein serine/threonine kinase activity;GO:0009733|response to auxin stimulus;GO:0019199|transmembrane receptor protein kinase activity;GO:0048544|recognition of pollen;GO:0005634|nucleus;GO:0005509|calcium ion binding;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0046777|protein amino acid autophosphorylation;GO:0006468|protein amino acid phosphorylation;GO:0005575|cellular_component | Ro02_G35210,Ro03_G32641,Ro04_G37295,Ro03_G31990,Ro03_G31991,Ro03_G33217,Ro02_G35677,Ro03_G33012,Ro07_G33643,Ro04_G37210,Ro02_G35834,Ro05_G31589,Ro07_G34005,Ro05_G31640,Ro03_G32783,Ro06_G28817,Ro03_G32472,Ro03_G32252,Ro03_G32474,Ro03_G31989,Ro05_G30976,Ro05_G30975,Ro03_G32803,Ro02_G35671 | 126 | 16 | Rubus occidentalis | Roccidentalis | |||
| TA55:Ro04_G37280,Ro04_G37285,Ro04_G37299,Ro04_G37298,Ro04_G37301,Ro04_G37306,Ro04_G37292;TA108:Ro01_G30454,Ro01_G22673,Ro01_G30466,Ro01_G30463,Ro01_G30462;TA354:Ro02_G35551,Ro02_G35552,Ro02_G35561;TA792:Ro01_G30456,Ro01_G30457;TA951:Ro02_G35523,Ro02_G35531;TA620:Ro07_G34045,Ro07_G34048,Ro07_G34051;TA115:Ro02_G26779,Ro02_G23246,Ro02_G35529,Ro02_G35535,Ro02_G35536;TA276:Ro07_G27865,Ro07_G34043,Ro07_G34044,Ro07_G34057;TA791:Ro01_G30455,Ro01_G30467;TA240:Ro05_G31261,Ro05_G27822,Ro05_G31267,Ro05_G31275;TA570:Ro06_G29445,Ro06_G29451,Ro06_G29456;TA415:Ro03_G32276,Ro03_G27929,Ro03_G32282;TA1148:Ro03_G32291,Ro03_G32338;TA504:Ro05_G31258,Ro05_G31273,Ro05_G31272;TA619:Ro07_G34040,Ro07_G34058,Ro07_G34059;TA1954:Ro07_G34024,Ro07_G34029;TA1771:Ro06_G29458,Ro06_G29457;TA900:Ro02_G23770,Ro02_G35520;TA1520:Ro05_G31268,Ro05_G26869 | ATMG00860 | ORF158; hypothetical protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G16579,Ro01_G30151,Ro01_G30422,Ro01_G21563,Ro06_G27868,Ro07_G33796,Ro01_G30472,Ro06_G29428,Ro03_G32296,Ro05_G26251,Ro07_G24478,Ro07_G34077,Ro03_G32286,Ro03_G32295,Ro04_G36762,Ro04_G37300,Ro06_G29431,Ro04_G26481,Ro07_G34074,Ro02_G27760,Ro07_G33798,Ro03_G32307,Ro06_G28124,Ro05_G31266,Ro06_G29459,Ro03_G32275,Ro02_G35549,Ro04_G37305,Ro04_G36778,Ro06_G29432,Ro07_G34025,Ro04_G36779 | 91 | 19 | Rubus occidentalis | Roccidentalis | |||
| TA32:Ro01_G29908,Ro01_G29912,Ro01_G29911,Ro01_G29909,Ro01_G29907,Ro01_G29897,Ro01_G29899,Ro01_G29898;TA1716:Ro06_G28353,Ro06_G28354;TA531:Ro06_G13666,Ro06_G28332,Ro06_G28331;TA1839:Ro07_G17031,Ro07_G33943;TA1988:Ro07_G34578,Ro07_G34575;TA758:Ro01_G29973,Ro01_G29972;TA1335:Ro04_G36791,Ro04_G36789 | AT3G47110||AT3G47570||AT5G20480||AT5G07150||AT3G47090||AT3G24240||AT3G16030||AT4G21380||AT1G29200||AT5G39390||AT3G47580 | leucine-rich repeat family protein / protein kinase family protein||ARK3; ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase||CES101; CES101 (CALLUS EXPRESSION OF RBCS 101); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding||unknown protein||EFR; EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase||leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein | GO:0012505|endomembrane system;GO:0005524|ATP binding;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0004713|protein tyrosine kinase activity;GO:0030246|carbohydrate binding;GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0005773|vacuole;GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0019199|transmembrane receptor protein kinase activity;GO:0048544|recognition of pollen;GO:0016301|kinase activity;GO:0002764|immune response-regulating signaling pathway;GO:0005886|plasma membrane;GO:0005515|protein binding;GO:0005529|sugar binding;GO:0009626|plant-type hypersensitive response;GO:0016045|detection of bacterium;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0010204|defense response signaling pathway, resistance gene-independent | Ro07_G33942,Ro06_G29258,Ro03_G33118,Ro05_G30987,Ro03_G32538,Ro07_G34189,Ro06_G29398,Ro01_G30253,Ro03_G32132,Ro03_G33020,Ro03_G33075,Ro07_G34351,Ro01_G30443,Ro04_G36726,Ro03_G32198,Ro03_G32608,Ro07_G34569,Ro07_G34576,Ro01_G30299,Ro03_G32579,Ro04_G36753,Ro04_G36752 | 43 | 7 | Rubus occidentalis | Roccidentalis | |||
| TA14:Ro07_G33965,Ro07_G33968,Ro07_G33969,Ro07_G21203,Ro07_G21202,Ro07_G21201,Ro07_G33977,Ro07_G21198,Ro07_G21194,Ro07_G33976,Ro07_G33975,Ro07_G33974;TA287:Ro07_G34282,Ro07_G34290,Ro07_G34289,Ro07_G34297;TA934:Ro02_G35227,Ro02_G35228;TA1682:Ro06_G22976,Ro06_G22978;TA161:Ro07_G34197,Ro07_G34200,Ro07_G23062,Ro07_G23064,Ro07_G34206 | AT1G66920||AT5G38280||AT4G18250||AT5G53110||AT5G38260||AT1G66910||AT3G23940||AT1G66980||AT1G70250 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 118 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein||dehydratase family||PR5K; PR5K; kinase/ transmembrane receptor protein serine/threonine kinase||protein kinase, putative||serine/threonine protein kinase, putative||receptor serine/threonine kinase, putative | GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0003824|catalytic activity;GO:0006629|lipid metabolic process;GO:0006071|glycerol metabolic process;GO:0009570|chloroplast stroma;GO:0009555|pollen development;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0008889|glycerophosphodiester phosphodiesterase activity;GO:0005507|copper ion binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0009620|response to fungus | Ro07_G33950,Ro03_G32462,Ro07_G34284,Ro03_G31762,Ro04_G36917,Ro05_G31027,Ro06_G29231,Ro07_G34287,Ro06_G22323 | 34 | 5 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30269,Ro03_G32639,Ro03_G31769,Ro03_G32121,Ro02_G35711,Ro07_G34116,Ro05_G04032,Ro03_G32248,Ro02_G35108,Ro07_G33949,Ro02_G35754,Ro05_G31587,Ro07_G33826,Ro06_G29344,Ro06_G28205,Ro05_G30939,Ro05_G30593,Ro07_G34227,Ro03_G31773,Ro06_G28505,Ro02_G35992,Ro06_G28730,Ro03_G32553,Ro04_G36370,Ro03_G32612,Ro05_G31093,Ro04_G37198,Ro06_G29308,Ro05_G30849,Ro07_G34244,Ro06_G28245,Ro06_G28892 | 32 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA38:Ro01_G29742,Ro01_G29744,Ro01_G29746,Ro01_G29739,Ro01_G10806,Ro01_G29745,Ro01_G29743;TA1378:Ro05_G01834,Ro05_G01835;TA114:Ro02_G22774,Ro02_G22773,Ro02_G22772,Ro02_G22771,Ro02_G22770;TA1014:Ro03_G06550,Ro03_G06548;TA442:Ro04_G12430,Ro04_G12429,Ro04_G12427;TA1400:Ro05_G11781,Ro05_G11782;TA992:Ro03_G05190,Ro03_G05189 | AT4G34410||AT5G50080||AT3G01580||AT5G67010||AT5G61890||AT3G23220||AT3G23230||AT3G23240||AT3G15210||AT1G28360||AT5G47230||AT4G17500||AT4G18450||AT5G64750||AT3G16770||AT5G13330||AT2G47520||AT1G53910||AT2G46310||AT3G13770 | ERF110; DNA binding / transcription factor||AP2 domain-containing transcription factor, putative||Rap2.6L; Rap2.6L (related to AP2 6L); DNA binding / transcription factor||RRTF1; RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1); DNA binding / transcription factor||DNA binding / transcription factor||ATERF-4, ERF4, RAP2.5, ATERF4; ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor||RAP2.3, ATEBP, ERF72; ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor||ERF1, ATERF1; ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor||ERF12, ATERF12; ERF12 (ERF DOMAIN PROTEIN 12); DNA binding / transcription factor/ transcription repressor||ethylene-responsive factor, putative||pentatricopeptide (PPR) repeat-containing protein||ATERF-1; ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor||RAP2.12; RAP2.12; DNA binding / transcription factor||CRF5; CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor||AP2 domain-containing transcription factor family protein||ERF5, ATERF-5, ATERF5; ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription activator/ transcription factor||ABR1; ABR1 (ABA REPRESSOR1); DNA binding / transcription factor | GO:0005643|nuclear pore;GO:0010200|response to chitin;GO:0051707|response to other organism;GO:0050832|defense response to fungus;GO:0006950|response to stress;GO:0010105|negative regulation of ethylene mediated signaling pathway;GO:0006952|defense response;GO:0009749|response to glucose stimulus;GO:0048366|leaf development;GO:0009867|jasmonic acid mediated signaling pathway;GO:0016564|transcription repressor activity;GO:0003674|molecular_function;GO:0009788|negative regulation of abscisic acid mediated signaling pathway;GO:0016563|transcription activator activity;GO:0009737|response to abscisic acid stimulus;GO:0009409|response to cold;GO:0009723|response to ethylene stimulus;GO:0034059|response to anoxia;GO:0009793|embryonic development ending in seed dormancy;GO:0016604|nuclear body;GO:0003677|DNA binding;GO:0042991|transcription factor import into nucleus;GO:0008150|biological_process;GO:0005634|nucleus;GO:0008219|cell death;GO:0006970|response to osmotic stress;GO:0009864|induced systemic resistance, jasmonic acid mediated signaling pathway;GO:0009735|response to cytokinin stimulus;GO:0048825|cotyledon development;GO:0005515|protein binding;GO:0009873|ethylene mediated signaling pathway;GO:0003700|transcription factor activity;GO:0006355|regulation of transcription, DNA-dependent;GO:0005575|cellular_component | Ro01_G11629,Ro02_G20091,Ro04_G25029,Ro04_G08859,Ro03_G21181,Ro02_G01376,Ro06_G11109,Ro07_G19644,Ro01_G29741 | 32 | 7 | Rubus occidentalis | Roccidentalis | |||
| TA1909:Ro07_G33351,Ro07_G33364 | - | - | - | Ro01_G29508,Ro01_G29710,Ro02_G34839,Ro02_G35157,Ro02_G35371,Ro02_G35723,Ro02_G35844,Ro02_G35867,Ro03_G31812,Ro03_G31825,Ro03_G31960,Ro03_G32051,Ro03_G32088,Ro03_G32119,Ro03_G32973,Ro03_G33199,Ro04_G36227,Ro04_G36532,Ro04_G36903,Ro04_G36980,Ro04_G37214,Ro05_G30640,Ro05_G30991,Ro05_G31400,Ro05_G31632,Ro06_G28355,Ro06_G28492,Ro06_G28826,Ro07_G33418 | 31 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA8:Ro01_G30206,Ro01_G30201,Ro01_G30203,Ro01_G30200,Ro01_G30215,Ro01_G30218,Ro01_G30216,Ro01_G30219,Ro01_G30217,Ro01_G30212,Ro01_G30213,Ro01_G30211,Ro01_G30222,Ro01_G30221;TA78:Ro03_G31894,Ro03_G31893,Ro03_G31899,Ro03_G31898,Ro03_G31900,Ro03_G31897;TA402:Ro03_G31759,Ro03_G31757,Ro03_G31758 | AT1G72300||AT1G17240||AT2G15042 | protein binding||leucine-rich repeat transmembrane protein kinase, putative||AtRLP2; AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0008150|biological_process;GO:0004672|protein kinase activity;GO:0001653|peptide receptor activity;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0009611|response to wounding | Ro05_G31484,Ro01_G30229,Ro04_G37057,Ro05_G31410,Ro03_G31772 | 28 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA1501:Ro05_G30851,Ro05_G30855 | - | - | - | Ro03_G31971,Ro03_G32778,Ro05_G30535,Ro06_G29010,Ro06_G28281,Ro06_G29267,Ro07_G33305,Ro02_G34962,Ro01_G29727,Ro02_G34854,Ro03_G32516,Ro03_G32911,Ro02_G35319,Ro07_G33690,Ro01_G29714,Ro02_G35258,Ro06_G28335,Ro06_G29147,Ro07_G34278,Ro02_G35775,Ro02_G35795,Ro07_G34170,Ro04_G36098,Ro06_G28427,Ro07_G34186 | 27 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA2:Ro02_G24232,Ro02_G24237,Ro02_G24239,Ro02_G24242,Ro02_G35847,Ro02_G35860,Ro02_G35858,Ro02_G35857,Ro02_G24088,Ro02_G35888,Ro02_G35897,Ro02_G35887,Ro02_G11082,Ro02_G35889,Ro02_G11078,Ro02_G11077,Ro02_G35894,Ro02_G11075,Ro02_G11071,Ro02_G24095,Ro02_G11069,Ro02_G35896;TA903:Ro02_G24236,Ro02_G35849 | AT5G17680||AT4G08450||AT2G14080||AT4G16890||AT1G49430||AT5G17880||AT1G64400||AT5G46450||AT5G45260||AT1G63870||AT2G17050||AT4G16950||AT5G45200 | SNC1, BAL; SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding||CSA1; CSA1 (constitutive shade-avoidance1); ATP binding / transmembrane receptor||disease resistance protein (TIR-NBS-LRR class), putative||RRS1, ATWRKY52, SLH1; RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor||RPP5; RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding||LRD2, LACS2; LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2); long-chain-fatty-acid-CoA ligase||long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative | GO:0010143|cutin biosynthetic process;GO:0006915|apoptosis;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0004467|long-chain-fatty-acid-CoA ligase activity;GO:0006952|defense response;GO:0005524|ATP binding;GO:0010025|wax biosynthetic process;GO:0006633|fatty acid biosynthetic process;GO:0045087|innate immune response;GO:0017111|nucleoside-triphosphatase activity;GO:0031224|intrinsic to membrane;GO:0009507|chloroplast;GO:0009733|response to auxin stimulus;GO:0003824|catalytic activity;GO:0004888|transmembrane receptor activity;GO:0003677|DNA binding;GO:0042742|defense response to bacterium;GO:0005634|nucleus;GO:0008219|cell death;GO:0009416|response to light stimulus;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0009817|defense response to fungus, incompatible interaction;GO:0010311|lateral root formation;GO:0000166|nucleotide binding;GO:0005515|protein binding;GO:0010114|response to red light;GO:0003700|transcription factor activity;GO:0009816|defense response to bacterium, incompatible interaction;GO:0007165|signal transduction;GO:0005575|cellular_component;GO:0031957|very-long-chain-fatty-acid-CoA ligase activity | Ro02_G16559,Ro06_G28177 | 26 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA5:Ro07_G33548,Ro07_G33547,Ro07_G33546,Ro07_G33555,Ro07_G33557,Ro07_G33556,Ro07_G33569,Ro07_G33566,Ro07_G33568,Ro07_G33580,Ro07_G33572,Ro07_G33590,Ro07_G33587,Ro07_G33588,Ro07_G33586,Ro07_G33589,Ro07_G33595;TA100:Ro07_G33951,Ro07_G33953,Ro07_G33952,Ro07_G33955,Ro07_G33957,Ro07_G33956;TA612:Ro07_G33550,Ro07_G33549,Ro07_G33551 | AT2G33060||AT4G13810||AT2G32680||AT1G45616||AT2G15042||AT2G33020||AT2G32660 | protein binding||AtRLP47; AtRLP47 (Receptor Like Protein 47); protein binding||AtRLP6; AtRLP6 (Receptor Like Protein 6); protein binding||AtRLP24; AtRLP24 (Receptor Like Protein 24); kinase/ protein binding||AtRLP22; AtRLP22 (Receptor Like Protein 22); kinase/ protein binding||AtRLP23; AtRLP23 (Receptor Like Protein 23); kinase/ protein binding||AtRLP27; AtRLP27 (Receptor Like Protein 27); kinase/ protein binding | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0016020|membrane | - | 26 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA793:Ro01_G30465,Ro01_G30470;TA915:Ro02_G27971,Ro02_G35640;TA1155:Ro03_G32362,Ro03_G32341;TA1333:Ro04_G36771,Ro04_G36742 | - | - | - | Ro01_G30369,Ro01_G30434,Ro04_G36717,Ro04_G37279,Ro05_G31276,Ro05_G31280,Ro05_G31435,Ro07_G34748,Ro02_G35566,Ro03_G32725,Ro05_G31303,Ro06_G28100,Ro03_G32139,Ro03_G32324,Ro04_G15364,Ro04_G36727,Ro07_G34026,Ro06_G28097 | 26 | 4 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29641,Ro02_G35491,Ro01_G29891,Ro03_G32397,Ro01_G29956,Ro06_G29260,Ro01_G30227,Ro03_G32630,Ro01_G30288,Ro03_G32774,Ro02_G35375,Ro02_G34845,Ro06_G29369,Ro02_G35906,Ro07_G33283,Ro04_G36109,Ro07_G33674,Ro04_G36158,Ro05_G31592,Ro04_G36608,Ro04_G37225,Ro04_G36730,Ro05_G31617,Ro04_G36964,Ro05_G31079 | 25 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29949,Ro02_G35943,Ro01_G30058,Ro02_G36048,Ro02_G35259,Ro05_G30852,Ro02_G35604,Ro02_G36094,Ro03_G31871,Ro03_G32620,Ro03_G32615,Ro04_G36649,Ro04_G36296,Ro06_G29073,Ro04_G36466,Ro05_G31041,Ro05_G31513,Ro06_G28397,Ro06_G28085,Ro06_G28805,Ro06_G28968,Ro06_G29005,Ro07_G33782,Ro07_G34519,Ro07_G34596 | 25 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G03430 | polcalcin, putative / calcium-binding pollen allergen, putative | GO:0005737|cytoplasm;GO:0008150|biological_process;GO:0005509|calcium ion binding | Ro01_G00903,Ro06_G28229,Ro02_G35109,Ro07_G33267,Ro02_G35430,Ro04_G36548,Ro02_G36057,Ro07_G34160,Ro02_G35186,Ro07_G33793,Ro03_G10890,Ro03_G13077,Ro07_G33825,Ro06_G28044,Ro03_G32932,Ro07_G33961,Ro05_G31197,Ro07_G34651,Ro06_G28315,Ro07_G34215,Ro06_G28464,Ro07_G04321,Ro01_G30184,Ro07_G34293 | 24 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA18:Ro06_G28687,Ro06_G28683,Ro06_G28685,Ro06_G28689,Ro06_G23371,Ro06_G28684,Ro06_G28682,Ro06_G28688,Ro06_G28686,Ro06_G23369,Ro06_G23360;TA24:Ro03_G32943,Ro03_G32945,Ro03_G32946,Ro03_G32947,Ro03_G33002,Ro03_G33001,Ro03_G32997,Ro03_G32999,Ro03_G32998,Ro03_G33000 | AT4G21390||AT4G21366||AT1G61610||AT4G21380||AT4G27290||AT4G03230||AT2G19130||AT3G16030||AT1G67520||AT5G18470||AT1G65790 | ARK3; ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase||ARK1; ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase||CES101; CES101 (CALLUS EXPRESSION OF RBCS 101); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding||curculin-like (mannose-binding) lectin family protein||S-locus lectin protein kinase family protein||lectin protein kinase family protein||B120; B120; ATP binding / protein kinase/ protein serine/threonine kinase/ sugar binding||ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding||ATP binding / protein tyrosine kinase||ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding | GO:0012505|endomembrane system;GO:0009505|plant-type cell wall;GO:0005524|ATP binding;GO:0016020|membrane;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0004713|protein tyrosine kinase activity;GO:0030246|carbohydrate binding;GO:0005773|vacuole;GO:0004674|protein serine/threonine kinase activity;GO:0019199|transmembrane receptor protein kinase activity;GO:0048544|recognition of pollen;GO:0005634|nucleus;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0046777|protein amino acid autophosphorylation;GO:0006468|protein amino acid phosphorylation;GO:0005575|cellular_component | Ro03_G32536,Ro01_G07685,Ro02_G35618 | 24 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA37:Ro06_G08436,Ro06_G28557,Ro06_G28558,Ro06_G28561,Ro06_G28560,Ro06_G28564,Ro06_G08444,Ro06_G28562;TA126:Ro03_G32823,Ro03_G32822,Ro03_G32821,Ro03_G32839,Ro03_G32841;TA553:Ro06_G28559,Ro06_G28565,Ro06_G28556;TA89:Ro05_G31676,Ro05_G09341,Ro05_G31671,Ro05_G31669,Ro05_G31675,Ro05_G31680 | AT3G22250||AT1G22370||AT1G22380||AT1G22340||AT1G78270||AT1G22400||AT1G22360 | AtUGT85A7; AtUGT85A7 (UDP-glucosyl transferase 85A7); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups||AtUGT85A4; AtUGT85A4 (UDP-glucosyl transferase 85A4); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring hexosyl groups||AtUGT85A3; AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups||AtUGT85A2; AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups||AtUGT85A5; AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups||UDP-glucoronosyl/UDP-glucosyl transferase family protein||UGT85A1, ATUGT85A1; UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | GO:0015020|glucuronosyltransferase activity;GO:0016757|transferase activity, transferring glycosyl groups;GO:0050403|trans-zeatin O-beta-D-glucosyltransferase activity;GO:0050502|cis-zeatin O-beta-D-glucosyltransferase activity;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | Ro04_G37012 | 23 | 4 | Rubus occidentalis | Roccidentalis | |||
| TA506:Ro05_G31372,Ro05_G31378,Ro05_G31375;TA1517:Ro05_G31185,Ro05_G31187;TA1545:Ro05_G31706,Ro05_G31705;TA1524:Ro05_G31398,Ro05_G31397;TA1546:Ro05_G31708,Ro05_G31709;TA1539:Ro05_G31652,Ro05_G31651;TA1181:Ro03_G32920,Ro03_G32921;TA1512:Ro05_G31009,Ro05_G31008 | AT4G08850 | kinase | GO:0005886|plasma membrane;GO:0016020|membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | Ro05_G31701,Ro03_G32936,Ro05_G30993,Ro05_G31572,Ro05_G31135 | 22 | 8 | Rubus occidentalis | Roccidentalis | |||
| TA277:Ro07_G33319,Ro07_G33333,Ro07_G33335,Ro07_G04342;TA1951:Ro07_G34009,Ro07_G34010;TA278:Ro07_G33348,Ro07_G33345,Ro07_G33344,Ro07_G33350;TA310:Ro01_G30089,Ro01_G30090,Ro01_G30087;TA1322:Ro04_G36675,Ro04_G36667;TA532:Ro06_G14411,Ro06_G28958,Ro06_G14418 | AT3G47090||AT2G46060||AT3G47570||AT3G47580 | leucine-rich repeat transmembrane protein kinase, putative||transmembrane protein-related | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009507|chloroplast;GO:0004674|protein serine/threonine kinase activity;GO:0003674|molecular_function;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0016020|membrane | Ro04_G36552,Ro07_G33365 | 20 | 6 | Rubus occidentalis | Roccidentalis | |||
| TA4:Ro07_G13619,Ro07_G33507,Ro07_G33500,Ro07_G33508,Ro07_G33504,Ro07_G33505,Ro07_G33503,Ro07_G33509,Ro07_G33506,Ro07_G33498,Ro07_G33501,Ro07_G33518,Ro07_G33516,Ro07_G33517,Ro07_G33513,Ro07_G33514,Ro07_G33520,Ro07_G33519 | AT4G19520||AT5G18360||AT5G40060||AT5G17880||AT4G12010||AT5G45200||AT5G45250||AT5G46470||AT5G41740||AT5G17680||AT5G38850 | RPS4; RPS4 (RESISTANT TO P. SYRINGAE 4); receptor||disease resistance protein (TIR-NBS-LRR class), putative||CSA1; CSA1 (constitutive shade-avoidance1); ATP binding / transmembrane receptor||ATP binding / nucleoside-triphosphatase/ nucleotide binding | GO:0006915|apoptosis;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding;GO:0016020|membrane;GO:0004872|receptor activity;GO:0045087|innate immune response;GO:0017111|nucleoside-triphosphatase activity;GO:0031224|intrinsic to membrane;GO:0009507|chloroplast;GO:0009870|defense response signaling pathway, resistance gene-dependent;GO:0004888|transmembrane receptor activity;GO:0042742|defense response to bacterium;GO:0005634|nucleus;GO:0009416|response to light stimulus;GO:0005515|protein binding;GO:0010114|response to red light;GO:0009626|plant-type hypersensitive response;GO:0007165|signal transduction;GO:0000166|nucleotide binding | Ro07_G33512 | 19 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA7:Ro06_G28370,Ro06_G28371,Ro06_G28373,Ro06_G20926,Ro06_G25585,Ro06_G28385,Ro06_G28386,Ro06_G28387,Ro06_G15350,Ro06_G28392,Ro06_G28393,Ro06_G26238,Ro06_G28395,Ro06_G28394,Ro06_G26240;TA1714:Ro06_G28312,Ro06_G27629 | AT1G51800||AT1G51880||AT1G51860||AT1G51790||AT4G29990||AT4G29450 | light repressible receptor protein kinase||kinase||leucine-rich repeat protein kinase, putative | GO:0004674|protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity | Ro06_G28396 | 18 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA768:Ro01_G30086,Ro01_G19969 | AT4G31140 | glycosyl hydrolase family 17 protein | GO:0031225|anchored to membrane;GO:0046658|anchored to plasma membrane;GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0043169|cation binding;GO:0009505|plant-type cell wall;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005773|vacuole | Ro03_G31859,Ro07_G34419,Ro01_G30329,Ro02_G35836,Ro03_G32424,Ro03_G33085,Ro04_G36463,Ro05_G31452,Ro03_G32745,Ro05_G21799,Ro04_G36544,Ro07_G34396,Ro06_G13690,Ro04_G21713,Ro02_G35448 | 17 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA79:Ro03_G32083,Ro03_G32082,Ro03_G32084,Ro03_G32085,Ro03_G32081,Ro03_G32086;TA1168:Ro03_G32701,Ro03_G32698;TA425:Ro03_G32686,Ro03_G32724,Ro03_G32723;TA313:Ro01_G30164,Ro01_G30175,Ro01_G30176 | AT4G20200||AT5G23960||AT3G14540||AT3G25810||AT4G16730 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase||myrcene/ocimene synthase, putative||terpene synthase/cyclase family protein||lyase/ magnesium ion binding | GO:0009536|plastid;GO:0034002|(R)-limonene synthase activity;GO:0010334|sesquiterpene synthase activity;GO:0050551|myrcene synthase activity;GO:0005515|protein binding;GO:0016829|lyase activity;GO:0043693|monoterpene biosynthetic process;GO:0000287|magnesium ion binding;GO:0050550|pinene synthase activity;GO:0016106|sesquiterpenoid biosynthetic process;GO:0008152|metabolic process;GO:0051762|sesquiterpene biosynthetic process;GO:0005575|cellular_component;GO:0050552|(4S)-limonene synthase activity | Ro03_G32700,Ro04_G36208,Ro03_G32087 | 17 | 4 | Rubus occidentalis | Roccidentalis | |||
| TA68:Ro07_G34521,Ro07_G34524,Ro07_G34523,Ro07_G34527,Ro07_G20659,Ro07_G25146,Ro07_G34528;TA1758:Ro06_G29011,Ro06_G29013 | AT3G12580||AT1G16030||AT1G74310 | ATHSP101, HSP101, HOT1; ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding||Hsp70b; Hsp70b (heat shock protein 70B); ATP binding||HSP70; HSP70 (heat shock protein 70); ATP binding | GO:0006457|protein folding;GO:0009507|chloroplast;GO:0009644|response to high light intensity;GO:0046686|response to cadmium ion;GO:0009615|response to virus;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0016887|ATPase activity;GO:0042542|response to hydrogen peroxide;GO:0009408|response to heat;GO:0009617|response to bacterium;GO:0043335|protein unfolding;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0016020|membrane;GO:0005829|cytosol;GO:0005618|cell wall | Ro01_G11659,Ro06_G29008,Ro07_G33627,Ro07_G33636,Ro02_G36064,Ro07_G07906,Ro07_G11988 | 16 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA9:Ro04_G36399,Ro04_G36394,Ro04_G36398,Ro04_G36403,Ro04_G36405,Ro04_G36400,Ro04_G36402,Ro04_G36397,Ro04_G36404,Ro04_G36401,Ro04_G36396,Ro04_G23794,Ro04_G23795,Ro04_G23796;TA1306:Ro04_G36389,Ro04_G36387 | - | - | - | - | 16 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA81:Ro04_G02535,Ro04_G36198,Ro04_G02536,Ro04_G02537,Ro04_G36297,Ro04_G36295;TA1319:Ro04_G36615,Ro04_G36619;TA469:Ro04_G36737,Ro04_G22295,Ro04_G22294 | AT2G26710||AT3G14630||AT2G03870 | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative||BAS1, CYP734A1, CYP72B1; BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase||CYP72A9; CYP72A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0004497|monooxygenase activity;GO:0005732|small nucleolar ribonucleoprotein complex;GO:0003674|molecular_function;GO:0005506|iron ion binding;GO:0008395|steroid hydroxylase activity;GO:0010268|brassinosteroid homeostasis;GO:0012505|endomembrane system;GO:0005634|nucleus;GO:0019825|oxygen binding;GO:0009741|response to brassinosteroid stimulus;GO:0009416|response to light stimulus;GO:0016131|brassinosteroid metabolic process;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro04_G26381,Ro04_G37222,Ro06_G25758,Ro05_G19982,Ro07_G18165 | 16 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA12:Ro03_G17160,Ro03_G17156,Ro03_G33044,Ro03_G33048,Ro03_G33047,Ro03_G33043,Ro03_G17148,Ro03_G33059,Ro03_G17147,Ro03_G33057,Ro03_G17144,Ro03_G16137 | AT1G21270||AT1G21250||AT1G21230||AT1G21240||AT1G21245 | WAK2; WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase||WAK5; WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase||WAK1, PRO25; WAK1 (CELL WALL-ASSOCIATED KINASE); kinase||wall-associated kinase-related||WAK3; WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0009992|cellular water homeostasis;GO:0005886|plasma membrane;GO:0007166|cell surface receptor linked signaling pathway;GO:0004672|protein kinase activity;GO:0009826|unidimensional cell growth;GO:0005509|calcium ion binding;GO:0006468|protein amino acid phosphorylation;GO:0009505|plant-type cell wall;GO:0009311|oligosaccharide metabolic process;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0009751|response to salicylic acid stimulus;GO:0005773|vacuole | Ro03_G33046,Ro02_G25593,Ro03_G32104 | 15 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1412:Ro05_G12975,Ro05_G12976 | AT4G31140||AT5G58090 | glycosyl hydrolase family 17 protein | GO:0031225|anchored to membrane;GO:0046658|anchored to plasma membrane;GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0043169|cation binding;GO:0009505|plant-type cell wall;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005773|vacuole | Ro01_G30330,Ro02_G35449,Ro02_G35837,Ro03_G32425,Ro03_G32747,Ro03_G33086,Ro04_G36464,Ro05_G31453,Ro07_G33906,Ro07_G14547,Ro07_G34397,Ro04_G36544,Ro04_G36764 | 15 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1982:Ro07_G34482,Ro07_G34480 | AT3G45680 | proton-dependent oligopeptide transport (POT) family protein | GO:0005215|transporter activity;GO:0009624|response to nematode;GO:0016020|membrane;GO:0006857|oligopeptide transport | Ro01_G29764,Ro01_G30037,Ro02_G35404,Ro03_G31905,Ro03_G32787,Ro03_G33167,Ro04_G36279,Ro04_G36632,Ro04_G36803,Ro04_G36934,Ro05_G30574,Ro07_G26377,Ro07_G34276 | 15 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA6:Ro05_G16790,Ro05_G30726,Ro05_G30736,Ro05_G30725,Ro05_G30731,Ro05_G30727,Ro05_G30735,Ro05_G30729,Ro05_G30734,Ro05_G30733,Ro05_G30737,Ro05_G30730,Ro05_G30728,Ro05_G30738,Ro05_G30732 | AT1G64065 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44000.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0016020|membrane | - | 15 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA95:Ro07_G11534,Ro07_G11533,Ro07_G33673,Ro07_G33676,Ro07_G11529,Ro07_G11528;TA280:Ro07_G33667,Ro07_G11526,Ro07_G33675,Ro07_G11524;TA311:Ro01_G30093,Ro01_G30096,Ro01_G30095 | AT1G02205||AT1G02190||AT3G15850 | FAD5, FADB, JB67, ADS3; FAD5 (FATTY ACID DESATURASE 5); 16:0 monogalactosyldiacylglycerol desaturase/ oxidoreductase||CER1; CER1 (ECERIFERUM 1); octadecanal decarbonylase||CER1 protein, putative | GO:0009579|thylakoid;GO:0009979|16:0 monogalactosyldiacylglycerol desaturase activity;GO:0005506|iron ion binding;GO:0016491|oxidoreductase activity;GO:0055114|oxidation reduction;GO:0012505|endomembrane system;GO:0010205|photoinhibition;GO:0005783|endoplasmic reticulum;GO:0006633|fatty acid biosynthetic process;GO:0006636|unsaturated fatty acid biosynthetic process | Ro05_G21773,Ro06_G28597 | 15 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G17800||AT4G28950||AT3G48040||AT4G35020||AT1G75840||AT2G44690||AT5G53300||AT3G08690||AT4G27960 | ARAC3, ROP6, RHO1PS, ATROP6; ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase||UBC10; UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase||ARAC8, ATROP10, ROP10, ATRAC8; ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10); GTP binding / GTPase||UBC11, ATUBC11; UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase||UBC9; UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase||ARAC5, ATGP3, ROP4, ATROP4; ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase||ARAC9, ATROP8, ROP8; ARAC9; GTP binding||ARAC7, ATROP9, ATRAC7, RAC7, ROP9; ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9); GTP binding||ARAC1, ATGP2, ATRAC1, ROP3, ATROP3; ARAC1; GTP binding | GO:0009788|negative regulation of abscisic acid mediated signaling pathway;GO:0009524|phragmoplast;GO:0005819|spindle;GO:0015031|protein transport;GO:0003924|GTPase activity;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0009738|abscisic acid mediated signaling pathway;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0012505|endomembrane system;GO:0009734|auxin mediated signaling pathway;GO:0005634|nucleus;GO:0005575|cellular_component;GO:0004842|ubiquitin-protein ligase activity;GO:0005737|cytoplasm;GO:0005525|GTP binding;GO:0040007|growth | Ro01_G01210,Ro02_G34853,Ro01_G07728,Ro05_G03531,Ro02_G08805,Ro06_G19243,Ro07_G16758,Ro05_G10987,Ro03_G12069,Ro03_G31852,Ro03_G15768,Ro07_G06799,Ro06_G28911,Ro07_G19643 | 14 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29866,Ro04_G36504,Ro02_G35456,Ro03_G32601,Ro02_G35572,Ro04_G18886,Ro03_G25772,Ro03_G32393,Ro03_G32609,Ro05_G31483,Ro04_G17551,Ro06_G28873,Ro04_G36704,Ro06_G28212 | 14 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30363,Ro05_G31295,Ro03_G07504,Ro07_G33751,Ro01_G30451,Ro05_G30916,Ro05_G31724,Ro03_G32806,Ro01_G30408,Ro05_G31720,Ro05_G31296,Ro06_G28136,Ro07_G34027,Ro07_G20526 | 14 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA1976:Ro07_G34398,Ro07_G34418 | AT3G05850 | transposable element gene | - | Ro01_G14548,Ro02_G35445,Ro02_G35839,Ro03_G31860,Ro03_G32422,Ro03_G32749,Ro03_G33081,Ro04_G36457,Ro04_G36545,Ro05_G31162,Ro05_G31454,Ro07_G33908 | 14 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA136:Ro05_G30772,Ro05_G30770,Ro05_G30773,Ro05_G30776,Ro05_G30775;TA159:Ro07_G33668,Ro07_G33669,Ro07_G33671,Ro07_G33678,Ro07_G25515;TA390:Ro03_G20397,Ro03_G32510,Ro03_G32509 | AT4G33790||AT3G44550||AT5G22500||AT3G44540 | FAR1; FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors||CER4, G7, FAR3; CER4 (ECERIFERUM 4); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors||FAR4; FAR4 (FATTY ACID REDUCTASE 4); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors||FAR5; FAR5 (FATTY ACID REDUCTASE 5); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors | GO:0009507|chloroplast;GO:0005488|binding;GO:0003824|catalytic activity;GO:0010025|wax biosynthetic process;GO:0005783|endoplasmic reticulum;GO:0008152|metabolic process;GO:0009556|microsporogenesis;GO:0005575|cellular_component;GO:0016627|oxidoreductase activity, acting on the CH-CH group of donors | Ro04_G37201 | 14 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA438:Ro04_G06356,Ro04_G36435,Ro04_G36436;TA1515:Ro05_G31086,Ro05_G31084;TA568:Ro06_G29179,Ro06_G29178,Ro06_G29176 | AT3G62450||AT1G45616||AT3G11080||AT3G11010||AT3G05660||AT1G09970 | AtRLP6; AtRLP6 (Receptor Like Protein 6); protein binding||LRR XI-23; LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||unknown protein||AtRLP33; AtRLP33 (Receptor Like Protein 33); kinase/ protein binding||AtRLP34; AtRLP34 (Receptor Like Protein 34); kinase/ protein binding||AtRLP35; AtRLP35 (Receptor Like Protein 35); kinase/ protein binding | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0005524|ATP binding;GO:0004674|protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0004672|protein kinase activity;GO:0046777|protein amino acid autophosphorylation;GO:0006952|defense response;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0016020|membrane | Ro03_G32593,Ro04_G36437,Ro06_G28942,Ro05_G31421,Ro06_G28946,Ro02_G08027 | 14 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA70:Ro01_G29708,Ro01_G29703,Ro01_G29706,Ro01_G29704,Ro01_G29702,Ro01_G29707;TA107:Ro01_G30060,Ro01_G30061,Ro01_G30063,Ro01_G30064,Ro01_G30062;TA1158:Ro03_G32453,Ro03_G32451 | AT2G23620||AT2G23580||AT4G37140||AT2G23610||AT3G50440||AT2G23600 | ACL, ATMES2, MES2, ATME8, ME8; ACL (ACETONE-CYANOHYDRIN LYASE); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase||ATMES10, MES10; MES10 (METHYL ESTERASE 10); hydrolase/ hydrolase, acting on ester bonds / methyl jasmonate esterase||MEE69, MES20, ATMES20; MEE69 (MATERNAL EFFECT EMBRYO ARREST 69); hydrolase, acting on ester bonds||ATMES1, MES1; MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase||ATMES4, MES4, ABE4; MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase||ATMES3, MES3; MES3 (METHYL ESTERASE 3); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase | GO:0009627|systemic acquired resistance;GO:0009696|salicylic acid metabolic process;GO:0016788|hydrolase activity, acting on ester bonds;GO:0009817|defense response to fungus, incompatible interaction;GO:0005575|cellular_component;GO:0016787|hydrolase activity;GO:0009793|embryonic development ending in seed dormancy | Ro03_G32450 | 14 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA713:Ro01_G26082,Ro01_G25762;TA1790:Ro07_G07797,Ro07_G07799;TA1084:Ro03_G19186,Ro03_G19189 | AT5G16710||AT2G29500||AT5G59720||AT1G10470 | 17.6 kDa class I small heat shock protein (HSP17.6B-CI)||HSP18.2; HSP18.2 (heat shock protein 18.2)||ARR4, MEE7, ATRR1, IBC7; ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator||DHAR3; DHAR3 (dehydroascorbate reductase 1); glutathione dehydrogenase (ascorbate) | GO:0030528|transcription regulator activity;GO:0006950|response to stress;GO:0007623|circadian rhythm;GO:0000156|two-component response regulator activity;GO:0010017|red or far-red light signaling pathway;GO:0009941|chloroplast envelope;GO:0003674|molecular_function;GO:0009644|response to high light intensity;GO:0045174|glutathione dehydrogenase (ascorbate) activity;GO:0009793|embryonic development ending in seed dormancy;GO:0009507|chloroplast;GO:0006979|response to oxidative stress;GO:0042752|regulation of circadian rhythm;GO:0042542|response to hydrogen peroxide;GO:0010286|heat acclimation;GO:0009408|response to heat;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0009735|response to cytokinin stimulus;GO:0005515|protein binding;GO:0009570|chloroplast stroma;GO:0010114|response to red light;GO:0009736|cytokinin mediated signaling pathway;GO:0005575|cellular_component | Ro06_G19431,Ro06_G23651,Ro07_G34535,Ro03_G23223,Ro07_G27937,Ro04_G36533,Ro05_G24914,Ro06_G25096 | 14 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29864,Ro04_G25774,Ro02_G35573,Ro03_G32396,Ro03_G15613,Ro04_G18888,Ro06_G28213,Ro03_G32438,Ro03_G32603,Ro05_G31487,Ro03_G32611,Ro06_G28874,Ro04_G37273 | 13 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G05850 | transposable element gene | - | Ro01_G30126,Ro03_G32710,Ro02_G34965,Ro07_G34090,Ro02_G35183,Ro05_G31616,Ro02_G35519,Ro03_G32719,Ro06_G28384,Ro05_G31612,Ro06_G28660,Ro06_G29194,Ro05_G31219 | 13 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA10:Ro03_G18140,Ro03_G32855,Ro03_G32858,Ro03_G32856,Ro03_G32854,Ro03_G32879,Ro03_G32880,Ro03_G32876,Ro03_G32877,Ro03_G32878,Ro03_G32883,Ro03_G32882,Ro03_G32881 | AT1G17180||AT1G78380||AT1G78360 | ATGSTU21; ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21); glutathione transferase||ATGSTU25; ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase||ATGSTU19, GST8; ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase | GO:0009507|chloroplast;GO:0043295|glutathione binding;GO:0006979|response to oxidative stress;GO:0042631|cellular response to water deprivation;GO:0046686|response to cadmium ion;GO:0009570|chloroplast stroma;GO:0005886|plasma membrane;GO:0009407|toxin catabolic process;GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity | - | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1145:Ro03_G32281,Ro03_G32300 | AT1G50750||AT1G50790 | unknown protein | ;GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0008150|biological_process | Ro01_G22949,Ro02_G35868,Ro03_G31802,Ro03_G32192,Ro06_G29379,Ro05_G31565,Ro07_G33617,Ro06_G29430,Ro07_G33789,Ro03_G32301,Ro06_G26356 | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA11:Ro03_G31866,Ro03_G31867,Ro03_G31868,Ro03_G31887,Ro03_G31882,Ro03_G31880,Ro03_G31884,Ro03_G31886,Ro03_G31876,Ro03_G31885,Ro03_G31883,Ro03_G31919,Ro03_G26511 | AT2G30150||AT2G30140 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0016757|transferase activity, transferring glycosyl groups;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | - | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA13:Ro07_G33828,Ro07_G27864,Ro07_G33829,Ro07_G25062,Ro07_G33833,Ro07_G33838,Ro07_G33835,Ro07_G27863,Ro07_G33836,Ro07_G33834,Ro07_G33841,Ro07_G33837 | AT2G15780||AT2G15770 | glycine-rich protein | GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0005507|copper ion binding | Ro02_G00644 | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA20:Ro06_G28997,Ro06_G28992,Ro06_G28993,Ro06_G29000,Ro06_G06126,Ro06_G29001,Ro06_G29004,Ro06_G29002,Ro06_G29003,Ro06_G28998,Ro06_G28999 | AT5G53130||AT3G09410||AT4G01010 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||pectinacetylesterase family protein||ATCNGC13, CNGC13; ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0004091|carboxylesterase activity;GO:0008150|biological_process;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | Ro01_G30347,Ro06_G29372 | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA30:Ro07_G33346,Ro07_G33352,Ro07_G33355,Ro07_G33354,Ro07_G33353,Ro07_G33357,Ro07_G33360,Ro07_G33362,Ro07_G33361 | AT5G04700||AT3G18670||AT3G05650||AT2G33020||AT2G34930 | ankyrin repeat family protein||AtRLP24; AtRLP24 (Receptor Like Protein 24); kinase/ protein binding||AtRLP32; AtRLP32 (Receptor Like Protein 32); kinase/ protein binding||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).||disease resistance family protein | GO:0003674|molecular_function;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0008150|biological_process;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0005618|cell wall | Ro07_G33312,Ro07_G33317,Ro07_G33349,Ro07_G33356 | 13 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA104:Ro01_G27845,Ro01_G29978,Ro01_G24354,Ro01_G25005,Ro01_G27666;TA168:Ro01_G19762,Ro01_G29999,Ro01_G19757,Ro01_G19754 | - | - | - | Ro01_G19768,Ro05_G31000,Ro06_G28737,Ro04_G36972 | 13 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA19:Ro06_G28857,Ro06_G28856,Ro06_G28854,Ro06_G28859,Ro06_G28855,Ro06_G28858,Ro06_G28852,Ro06_G28853,Ro06_G28872,Ro06_G28869,Ro06_G28875;TA1750:Ro06_G28866,Ro06_G28865 | AT2G16810||AT4G19940||AT3G16210||AT1G30790||AT3G16590||AT3G52320||AT3G17530||AT3G06240||AT2G41473 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17710.1).||F-box family protein (FBX8)||F-box family protein | GO:0003674|molecular_function;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0008150|biological_process;GO:0004842|ubiquitin-protein ligase activity;GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | - | 13 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA142:Ro05_G31493,Ro05_G31491,Ro05_G31495,Ro05_G31494,Ro05_G31492;TA565:Ro06_G28966,Ro06_G28965,Ro06_G28962;TA214:Ro03_G33111,Ro03_G33041,Ro03_G33045,Ro03_G16142 | AT5G39110||AT5G39130||AT5G39160||AT5G38940||AT5G38930||AT5G39190||AT3G05950 | germin-like protein, putative||germin-like protein (GLP2a) (GLP5a)||manganese ion binding / nutrient reservoir||GLP2A, ATGER2, GER2; GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase | GO:0045735|nutrient reservoir activity;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0009651|response to salt stress;GO:0030145|manganese ion binding;GO:0008150|biological_process;GO:0031012|extracellular matrix;GO:0005618|cell wall | Ro06_G28614 | 13 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA952:Ro02_G35524,Ro02_G35534;TA1519:Ro05_G31264,Ro05_G31270;TA1956:Ro07_G34050,Ro07_G34066 | - | - | - | Ro01_G30161,Ro01_G30459,Ro01_G30473,Ro04_G36763,Ro03_G32293,Ro03_G32384,Ro04_G26723 | 13 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29642,Ro04_G36518,Ro02_G35359,Ro05_G30865,Ro04_G17557,Ro06_G28132,Ro05_G31173,Ro06_G26563,Ro07_G33696,Ro03_G32873,Ro03_G33053,Ro05_G30494 | 12 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA1118:Ro03_G27758,Ro03_G32299 | AT4G04890||AT4G21750||AT1G05230 | ATML1; ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor||HDG2; HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor||PDF2; PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor | GO:0010090|trichome morphogenesis;GO:0048825|cotyledon development;GO:0009913|epidermal cell differentiation;GO:0043565|sequence-specific DNA binding;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | Ro01_G30012,Ro07_G33754,Ro06_G29415,Ro06_G28194,Ro03_G31799,Ro04_G36493,Ro01_G22952,Ro07_G34581,Ro06_G29363,Ro05_G31562 | 12 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1453:Ro05_G23057,Ro05_G31171 | AT5G55260 | PPX2, PPX-2; PPX2 (PROTEIN PHOSPHATASE X 2); protein serine/threonine phosphatase | GO:0008150|biological_process;GO:0004722|protein serine/threonine phosphatase activity;GO:0005575|cellular_component | Ro03_G32306,Ro01_G29977,Ro01_G30042,Ro03_G32273,Ro04_G36646,Ro04_G36684,Ro05_G31343,Ro06_G28125,Ro06_G28176,Ro05_G31353 | 12 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA57:Ro05_G30656,Ro05_G30654,Ro05_G30660,Ro05_G30661,Ro05_G30662,Ro05_G30658,Ro05_G30659 | AT3G48270||AT3G48280||AT5G24960||AT3G53290||AT1G11610||AT3G26200 | CYP71A26; CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B30P; CYP71B30P; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B22; CYP71B22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A25; CYP71A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A18; CYP71A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A14; CYP71A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0019825|oxygen binding;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro05_G30647,Ro05_G30648,Ro05_G30650,Ro05_G30652,Ro04_G36206 | 12 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1316:Ro04_G36583,Ro04_G36616;TA1410:Ro05_G12580,Ro05_G31473 | AT3G09680||AT5G02960 | 40S ribosomal protein S23 (RPS23B)||40S ribosomal protein S23 (RPS23A) | GO:0006412|translation;GO:0005730|nucleolus;GO:0022626|cytosolic ribosome;GO:0003735|structural constituent of ribosome;GO:0005840|ribosome;GO:0022627|cytosolic small ribosomal subunit | Ro02_G35606,Ro04_G00197,Ro06_G29395,Ro03_G32039,Ro05_G20015,Ro06_G13341,Ro05_G31141,Ro04_G36140 | 12 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA152:Ro07_G14633,Ro07_G14640,Ro07_G14642,Ro07_G21722,Ro07_G25731;TA594:Ro07_G21116,Ro07_G33854,Ro07_G33855 | AT2G44830||AT5G47750||AT3G15090 | D6PKL2, PK5; D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase||protein kinase, putative||oxidoreductase, zinc-binding dehydrogenase family protein | GO:0005739|mitochondrion;GO:0005488|binding;GO:0003824|catalytic activity;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0016491|oxidoreductase activity;GO:0008270|zinc ion binding;GO:0055114|oxidation reduction;GO:0005634|nucleus;GO:0008152|metabolic process;GO:0006468|protein amino acid phosphorylation;GO:0005737|cytoplasm;GO:0016301|kinase activity | Ro03_G10152,Ro03_G14682,Ro06_G03922,Ro07_G14641 | 12 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA499:Ro05_G30837,Ro05_G30835,Ro05_G30836;TA1164:Ro03_G32560,Ro03_G32559;TA1533:Ro05_G31546,Ro05_G31547;TA1535:Ro05_G31563,Ro05_G31564 | AT4G36220||AT5G57260||AT5G25120||AT5G07990||AT2G24180||AT1G13080||AT2G30750 | CYP71B6; CYP71B6 (CYTOCHROME P450 71B6); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B11; CYP71B11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B2; CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B10; CYP71B10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A12; CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||FAH1, CYP84A1; FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase||TT7, CYP75B1, D501; TT7 (TRANSPARENT TESTA 7); flavonoid 3'-monooxygenase/ oxygen binding | GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0009617|response to bacterium;GO:0016020|membrane;GO:0046424|ferulate 5-hydroxylase activity;GO:0020037|heme binding;GO:0005783|endoplasmic reticulum;GO:0009809|lignin biosynthetic process;GO:0005739|mitochondrion;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0016711|flavonoid 3'-monooxygenase activity;GO:0009813|flavonoid biosynthetic process;GO:0005506|iron ion binding;GO:0010286|heat acclimation;GO:0009699|phenylpropanoid biosynthetic process;GO:0010224|response to UV-B;GO:0005886|plasma membrane;GO:0009411|response to UV | Ro03_G32561,Ro05_G30559,Ro05_G30838 | 12 | 4 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30124,Ro06_G28383,Ro02_G34966,Ro03_G32718,Ro02_G35179,Ro05_G31615,Ro03_G32707,Ro05_G31608,Ro06_G21840,Ro07_G25534,Ro06_G28658 | 11 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30325,Ro03_G32423,Ro02_G24740,Ro02_G35447,Ro03_G31861,Ro03_G32750,Ro03_G33083,Ro05_G31445,Ro04_G36472,Ro07_G33909,Ro07_G34420 | 11 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G05850 | transposable element gene | - | Ro01_G30355,Ro05_G30604,Ro01_G30357,Ro04_G37011,Ro06_G29438,Ro05_G31226,Ro01_G30356,Ro06_G29437,Ro03_G32202,Ro07_G34097,Ro03_G32200 | 11 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA15:Ro02_G21471,Ro02_G35954,Ro02_G35955,Ro02_G35963,Ro02_G35969,Ro02_G35964,Ro02_G35961,Ro02_G35967,Ro02_G35968,Ro02_G35966,Ro02_G35960 | AT2G15490||AT4G34131||AT2G15480||AT4G34135||AT4G34138 | UGT73B1; UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase||UGT73B5; UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups||UGT73B2; UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase||UGT73B4; UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups||UGT73B3; UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring hexosyl groups | GO:0051555|flavonol biosynthetic process;GO:0016757|transferase activity, transferring glycosyl groups;GO:0051707|response to other organism;GO:0012505|endomembrane system;GO:0047893|flavonol 3-O-glucosyltransferase activity;GO:0010294|abscisic acid glucosyltransferase activity;GO:0008194|UDP-glycosyltransferase activity;GO:0035251|UDP-glucosyltransferase activity;GO:0016758|transferase activity, transferring hexosyl groups | - | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA17:Ro03_G32834,Ro03_G32835,Ro03_G32901,Ro03_G32900,Ro03_G32902,Ro03_G15690,Ro03_G32896,Ro03_G32899,Ro03_G15679,Ro03_G32895,Ro03_G15677 | AT1G69630||AT5G27750||AT1G13780||AT1G16930||AT4G13965||AT5G41840||AT4G00160||AT5G53635||AT5G56420||AT3G52680||AT2G26030 | ||F-box family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55030.1); Has 1305 Blast hits to 1279 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 1281; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27750.1); Has 1281 Blast hits to 1250 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA21:Ro01_G19821,Ro01_G29700,Ro01_G29698,Ro01_G29699,Ro01_G29719,Ro01_G29718,Ro01_G19813,Ro01_G29724,Ro01_G29722,Ro01_G29716 | AT5G66900||AT5G66910 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | Ro07_G11899 | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA22:Ro01_G29665,Ro01_G29667,Ro01_G01092,Ro01_G01091,Ro01_G29668,Ro01_G01089,Ro01_G01088,Ro01_G01087,Ro01_G01085,Ro01_G01084 | AT2G18193||AT2G18190||AT5G17760||AT3G50930 | AAA-type ATPase family protein||BCS1; BCS1 (CYTOCHROME BC1 SYNTHESIS); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | GO:0000166|nucleotide binding;GO:0005886|plasma membrane;GO:0016887|ATPase activity;GO:0012505|endomembrane system;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0017111|nucleoside-triphosphatase activity | Ro01_G29645 | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA25:Ro05_G31025,Ro05_G31021,Ro05_G31023,Ro05_G31022,Ro05_G31020,Ro05_G31026,Ro05_G31024,Ro05_G31015,Ro05_G31016,Ro05_G31017 | AT5G17540||AT3G03480 | CHAT; CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase||transferase family protein | GO:0010597|green leaf volatile biosynthetic process;GO:0010327|acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups | Ro05_G24248 | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA27:Ro07_G34406,Ro07_G34407,Ro07_G34400,Ro07_G34405,Ro07_G34401,Ro07_G34410,Ro07_G34409,Ro07_G34408,Ro07_G34417,Ro07_G34416 | AT3G14470||AT3G14460 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | Ro03_G32543 | 11 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1390:Ro05_G07367,Ro05_G07361;TA1423:Ro05_G14267,Ro05_G14278 | AT4G17800||AT5G46640||AT4G22810||AT4G12080||AT4G14465||AT2G45430||AT2G42940||AT1G20900||AT3G55560 | ESC, ORE7, AHL27; ESC (ESCAROLA); double-stranded DNA binding||DNA-binding family protein||DNA-binding protein-related||AGF2; AGF2 (AT-hook protein of GA feedback 2) | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0005739|mitochondrion;GO:0003680|AT DNA binding;GO:0003690|double-stranded DNA binding;GO:0005730|nucleolus;GO:0003677|DNA binding;GO:0009640|photomorphogenesis;GO:0006325|chromatin organization;GO:0008150|biological_process;GO:0010228|vegetative to reproductive phase transition of meristem;GO:0005634|nucleus;GO:0009647|skotomorphogenesis;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0010150|leaf senescence | Ro04_G12457,Ro07_G20808,Ro06_G09958,Ro06_G11296,Ro05_G20374,Ro07_G24004,Ro07_G07757 | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA29:Ro07_G25975,Ro07_G23162,Ro07_G23161,Ro07_G34308,Ro07_G23158,Ro07_G34306,Ro07_G23157,Ro07_G34315,Ro07_G23153;TA1893:Ro07_G25974,Ro07_G34310 | AT3G54440||AT3G55850||AT1G01340||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||LAF3, LAF3 ISF2; LAF3 (LONG AFTER FAR-RED 3); hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds||ATCNGC10, CNGC10, ACBK1; ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel||glycoside hydrolase family 2 protein | GO:0006811|ion transport;GO:0005516|calmodulin binding;GO:0016020|membrane;GO:0005975|carbohydrate metabolic process;GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0016810|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;GO:0006816|calcium ion transport;GO:0043169|cation binding;GO:0030246|carbohydrate binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0009507|chloroplast;GO:0004565|beta-galactosidase activity;GO:0006813|potassium ion transport;GO:0003824|catalytic activity;GO:0008150|biological_process;GO:0005242|inward rectifier potassium channel activity;GO:0016787|hydrolase activity;GO:0005886|plasma membrane;GO:0030551|cyclic nucleotide binding;GO:0005261|cation channel activity;GO:0048471|perinuclear region of cytoplasm | - | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA300:Ro01_G21585,Ro01_G30486,Ro01_G30485;TA1362:Ro04_G37132,Ro04_G37076 | - | - | - | Ro04_G37067,Ro04_G37068,Ro04_G37028,Ro04_G37097,Ro04_G37106,Ro04_G37156 | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA497:Ro05_G30702,Ro05_G30700,Ro05_G30701;TA1485:Ro05_G30554,Ro05_G30557 | AT3G17380 | meprin and TRAF homology domain-containing protein / MATH domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro05_G12119,Ro05_G30551,Ro05_G30561,Ro05_G30601,Ro05_G30723,Ro05_G31065 | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA548:Ro06_G28172,Ro06_G28171,Ro06_G28170;TA1721:Ro06_G28402,Ro06_G28416 | AT5G50260||AT5G45890 | SAG12; SAG12 (SENESCENCE-ASSOCIATED GENE 12); cysteine-type peptidase||cysteine proteinase, putative | GO:0006508|proteolysis;GO:0007568|aging;GO:0010282|senescence associated vacuole;GO:0012505|endomembrane system;GO:0009817|defense response to fungus, incompatible interaction;GO:0009723|response to ethylene stimulus;GO:0010150|leaf senescence | Ro06_G28157,Ro06_G28178,Ro06_G28248,Ro07_G33415,Ro07_G33424,Ro07_G34109 | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA66:Ro07_G33467,Ro07_G33465,Ro07_G33466,Ro07_G33463,Ro07_G33468,Ro07_G33464,Ro07_G33477;TA191:Ro02_G35586,Ro02_G35583,Ro02_G35582,Ro02_G35581 | AT4G12560||AT3G07870||AT3G23880 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 11 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1152:Ro03_G32317,Ro03_G32318;TA1153:Ro03_G32329,Ro03_G32335;TA1769:Ro06_G29446,Ro06_G27642 | - | - | - | Ro01_G30460,Ro02_G35528,Ro06_G27424,Ro07_G34054,Ro04_G37286 | 11 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA261:Ro06_G29289,Ro06_G29290,Ro06_G29288,Ro06_G29314;TA659:Ro01_G05003,Ro01_G29473;TA963:Ro02_G35777,Ro02_G35778 | AT5G17000||AT5G16990||AT5G16970||AT3G03080||AT3G23880 | NADP-dependent oxidoreductase, putative||F-box family protein||AT-AER; AT-AER (alkenal reductase); 2-alkenal reductase | GO:0006979|response to oxidative stress;GO:0032440|2-alkenal reductase activity;GO:0005488|binding;GO:0003674|molecular_function;GO:0046686|response to cadmium ion;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008270|zinc ion binding;GO:0005886|plasma membrane;GO:0055114|oxidation reduction;GO:0008150|biological_process;GO:0005634|nucleus;GO:0008152|metabolic process;GO:0005575|cellular_component;GO:0005829|cytosol | Ro02_G16195,Ro05_G31142,Ro05_G31212 | 11 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G29540 | ATRPC14, ATRPAC14; ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization | GO:0003677|DNA binding;GO:0005666|DNA-directed RNA polymerase III complex;GO:0003899|DNA-directed RNA polymerase activity;GO:0009304|tRNA transcription;GO:0046983|protein dimerization activity | Ro01_G29499,Ro02_G35101,Ro01_G29685,Ro06_G26733,Ro03_G32381,Ro07_G33280,Ro03_G32502,Ro04_G37293,Ro05_G31357,Ro06_G24469 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G11900 | ANT1; ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter | GO:0015173|aromatic amino acid transmembrane transporter activity;GO:0006865|amino acid transport;GO:0009624|response to nematode;GO:0015171|amino acid transmembrane transporter activity;GO:0015175|neutral amino acid transmembrane transporter activity;GO:0016020|membrane | Ro01_G29859,Ro06_G28716,Ro03_G33150,Ro06_G11364,Ro04_G37248,Ro05_G30657,Ro06_G28663,Ro06_G28405,Ro07_G33262,Ro06_G28342 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G29090 | reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | GO:0003676|nucleic acid binding;GO:0012505|endomembrane system | Ro01_G30007,Ro06_G28860,Ro05_G31039,Ro07_G33748,Ro05_G31190,Ro02_G35987,Ro02_G16540,Ro05_G31674,Ro07_G33774,Ro07_G25519 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30342,Ro05_G21891,Ro05_G13927,Ro05_G31003,Ro02_G35360,Ro07_G33440,Ro03_G32103,Ro06_G29106,Ro06_G28905,Ro07_G33913 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35322,Ro02_G35720,Ro06_G28008,Ro06_G28609,Ro03_G33232,Ro05_G30903,Ro05_G31035,Ro06_G29281,Ro02_G35328,Ro06_G29282 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G69530||AT2G40610||AT2G39700||AT2G28950||AT1G26770||AT2G03090 | ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6; ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)||ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA 1.1, EXP10; ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall||ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2; ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)||ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3; ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)||ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11; ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)||ATEXPA6, ATEXP6, ATHEXP ALPHA 1.8; ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) | GO:0005576|extracellular region;GO:0006949|syncytium formation;GO:0010114|response to red light;GO:0012505|endomembrane system;GO:0009831|plant-type cell wall modification during multidimensional cell growth;GO:0009739|response to gibberellin stimulus;GO:0009826|unidimensional cell growth;GO:0009505|plant-type cell wall;GO:0009828|plant-type cell wall loosening;GO:0005199|structural constituent of cell wall | Ro03_G08117,Ro04_G00051,Ro03_G10614,Ro07_G34601,Ro03_G12857,Ro06_G06114,Ro05_G03265,Ro06_G05709,Ro06_G17613,Ro07_G19428 | 10 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA150:Ro06_G28679,Ro06_G28678,Ro06_G18346,Ro06_G28695,Ro06_G28698 | AT5G55160||AT4G26840 | SUM2, SUMO 2, SUMO2, ATSUMO2; SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag||SUM1, SUMO 1, SUMO1, ATSUMO1; SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag | GO:0016925|protein sumoylation;GO:0005515|protein binding;GO:0009408|response to heat;GO:0005634|nucleus;GO:0031386|protein tag;GO:0005737|cytoplasm | Ro02_G19668,Ro06_G06684,Ro06_G28209,Ro06_G28215,Ro07_G26032 | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA23:Ro02_G35219,Ro02_G35218,Ro02_G35216,Ro02_G35215,Ro02_G35217,Ro02_G35222,Ro02_G35224,Ro02_G35223,Ro02_G35225,Ro02_G20830 | AT4G13010 | oxidoreductase, zinc-binding dehydrogenase family protein | GO:0009507|chloroplast;GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0008270|zinc ion binding;GO:0055114|oxidation reduction;GO:0008152|metabolic process;GO:0009535|chloroplast thylakoid membrane;GO:0005773|vacuole | - | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA26:Ro05_G31110,Ro05_G31096,Ro05_G31099,Ro05_G31101,Ro05_G31097,Ro05_G31098,Ro05_G31100,Ro05_G31116,Ro05_G31113,Ro05_G31112 | AT1G20925||AT1G76520||AT1G76530 | auxin efflux carrier family protein | GO:0009672|auxin:hydrogen symporter activity;GO:0009926|auxin polar transport;GO:0012505|endomembrane system;GO:0016021|integral to membrane | - | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA279:Ro07_G33581,Ro07_G21427,Ro07_G33584,Ro07_G33583 | AT5G62670||AT1G80660||AT3G42640||AT2G24520||AT2G18960 | AHA8; AHA8 (Arabidopsis H(+)-ATPase 8); ATPase||AHA9; AHA9; hydrogen-exporting ATPase, phosphorylative mechanism||AHA11; AHA11 (Arabidopsis H(+)-ATPase 11); ATPase||AHA5; AHA5 (Arabidopsis H(+)-ATPase 5); ATPase||AHA1, PMA, OST2; AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism / protein binding | GO:0015992|proton transport;GO:0009414|response to water deprivation;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0006754|ATP biosynthetic process;GO:0016887|ATPase activity;GO:0008553|hydrogen-exporting ATPase activity, phosphorylative mechanism;GO:0010119|regulation of stomatal movement;GO:0009737|response to abscisic acid stimulus;GO:0005634|nucleus;GO:0008152|metabolic process;GO:0006812|cation transport;GO:0016020|membrane;GO:0005773|vacuole | Ro01_G05097,Ro02_G00794,Ro04_G18275,Ro05_G11780,Ro05_G16452,Ro06_G25099 | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA28:Ro07_G34511,Ro07_G34506,Ro07_G34512,Ro07_G34509,Ro07_G34510,Ro07_G34508,Ro07_G18783,Ro07_G34507,Ro07_G34514,Ro07_G18779 | AT5G01150||AT3G09120||AT5G01130||AT5G06600||AT5G43240 | unknown protein||UBP12; UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease | GO:0003674|molecular_function;GO:0003690|double-stranded DNA binding;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0006265|DNA topological change | - | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA33:Ro02_G35484,Ro02_G35494,Ro02_G35498,Ro02_G27903,Ro02_G35499,Ro02_G35497,Ro02_G35496,Ro02_G35495 | AT2G34357 | binding | GO:0008150|biological_process;GO:0005575|cellular_component | Ro01_G03034,Ro02_G16573 | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA482:Ro05_G12978,Ro05_G12974,Ro05_G31230 | AT4G31140||AT5G58090 | glycosyl hydrolase family 17 protein | GO:0031225|anchored to membrane;GO:0046658|anchored to plasma membrane;GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0043169|cation binding;GO:0009505|plant-type cell wall;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005773|vacuole | Ro01_G30330,Ro02_G35449,Ro02_G35837,Ro03_G33086,Ro04_G36464,Ro07_G33906,Ro05_G31453 | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA49:Ro04_G00030,Ro04_G36241,Ro04_G36236,Ro04_G36240,Ro04_G36237,Ro04_G00028,Ro04_G36238 | AT1G69480||AT1G14040||AT3G29060 | LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 732 Blast hits to 696 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 246; Plants - 151; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).||EXS family protein / ERD1/XPR1/SYG1 family protein||LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14040.1); Has 970 Blast hits to 889 proteins in 159 species: Archae - 2; Bacteria - 5; Metazoa - 379; Fungi - 260; Plants - 176; Viruses - 28; Other Eukaryotes - 120 (source: NCBI BLink). | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0016021|integral to membrane | Ro04_G08545,Ro06_G28904,Ro06_G28723 | 10 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA123:Ro03_G32232,Ro03_G32233,Ro03_G32234,Ro03_G25979,Ro03_G25980;TA412:Ro03_G32145,Ro03_G32160,Ro03_G32167 | AT3G15850 | FAD5, FADB, JB67, ADS3; FAD5 (FATTY ACID DESATURASE 5); 16:0 monogalactosyldiacylglycerol desaturase/ oxidoreductase | GO:0009579|thylakoid;GO:0009979|16:0 monogalactosyldiacylglycerol desaturase activity;GO:0016491|oxidoreductase activity;GO:0010205|photoinhibition;GO:0006636|unsaturated fatty acid biosynthetic process | Ro03_G23781,Ro03_G26572 | 10 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA549:Ro06_G28273,Ro06_G28268,Ro06_G28269;TA1742:Ro06_G28662,Ro06_G28661 | AT3G51550 | FER; FER (FERONIA); kinase/ protein kinase | GO:0005886|plasma membrane;GO:0043680|filiform apparatus;GO:0004672|protein kinase activity;GO:0009791|post-embryonic development;GO:0046777|protein amino acid autophosphorylation;GO:0016301|kinase activity;GO:0016020|membrane;GO:0010483|pollen tube reception | Ro04_G36567,Ro02_G35924,Ro02_G36021,Ro03_G32223,Ro06_G28274 | 10 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA698:Ro01_G21396,Ro01_G30476;TA1363:Ro04_G37136,Ro04_G37137 | ATCG00900 | RPS7.1, RPS7; encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex | GO:0009507|chloroplast | Ro04_G37027,Ro04_G37065,Ro04_G37093,Ro04_G37107,Ro04_G37000,Ro04_G37154 | 10 | 2 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G26262,Ro05_G31347,Ro05_G31342,Ro03_G32272,Ro06_G28175,Ro04_G36645,Ro06_G28123,Ro04_G36683,Ro05_G19581 | 9 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G35100 | ARAD1; ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0045489|pectin biosynthetic process;GO:0016020|membrane | Ro01_G30208,Ro04_G36531,Ro02_G35238,Ro06_G22310,Ro03_G05867,Ro04_G36259,Ro03_G32122,Ro07_G33672,Ro06_G28835 | 9 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30343,Ro07_G34136,Ro02_G34865,Ro06_G29041,Ro03_G32696,Ro07_G34209,Ro03_G32941,Ro05_G31603,Ro07_G34768 | 9 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30366,Ro02_G35875,Ro05_G31566,Ro03_G31801,Ro06_G28188,Ro05_G30956,Ro07_G33616,Ro07_G33755,Ro06_G29433 | 9 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G24080 | KRR1 family protein | GO:0003674|molecular_function;GO:0005829|cytosol | Ro02_G35990,Ro06_G28436,Ro03_G32645,Ro04_G27249,Ro04_G36668,Ro05_G30917,Ro04_G36781,Ro04_G36666,Ro05_G20756 | 9 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA155:Ro07_G24857,Ro07_G24858,Ro07_G33389,Ro07_G24860,Ro07_G22801 | - | - | - | Ro01_G03186,Ro03_G26917,Ro07_G22780,Ro07_G07942 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA288:Ro07_G34476,Ro07_G34477,Ro07_G34483,Ro07_G34481 | AT5G53130||AT3G48010 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC16, CNGC16; ATCNGC16; calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | Ro01_G30242,Ro07_G33927,Ro07_G33938,Ro01_G30240,Ro01_G30241 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA31:Ro07_G34283,Ro07_G34281,Ro07_G34286,Ro07_G27151,Ro07_G34291,Ro07_G34294,Ro07_G25336,Ro07_G34288,Ro07_G34298 | AT5G07900 | mitochondrial transcription termination factor family protein / mTERF family protein | GO:0016020|membrane | - | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA34:Ro03_G31936,Ro03_G31932,Ro03_G31934,Ro03_G31928,Ro03_G31931,Ro03_G31930,Ro03_G31937,Ro03_G10756 | AT3G09110||AT5G01140||AT5G01120||AT5G01150||AT5G43240||AT2G26390 | unknown protein||serpin, putative / serine protease inhibitor, putative | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0004867|serine-type endopeptidase inhibitor activity | Ro01_G30304 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA463:Ro04_G36301,Ro04_G36298,Ro04_G36299 | AT2G45560||AT2G45550 | CYP76C1; CYP76C1; electron carrier/ heme binding / iron ion binding / monooxygenase||CYP76C4; CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro04_G36268,Ro04_G36290,Ro06_G09212,Ro07_G33746,Ro07_G33772,Ro03_G32626 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA769:Ro01_G30091,Ro01_G02280 | AT4G40040||AT4G40050||AT1G09200 | signal transducer||histone H3.2||histone H3 | GO:0009507|chloroplast;GO:0006334|nucleosome assembly;GO:0003677|DNA binding;GO:0008150|biological_process;GO:0005634|nucleus;GO:0004871|signal transducer activity;GO:0005575|cellular_component;GO:0000786|nucleosome | Ro01_G12230,Ro02_G34841,Ro03_G31999,Ro03_G26880,Ro04_G36685,Ro05_G31686,Ro03_G05180 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA85:Ro04_G36923,Ro04_G36985,Ro04_G12446,Ro04_G36984,Ro04_G36983,Ro04_G12439 | AT1G06650||AT5G59540||AT1G06620 | oxidoreductase, 2OG-Fe(II) oxygenase family protein||2-oxoglutarate-dependent dioxygenase, putative | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0010302|2-oxoglutarate-dependent dioxygenase activity;GO:0016491|oxidoreductase activity | Ro02_G27140,Ro02_G08016,Ro06_G04361 | 9 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA118:Ro02_G35639,Ro02_G35642,Ro02_G35644,Ro02_G35645,Ro02_G35643;TA509:Ro05_G31574,Ro05_G31577,Ro05_G31576 | AT5G64410||AT1G09930 | ATOPT4, OPT4; OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter||ATOPT2; ATOPT2; oligopeptide transporter | GO:0005886|plasma membrane;GO:0016020|membrane;GO:0015198|oligopeptide transporter activity;GO:0006857|oligopeptide transport | Ro03_G26745 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA163:Ro07_G34262,Ro07_G34265,Ro07_G25640,Ro07_G25644,Ro07_G25646;TA1883:Ro07_G24532,Ro07_G24535 | AT1G60500 | dynamin family protein | GO:0008150|biological_process;GO:0005525|GTP binding;GO:0005575|cellular_component;GO:0003924|GTPase activity | Ro04_G00339,Ro05_G24376 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA209:Ro03_G32660,Ro03_G32663,Ro03_G32659,Ro03_G16940;TA423:Ro03_G32673,Ro03_G32655,Ro03_G32656 | AT5G54660||AT3G14470||AT3G14460||AT1G58410 | disease resistance protein (NBS-LRR class), putative||disease resistance protein (CC-NBS-LRR class), putative||heat shock protein-related | GO:0003674|molecular_function;GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0006952|defense response;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro03_G32545,Ro03_G32543 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA210:Ro03_G32683,Ro03_G32689,Ro03_G32684,Ro03_G32726;TA1911:Ro07_G33422,Ro07_G33423 | AT3G48280||AT3G48270 | CYP71A25; CYP71A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A26; CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0019825|oxygen binding | Ro03_G32107,Ro03_G32699,Ro02_G35428 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA218:Ro04_G11408,Ro04_G11409,Ro04_G11405,Ro04_G11400;TA1044:Ro03_G13376,Ro03_G33070 | AT4G25810||AT5G57540||AT1G17020||AT3G23730||AT4G25300||AT4G14130 | SRG1, ATSRG1; SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and inc||xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative||oxidoreductase, 2OG-Fe(II) oxygenase family protein||XTR6, XTH23; XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase||XTR7; XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase | GO:0009813|flavonoid biosynthetic process;GO:0006073|cellular glucan metabolic process;GO:0016762|xyloglucan:xyloglucosyl transferase activity;GO:0010260|organ senescence;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0016798|hydrolase activity, acting on glycosyl bonds;GO:0016682|oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor;GO:0016491|oxidoreductase activity;GO:0006499|N-terminal protein myristoylation;GO:0016706|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0005575|cellular_component;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | Ro04_G17952,Ro07_G17279,Ro04_G21379 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA222:Ro04_G17685,Ro04_G17686,Ro04_G14550,Ro04_G36546;TA451:Ro04_G17680,Ro04_G17681,Ro04_G36534 | AT5G26340 | MSS1, STP13; MSS1; carbohydrate transmembrane transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose symporter/ sugar:hydrogen symporter | GO:0005351|sugar:hydrogen symporter activity;GO:0016310|phosphorylation;GO:0005886|plasma membrane;GO:0015144|carbohydrate transmembrane transporter activity;GO:0005358|high-affinity hydrogen:glucose symporter activity;GO:0016020|membrane;GO:0009679|hexose:hydrogen symporter activity | Ro04_G36843,Ro04_G36618 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA329:Ro02_G16190,Ro02_G35779,Ro02_G16196;TA972:Ro02_G35912,Ro02_G35919 | AT1G45000||AT3G53230||AT5G03340 | cell division cycle protein 48, putative / CDC48, putative||26S proteasome regulatory complex subunit p42D, putative | GO:0005488|binding;GO:0046686|response to cadmium ion;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005515|protein binding;GO:0016887|ATPase activity;GO:0030163|protein catabolic process;GO:0016787|hydrolase activity;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016020|membrane;GO:0005829|cytosol;GO:0005618|cell wall | Ro02_G35901,Ro06_G29055,Ro05_G13197,Ro04_G36441 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA58:Ro05_G31525,Ro05_G31537,Ro05_G31536,Ro05_G31540,Ro05_G31539,Ro05_G31538,Ro05_G19991;TA1477:Ro05_G26993,Ro05_G27104 | - | - | - | - | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA61:Ro06_G28411,Ro06_G09147,Ro06_G28407,Ro06_G28409,Ro06_G28414,Ro06_G28413,Ro06_G06597;TA1630:Ro06_G14354,Ro06_G14355 | AT3G21250||AT5G14860 | transferase, transferring glycosyl groups||ATMRP6, MRP6; ATMRP6; ATPase, coupled to transmembrane movement of substances | GO:0016757|transferase activity, transferring glycosyl groups;GO:0000325|plant-type vacuole;GO:0005886|plasma membrane;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0008152|metabolic process;GO:0005774|vacuolar membrane;GO:0005575|cellular_component | - | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA681:Ro01_G14172,Ro01_G30482;TA1357:Ro04_G37104,Ro04_G37105 | ATCG00840 | RPL23.1, RPL23; One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex | GO:0006412|translation;GO:0009507|chloroplast;GO:0003735|structural constituent of ribosome;GO:0000311|plastid large ribosomal subunit | Ro04_G37004,Ro04_G37049,Ro04_G37052,Ro04_G37073,Ro04_G37135 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA71:Ro02_G01627,Ro02_G01626,Ro02_G01625,Ro02_G01624,Ro02_G01623,Ro02_G01621;TA899:Ro02_G23486,Ro02_G23484 | AT4G31980||AT4G39660||AT3G50170 | AGT2; AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase||unknown protein | GO:0003674|molecular_function;GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016020|membrane | Ro07_G25641 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA796:Ro01_G30474,Ro01_G30477;TA1356:Ro04_G37095,Ro04_G37096 | ATCG00830 | RPL2.1; encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | GO:0009507|chloroplast | Ro04_G37046,Ro04_G37066,Ro04_G14173,Ro04_G37003,Ro04_G37131 | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA90:Ro06_G15697,Ro06_G15694,Ro06_G28497,Ro06_G24070,Ro06_G28493,Ro06_G28494;TA443:Ro04_G12658,Ro04_G12657,Ro04_G36949 | AT1G78960||AT1G78955||AT1G78950||AT2G07050 | CAS1; CAS1 (cycloartenol synthase 1); cycloartenol synthase||ATLUP2; ATLUP2; beta-amyrin synthase/ lupeol synthase||CAMS1; CAMS1 (Camelliol C synthase 1); beta-amyrin synthase||beta-amyrin synthase, putative | GO:0019745|pentacyclic triterpenoid biosynthetic process;GO:0016104|triterpenoid biosynthetic process;GO:0010027|thylakoid membrane organization;GO:0009555|pollen development;GO:0042300|beta-amyrin synthase activity;GO:0042299|lupeol synthase activity;GO:0016871|cycloartenol synthase activity;GO:0005575|cellular_component;GO:0005773|vacuole | - | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA98:Ro07_G33394,Ro07_G33395,Ro07_G33400,Ro07_G33398,Ro07_G33401,Ro07_G33399;TA601:Ro07_G25970,Ro07_G33406,Ro07_G33405 | AT3G61220||AT2G24190 | short-chain dehydrogenase/reductase (SDR) family protein | GO:0047504|(-)-menthol dehydrogenase activity;GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0047501|(+)-neomenthol dehydrogenase activity;GO:0008152|metabolic process;GO:0006952|defense response;GO:0005575|cellular_component | - | 9 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA320:Ro02_G03116,Ro02_G26108,Ro02_G26110;TA617:Ro07_G33840,Ro07_G25060,Ro07_G33842;TA976:Ro02_G36030,Ro02_G25374 | AT1G06620 | 2-oxoglutarate-dependent dioxygenase, putative | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0010302|2-oxoglutarate-dependent dioxygenase activity | Ro07_G17284 | 9 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA798:Ro01_G30480,Ro01_G14169;TA1365:Ro04_G37142,Ro04_G37141;TA1359:Ro04_G37112,Ro04_G37108 | ATCG00860 | YCF2.1; Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally. | GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016020|membrane | Ro04_G37054,Ro04_G37079,Ro04_G37111 | 9 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA799:Ro01_G30484,Ro01_G30483;TA1358:Ro04_G37110,Ro04_G37109;TA1364:Ro04_G37140,Ro04_G37143 | ATCG00860 | YCF2.1; Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally. | GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016020|membrane | Ro04_G37077,Ro04_G14171,Ro04_G37053 | 9 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA957:Ro02_G35615,Ro02_G35616;TA1955:Ro07_G34046,Ro07_G34047;TA1472:Ro05_G26759,Ro05_G31211 | - | - | - | Ro03_G32217,Ro06_G29300,Ro07_G34246 | 9 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G26100||AT1G72710||AT4G28540||AT3G23340||AT4G14340||AT4G28880 | CK1, CKL1; CK1 (CASEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CKL2; CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CKL6, PAPK1; CKL6 (CASEIN KINASE I-LIKE 6); kinase/ protein serine/threonine kinase||ckl3; ckl3 (Casein Kinase I-like 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CKI1, CKL11; CKI1 (CASEIN KINASE I); kinase/ protein serine/threonine kinase||ckl10; ckl10 (Casein Kinase I-like 10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0016310|phosphorylation;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0005634|nucleus;GO:0006468|protein amino acid phosphorylation;GO:0005737|cytoplasm;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0009506|plasmodesma | Ro01_G02925,Ro06_G18962,Ro02_G13774,Ro01_G30214,Ro04_G12774,Ro02_G00707,Ro04_G36915,Ro01_G10498 | 8 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30040,Ro03_G06651,Ro01_G30301,Ro06_G28328,Ro02_G36080,Ro04_G17015,Ro07_G17030,Ro03_G33178 | 8 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G76140||AT1G76160||AT4G22010||AT3G04840 | sks4; sks4 (SKU5 Similar 4); copper ion binding / oxidoreductase||serine-type endopeptidase/ serine-type peptidase||sks5; sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase||40S ribosomal protein S3A (RPS3aA) | GO:0008236|serine-type peptidase activity;GO:0009507|chloroplast;GO:0006508|proteolysis;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0022626|cytosolic ribosome;GO:0003735|structural constituent of ribosome;GO:0006412|translation;GO:0005507|copper ion binding;GO:0009505|plant-type cell wall;GO:0004252|serine-type endopeptidase activity;GO:0016020|membrane;GO:0022627|cytosolic small ribosomal subunit;GO:0005618|cell wall | Ro02_G10411,Ro02_G19272,Ro06_G06737,Ro03_G13482,Ro07_G33425,Ro05_G31153,Ro06_G23677,Ro06_G16062 | 8 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G23290||AT2G42610||AT1G07090||AT5G28490 | LSH6; LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)||LSH10; LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)||LSH1; LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)||LSH4; LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) | ;GO:0003674|molecular_function;GO:0009637|response to blue light;GO:0010114|response to red light;GO:0008150|biological_process;GO:0010218|response to far red light;GO:0005634|nucleus;GO:0009826|unidimensional cell growth;GO:0009416|response to light stimulus;GO:0005575|cellular_component | Ro02_G13789,Ro03_G05247,Ro03_G10380,Ro03_G06325,Ro04_G24814,Ro03_G15817,Ro06_G22545,Ro06_G11313 | 8 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G02210 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro02_G27141,Ro02_G35426,Ro06_G22459,Ro02_G35548,Ro07_G18688,Ro03_G21288,Ro04_G21371,Ro07_G33502 | 8 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA1134:Ro03_G32056,Ro03_G32055 | AT2G37170||AT3G53420||AT4G35100||AT3G54820||AT4G00430||AT4G23400||AT1G01620 | PIP1D, PIP1;5; PIP1;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;5); water channel||PIP2A, PIP2, PIP2;1; PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel||TMP-C, PIP1;4, PIP1E; PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel||PIP1C, TMP-B, PIP1;3; PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel||PIP2B, PIP2;2; PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel||PIP2D, PIP2;5; PIP2;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;5); water channel||PIP3, PIP3A, PIP2;7, SIMIP; PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel | GO:0009507|chloroplast;GO:0009414|response to water deprivation;GO:0046658|anchored to plasma membrane;GO:0006833|water transport;GO:0005886|plasma membrane;GO:0006810|transport;GO:0009651|response to salt stress;GO:0016021|integral to membrane;GO:0015250|water channel activity;GO:0016020|membrane;GO:0005773|vacuole | Ro02_G35306,Ro07_G34454,Ro06_G29051,Ro05_G11436,Ro07_G34570,Ro07_G04317 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1391:Ro05_G07605,Ro05_G31278 | - | - | - | Ro03_G23780,Ro07_G33982,Ro07_G34142,Ro06_G29136,Ro06_G13599,Ro06_G28226 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1446:Ro05_G22168,Ro05_G09358 | AT1G78300||AT1G22300||AT5G65430||AT2G42590||AT1G26480||AT5G10450||AT3G02510 | GRF2, 14-3-3OMEGA, GF14 OMEGA; GRF2 (GENERAL REGULATORY FACTOR 2); protein binding / protein phosphorylated amino acid binding||regulator of chromosome condensation (RCC1) family protein||GRF10, 14-3-3EPSILON, GF14 EPSILON; GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding||GRF12, GF14 IOTA; GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding||GRF9, GF14 MU; GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding||GRF6, AFT1, 14-3-3lambda; GRF6 (G-box regulating factor 6); protein binding / protein phosphorylated amino acid binding||GRF8, 14-3-3KAPPA, GF14 KAPPA; GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid binding | GO:0009505|plant-type cell wall;GO:0005524|ATP binding;GO:0016310|phosphorylation;GO:0005739|mitochondrion;GO:0005829|cytosol;GO:0005773|vacuole;GO:0009507|chloroplast;GO:0003682|chromatin binding;GO:0046686|response to cadmium ion;GO:0042742|defense response to bacterium;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005509|calcium ion binding;GO:0005737|cytoplasm;GO:0008536|Ran GTPase binding;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0045309|protein phosphorylated amino acid binding;GO:0009570|chloroplast stroma;GO:0009742|brassinosteroid mediated signaling pathway;GO:0005575|cellular_component;GO:0005618|cell wall | Ro01_G18483,Ro02_G25987,Ro03_G05242,Ro04_G15174,Ro05_G14156,Ro06_G21476 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA148:Ro06_G28549,Ro06_G20961,Ro06_G28548,Ro06_G28546,Ro06_G28545 | AT1G16090||AT1G16130||AT1G16260||AT1G16120||AT1G79670 | WAKL2; WAKL2 (wall associated kinase-like 2); kinase||RFO1, WAKL22; RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase||WAKL7; WAKL7 (wall associated kinase-like 7); protein serine/threonine kinase||WAKL1; WAKL1 (wall associated kinase-like 1); kinase||protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0006468|protein amino acid phosphorylation;GO:0009620|response to fungus;GO:0016301|kinase activity;GO:0005618|cell wall | Ro05_G31384,Ro06_G14368,Ro04_G36289 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA267:Ro07_G19596,Ro07_G23969,Ro07_G23968,Ro07_G23967 | AT5G48400||AT1G14060||AT4G11650||AT3G07520 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02210.1); Has 243 Blast hits to 215 proteins in 60 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 27; Plants - 49; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).||ATOSM34; ATOSM34 (osmotin 34)||ATGLR1.2, GLR1.2; ATGLR1.2; intracellular ligand-gated ion channel||ATGLR1.4, GLR1.4; GLR1.4 (GLUTAMATE RECEPTOR 1.4); cation channel/ intracellular ligand-gated ion channel | GO:0005217|intracellular ligand-gated ion channel activity;GO:0005515|protein binding;GO:0051707|response to other organism;GO:0012505|endomembrane system;GO:0030003|cellular cation homeostasis;GO:0009651|response to salt stress;GO:0006874|cellular calcium ion homeostasis;GO:0005261|cation channel activity;GO:0009816|defense response to bacterium, incompatible interaction;GO:0009416|response to light stimulus;GO:0009817|defense response to fungus, incompatible interaction;GO:0016020|membrane;GO:0006499|N-terminal protein myristoylation | Ro07_G18082,Ro07_G33770,Ro07_G33794,Ro04_G26196 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA36:Ro04_G36946,Ro04_G36945,Ro04_G36961,Ro04_G36956,Ro04_G36959,Ro04_G36958,Ro04_G36957,Ro04_G36960 | AT1G33540||AT3G12240 | scpl18; scpl18 (serine carboxypeptidase-like 18); serine-type carboxypeptidase||SCPL15; SCPL15 (serine carboxypeptidase-like 15); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0012505|endomembrane system | - | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA40:Ro02_G25780,Ro02_G21240,Ro02_G21241,Ro02_G16376,Ro02_G16377,Ro02_G25047,Ro02_G25050 | AT2G29110||AT2G29120||AT2G24720||AT4G31710 | ATGLR2.2, GLR2.2; ATGLR2.2; intracellular ligand-gated ion channel||ATGLR2.8, GLR2.8; ATGLR2.8; intracellular ligand-gated ion channel||ATGLR2.4, GLR2.4; ATGLR2.4; intracellular ligand-gated ion channel||ATGLR2.7, GLR2.7; ATGLR2.7; intracellular ligand-gated ion channel | GO:0009624|response to nematode;GO:0005217|intracellular ligand-gated ion channel activity;GO:0012505|endomembrane system;GO:0006874|cellular calcium ion homeostasis;GO:0009416|response to light stimulus;GO:0016020|membrane;GO:0005773|vacuole | Ro02_G10462 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA46:Ro03_G32759,Ro03_G32757,Ro03_G32760,Ro03_G32768,Ro03_G32769,Ro03_G32772,Ro03_G32770 | AT4G38830||AT5G10530||AT4G21410||AT4G23180 | CRK10, RLK4; CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase||lectin protein kinase, putative||protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0005524|ATP binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity;GO:0005773|vacuole | Ro03_G32803 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA48:Ro03_G33133,Ro03_G33135,Ro03_G05318,Ro03_G05315,Ro03_G33124,Ro03_G33123,Ro03_G33125 | AT1G07650||AT1G29750 | leucine-rich repeat transmembrane protein kinase, putative||RKF1; RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0004702|receptor signaling protein serine/threonine kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro03_G18596 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA56:Ro05_G22455,Ro05_G31510,Ro05_G17817,Ro05_G31504,Ro05_G17811,Ro05_G31519,Ro05_G31520 | AT1G09645||AT1G09640||AT1G57720 | elongation factor 1B-gamma, putative / eEF-1B gamma, putative||unknown protein | GO:0003674|molecular_function;GO:0006414|translational elongation;GO:0046686|response to cadmium ion;GO:0003746|translation elongation factor activity;GO:0005886|plasma membrane;GO:0008150|biological_process;GO:0005507|copper ion binding;GO:0010043|response to zinc ion;GO:0005575|cellular_component;GO:0016020|membrane;GO:0005773|vacuole;GO:0005618|cell wall | Ro05_G12980 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA62:Ro06_G28528,Ro06_G28538,Ro06_G28540,Ro06_G28537,Ro06_G28539,Ro06_G28541,Ro06_G28542 | AT1G17840 | WBC11, ABCG11, DSO, COF1, ATWBC11; WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0009897|external side of plasma membrane;GO:0015908|fatty acid transport;GO:0015245|fatty acid transporter activity | Ro01_G29858 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA766:Ro01_G30039,Ro01_G30047 | AT3G47110||AT3G47090||AT3G47570 | leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro03_G32198,Ro07_G34351,Ro03_G32608,Ro01_G30299,Ro01_G30443,Ro07_G34576 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA772:Ro01_G30162,Ro01_G24894 | AT3G18670 | ankyrin repeat family protein | GO:0005515|protein binding | Ro02_G02306,Ro04_G37294,Ro01_G30335,Ro06_G28313,Ro04_G36218,Ro02_G23564 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA847:Ro02_G09628,Ro02_G09629 | AT1G08880||AT5G27290||AT1G51060||AT5G54640||AT5G02560||AT5G27670 | HTA5, H2AXA, G-H2AX, GAMMA-H2AX; H2AXA; DNA binding||unknown protein||HTA1, RAT5; RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5); DNA binding||HTA7; HTA7 (HISTONE H2A 7); DNA binding||HTA12; HTA12; DNA binding||HTA10; HTA10; DNA binding | GO:0009507|chloroplast;GO:0006334|nucleosome assembly;GO:0005730|nucleolus;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0009294|DNA mediated transformation;GO:0009617|response to bacterium;GO:0000786|nucleosome;GO:0009611|response to wounding;GO:0005618|cell wall | Ro06_G15073,Ro03_G10524,Ro03_G16919,Ro06_G06164,Ro06_G18525,Ro03_G02026 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA87:Ro05_G31462,Ro05_G31461,Ro05_G31465,Ro05_G31467,Ro05_G31466,Ro05_G31482 | AT1G22540 | proton-dependent oligopeptide transport (POT) family protein | GO:0005215|transporter activity;GO:0016020|membrane;GO:0006857|oligopeptide transport | Ro04_G36566,Ro01_G30256 | 8 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1046:Ro03_G13424,Ro03_G13421;TA1734:Ro06_G28525,Ro06_G09967 | AT2G34430||AT1G29930||AT1G29910||AT5G54270||AT2G05070 | CAB1, AB140, CAB140, LHCB1.3; CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding||LHB1B1, LHCB1.4; LHB1B1; chlorophyll binding||LHCB3, LHCB3*1; LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule||LHCB2.2, LHCB2; LHCB2.2; chlorophyll binding||CAB3, AB180, LHCB1.2; CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | GO:0009507|chloroplast;GO:0030076|light-harvesting complex;GO:0005739|mitochondrion;GO:0010287|plastoglobule;GO:0009579|thylakoid;GO:0009765|photosynthesis, light harvesting;GO:0005886|plasma membrane;GO:0005198|structural molecule activity;GO:0015979|photosynthesis;GO:0009535|chloroplast thylakoid membrane;GO:0009941|chloroplast envelope;GO:0016020|membrane;GO:0016168|chlorophyll binding | Ro01_G11269,Ro03_G22595,Ro06_G17315,Ro06_G20151 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA121:Ro03_G32172,Ro03_G21751,Ro03_G21749,Ro03_G21747,Ro03_G21746;TA1051:Ro03_G13499,Ro03_G13501 | AT1G20140||AT2G25700||AT1G11925 | ASK3; ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase||ASK4; ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase||Encodes a Stigma-specific Stig1 family protein | GO:0003674|molecular_function;GO:0005515|protein binding;GO:0005730|nucleolus;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0008150|biological_process;GO:0005634|nucleus;GO:0004842|ubiquitin-protein ligase activity;GO:0019005|SCF ubiquitin ligase complex;GO:0005737|cytoplasm;GO:0005575|cellular_component | Ro03_G27394 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA170:Ro01_G29466,Ro01_G29465,Ro01_G29468,Ro01_G29467;TA1320:Ro04_G36624,Ro04_G36623 | AT1G05675||AT2G31790||AT2G43820||AT1G05680 | ||GT, UGT74F2; UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups||UDP-glucoronosyl/UDP-glucosyl transferase family protein | ;GO:0016757|transferase activity, transferring glycosyl groups;GO:0035251|UDP-glucosyltransferase activity;GO:0046482|para-aminobenzoic acid metabolic process;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | Ro05_G31064,Ro01_G30110 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA171:Ro01_G29811,Ro01_G29809,Ro01_G29812,Ro01_G29808;TA751:Ro01_G29900,Ro01_G11680 | AT4G12560||AT3G06240||AT3G23880 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | Ro01_G29893,Ro04_G37253 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA196:Ro02_G36051,Ro02_G36052,Ro02_G36049,Ro02_G36053;TA304:Ro01_G29797,Ro01_G04284,Ro01_G29796 | AT4G37760||AT1G58440 | SQE3; SQE3 (squalene epoxidase 3); squalene monooxygenase||XF1, SQE1; XF1; squalene monooxygenase | GO:0009414|response to water deprivation;GO:0016126|sterol biosynthetic process;GO:0004506|squalene monooxygenase activity;GO:0012505|endomembrane system;GO:0009753|response to jasmonic acid stimulus;GO:0016021|integral to membrane;GO:0009611|response to wounding | Ro02_G04421 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA212:Ro03_G32905,Ro03_G32907,Ro03_G32908,Ro03_G32906;TA691:Ro01_G19587,Ro01_G30232 | AT1G56140||AT1G56145||AT5G63710||AT1G56130 | leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0016020|membrane | Ro01_G29872,Ro03_G31853 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA252:Ro06_G28748,Ro06_G28752,Ro06_G28751,Ro06_G28750;TA558:Ro06_G28746,Ro06_G28747,Ro06_G16831 | AT5G02700||AT4G10400||AT5G56420 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G28749 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA266:Ro07_G13584,Ro07_G13587,Ro07_G13591,Ro07_G34135;TA622:Ro07_G34120,Ro07_G11502,Ro07_G25238 | AT5G13740||AT5G13750 | ZIFL1; ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline:hydrogen antiporter||ZIF1; ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter | GO:0009624|response to nematode;GO:0005351|sugar:hydrogen symporter activity;GO:0015520|tetracycline:hydrogen antiporter activity;GO:0015144|carbohydrate transmembrane transporter activity;GO:0016021|integral to membrane;GO:0055069|zinc ion homeostasis;GO:0010043|response to zinc ion;GO:0009705|plant-type vacuole membrane;GO:0016020|membrane | Ro07_G23594 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA593:Ro07_G21114,Ro07_G06583,Ro07_G33759;TA615:Ro07_G33722,Ro07_G06587,Ro07_G33733 | AT3G54140||AT1G32450||AT4G21680 | NRT1.5; NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter||proton-dependent oligopeptide transport (POT) family protein||ATPTR1, PTR1; PTR1 (PEPTIDE TRANSPORTER 1); dipeptide transporter/ transporter/ tripeptide transporter | GO:0016020|membrane;GO:0042939|tripeptide transport;GO:0015112|nitrate transmembrane transporter activity;GO:0005886|plasma membrane;GO:0042936|dipeptide transporter activity;GO:0042938|dipeptide transport;GO:0015706|nitrate transport;GO:0010167|response to nitrate;GO:0006807|nitrogen compound metabolic process;GO:0042937|tripeptide transporter activity;GO:0005215|transporter activity;GO:0006857|oligopeptide transport | Ro03_G06220,Ro05_G07412 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA607:Ro07_G33336,Ro07_G33337,Ro07_G04343;TA608:Ro07_G33340,Ro07_G33338,Ro07_G04346 | AT1G53940||AT3G09740||AT5G40990 | GLIP2; GLIP2; arylesterase/ carboxylesterase/ lipase||GLIP1; GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase||SYP71, ATSYP71; SYP71 (SYNTAXIN OF PLANTS 71); protein transporter | GO:0006886|intracellular protein transport;GO:0005886|plasma membrane;GO:0006612|protein targeting to membrane;GO:0008565|protein transporter activity;GO:0012505|endomembrane system;GO:0005615|extracellular space;GO:0016298|lipase activity;GO:0004091|carboxylesterase activity;GO:0042742|defense response to bacterium;GO:0016021|integral to membrane;GO:0050832|defense response to fungus;GO:0009866|induced systemic resistance, ethylene mediated signaling pathway;GO:0009751|response to salicylic acid stimulus;GO:0009620|response to fungus | Ro07_G33342,Ro06_G18836 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA800:Ro01_G30487,Ro01_G21586;TA1366:Ro04_G37144,Ro04_G37145 | - | - | - | Ro04_G37029,Ro04_G37080,Ro04_G37113,Ro04_G37114 | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA80:Ro03_G32826,Ro03_G32827,Ro03_G25001,Ro03_G32871,Ro03_G32872,Ro03_G32870;TA1717:Ro06_G28365,Ro06_G28366 | AT1G53430||AT3G14840||AT1G07650 | leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0005524|ATP binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity | - | 8 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA563:Ro06_G28888,Ro06_G28884,Ro06_G28885;TA1730:Ro06_G28481,Ro06_G28486;TA1752:Ro06_G28901,Ro06_G28899 | AT1G11620||AT4G18940||AT4G18930 | cyclic phosphodiesterase, putative||F-box family protein||cyclic phosphodiesterase | GO:0003674|molecular_function;GO:0003824|catalytic activity;GO:0005622|intracellular;GO:0008150|biological_process;GO:0006388|tRNA splicing, via endonucleolytic cleavage and ligation;GO:0016070|RNA metabolic process;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0004112|cyclic-nucleotide phosphodiesterase activity | Ro06_G22431 | 8 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA956:Ro02_G35585,Ro02_G24103;TA1538:Ro05_G31618,Ro05_G31626;TA1304:Ro04_G36356,Ro04_G36357 | AT2G22540||AT4G24540 | AGL24; AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor||SVP, AGL22; SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding | GO:0042803|protein homodimerization activity;GO:0043565|sequence-specific DNA binding;GO:0005515|protein binding;GO:0016481|negative regulation of transcription;GO:0003700|transcription factor activity;GO:0009266|response to temperature stimulus;GO:0000900|translation repressor activity, nucleic acid binding;GO:0048510|regulation of timing of transition from vegetative to reproductive phase;GO:0005634|nucleus;GO:0048438|floral whorl development;GO:0010582|floral meristem determinacy;GO:0009910|negative regulation of flower development;GO:0046982|protein heterodimerization activity;GO:0010076|maintenance of floral meristem identity | Ro04_G36209,Ro01_G18500 | 8 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G19800||AT4G26260||AT1G14520 | MIOX1; MIOX1 (MYO-INISITOL OXYGENASE); inositol oxygenase/ oxidoreductase||MIOX2; MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase||MIOX4; MIOX4; inositol oxygenase | GO:0005737|cytoplasm;GO:0019853|L-ascorbic acid biosynthetic process;GO:0006949|syncytium formation;GO:0050113|inositol oxygenase activity | Ro01_G00846,Ro05_G14832,Ro05_G07267,Ro04_G12548,Ro06_G15346,Ro07_G27789,Ro07_G27366 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G67270 | ATEB1C, EB1C, ATEB1H1; ATEB1C (microtubule end binding protein 1); microtubule binding | GO:0008017|microtubule binding;GO:0009524|phragmoplast;GO:0005819|spindle;GO:0005730|nucleolus;GO:0030865|cortical cytoskeleton organization;GO:0005634|nucleus;GO:0009652|thigmotropism;GO:0005618|cell wall | Ro01_G04157,Ro04_G36620,Ro02_G04919,Ro05_G24590,Ro03_G32627,Ro07_G33698,Ro04_G37269 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G04175,Ro07_G04359,Ro01_G29657,Ro01_G29693,Ro07_G12667,Ro04_G17683,Ro04_G13299 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G26751||AT5G14640||AT4G18710||AT2G30980||AT4G00720||AT1G09840 | ATSK32; ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase||ATSK41; ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase||BIN2, DWF12, UCU1, ATSK21, SK21; BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase||ATSK11, SK 11; ATSK11; protein kinase/ protein serine/threonine kinase||ATSK13, SK13; SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinase||ASKdZeta, ATSK23, BIL1, ATSK2-2; ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0046827|positive regulation of protein export from nucleus;GO:0005524|ATP binding;GO:0016310|phosphorylation;GO:0009729|detection of brassinosteroid stimulus;GO:0032880|regulation of protein localization;GO:0009741|response to brassinosteroid stimulus;GO:0005829|cytosol;GO:0004674|protein serine/threonine kinase activity;GO:0009733|response to auxin stimulus;GO:0005634|nucleus;GO:0006972|hyperosmotic response;GO:0016301|kinase activity;GO:0004696|glycogen synthase kinase 3 activity;GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0009933|meristem structural organization;GO:0004672|protein kinase activity;GO:0009742|brassinosteroid mediated signaling pathway;GO:0006468|protein amino acid phosphorylation;GO:0009825|multidimensional cell growth;GO:0005575|cellular_component;GO:0009965|leaf morphogenesis | Ro01_G15740,Ro06_G09803,Ro03_G05270,Ro06_G12794,Ro07_G24011,Ro06_G28576,Ro06_G08352 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30185,Ro02_G35140,Ro01_G30187,Ro05_G22882,Ro02_G35465,Ro06_G28604,Ro03_G04951 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30375,Ro04_G36386,Ro04_G00715,Ro06_G25852,Ro04_G27413,Ro07_G34134,Ro04_G36449 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G12250||AT5G23860||AT5G62690||AT1G75780 | TUB2; TUB2; GTP binding / GTPase/ structural molecule||TUB8; TUB8; structural constituent of cytoskeleton||TUB6; TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton||TUB1; TUB1; GTP binding / GTPase/ structural molecule | GO:0010583|response to cyclopentenone;GO:0007017|microtubule-based process;GO:0003924|GTPase activity;GO:0046686|response to cadmium ion;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0015630|microtubule cytoskeleton;GO:0005200|structural constituent of cytoskeleton;GO:0005730|nucleolus;GO:0009651|response to salt stress;GO:0005198|structural molecule activity;GO:0009409|response to cold;GO:0045298|tubulin complex;GO:0005525|GTP binding;GO:0005773|vacuole;GO:0005618|cell wall | Ro02_G02238,Ro07_G09429,Ro03_G17159,Ro06_G09846,Ro05_G17896,Ro03_G19178,Ro05_G03604 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G61560||AT3G26340 | MLO6, ATMLO6; MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding||20S proteasome beta subunit E, putative | GO:0005839|proteasome core complex;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0006952|defense response;GO:0009817|defense response to fungus, incompatible interaction;GO:0008219|cell death | Ro02_G19605,Ro07_G33738,Ro02_G35253,Ro07_G34223,Ro03_G24718,Ro04_G36805,Ro02_G35596 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G21278,Ro02_G35301,Ro05_G31470,Ro03_G22742,Ro03_G32406,Ro04_G36282,Ro06_G28712 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G07070||AT3G20530||AT5G02800||AT1G07870||AT5G18610||AT5G13160 | PBS1; PBS1 (avrPphB susceptible 1); kinase/ protein serine/threonine kinase||protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0005792|microsome;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0046777|protein amino acid autophosphorylation;GO:0006952|defense response;GO:0006468|protein amino acid phosphorylation;GO:0009816|defense response to bacterium, incompatible interaction;GO:0005524|ATP binding;GO:0006499|N-terminal protein myristoylation | Ro02_G22844,Ro03_G26799,Ro06_G29024,Ro03_G02120,Ro04_G36431,Ro07_G12010,Ro04_G36307 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G34911,Ro06_G29226,Ro02_G34917,Ro04_G36340,Ro03_G27851,Ro04_G36330,Ro02_G36023 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G43170 | ARP1, emb2207, RPL3A; ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome | GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005618|cell wall;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0006412|translation;GO:0005840|ribosome;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane;GO:0009793|embryonic development ending in seed dormancy;GO:0005773|vacuole | Ro02_G35120,Ro06_G26808,Ro07_G22000,Ro07_G34070,Ro07_G34145,Ro04_G36584,Ro02_G35545 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35312,Ro07_G34786,Ro03_G33203,Ro03_G25978,Ro05_G31249,Ro03_G32008,Ro06_G29338 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | ATMG00860 | ORF158; hypothetical protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro02_G35453,Ro04_G37260,Ro03_G32230,Ro03_G32287,Ro04_G37064,Ro06_G29310,Ro06_G29449 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35793,Ro05_G30705,Ro07_G33579,Ro06_G22970,Ro07_G33623,Ro06_G29439,Ro07_G26547 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G79940||AT5G08305 | ||ATERDJ2A; ATERDJ2A; heat shock protein binding / unfolded protein binding | ;GO:0005886|plasma membrane;GO:0051082|unfolded protein binding;GO:0031072|heat shock protein binding | Ro02_G36082,Ro03_G32015,Ro03_G33014,Ro06_G29044,Ro07_G34698,Ro03_G11120,Ro05_G31282 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G32014,Ro04_G36310,Ro06_G28671,Ro05_G30997,Ro06_G28291,Ro07_G21420,Ro07_G33683 | 7 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA101:Ro07_G34556,Ro07_G34554,Ro07_G34557,Ro07_G34555,Ro07_G34561,Ro07_G34562 | AT5G05880||AT3G55700||AT3G11340 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0016757|transferase activity, transferring glycosyl groups;GO:0012505|endomembrane system;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | Ro05_G30704 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA117:Ro02_G35240,Ro02_G35247,Ro02_G35246,Ro02_G35245,Ro02_G15124 | AT1G76490 | HMG1, HMGR1; HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase | GO:0008299|isoprenoid biosynthetic process;GO:0042282|hydroxymethylglutaryl-CoA reductase activity;GO:0016126|sterol biosynthetic process;GO:0005783|endoplasmic reticulum;GO:0016020|membrane | Ro01_G29611,Ro05_G31102 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA119:Ro03_G05816,Ro03_G05817,Ro03_G32957,Ro03_G32959,Ro03_G05818 | AT1G30910||AT2G34930 | molybdenum cofactor sulfurase family protein||disease resistance family protein | GO:0009507|chloroplast;GO:0007165|signal transduction;GO:0003824|catalytic activity;GO:0030151|molybdenum ion binding;GO:0005515|protein binding;GO:0050832|defense response to fungus;GO:0008150|biological_process;GO:0006952|defense response;GO:0030170|pyridoxal phosphate binding;GO:0008265|Mo-molybdopterin cofactor sulfurase activity;GO:0005618|cell wall | Ro03_G32968,Ro03_G32962 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA124:Ro03_G32365,Ro03_G32366,Ro03_G06069,Ro03_G06065,Ro03_G06060 | AT2G36380||AT1G66950 | PDR11, ATPDR11; PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances||PDR6, ATPDR6; PDR6; ATPase, coupled to transmembrane movement of substances | GO:0006810|transport;GO:0016020|membrane | Ro02_G27197,Ro06_G11860 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1327:Ro04_G36690,Ro04_G36689 | AT2G22440||AT1G43760 | BEST Arabidopsis thaliana protein match is: reverse transcriptase, putative / RNA-dependent DNA polymerase, putative (TAIR:AT4G29090.1); Has 149 Blast hits to 133 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40390.1); Has 2614 Blast hits to 2551 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G30424,Ro02_G35564,Ro03_G32030,Ro04_G36538,Ro07_G34602 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA145:Ro06_G09910,Ro06_G09914,Ro06_G28976,Ro06_G28975,Ro06_G28974 | AT3G55550||AT3G53810||AT2G37710 | RLK; RLK (receptor lectin kinase); kinase||lectin protein kinase, putative | GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity;GO:0009751|response to salicylic acid stimulus | Ro01_G11721,Ro03_G32447 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA151:Ro06_G29065,Ro06_G29081,Ro06_G29080,Ro06_G29078,Ro06_G29079 | AT2G36800||AT2G36760||AT2G36780||AT3G53150||AT3G58610 | DOGT1, UGT73C5; DOGT1 (DON-GLUCOSYLTRANSFERASE 1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucosyltransferase/ quercetin 4'-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transf||UDP-glucoronosyl/UDP-glucosyl transferase family protein||ketol-acid reductoisomerase||UGT73C2; UGT73C2 (UDP-glucosyl transferase 73C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups||UGT73D1; UGT73D1 (UDP-glucosyl transferase 73D1); UDP-glycosyltransferase/ transferase, transferring hexosyl groups | GO:0050403|trans-zeatin O-beta-D-glucosyltransferase activity;GO:0012505|endomembrane system;GO:0009941|chloroplast envelope;GO:0016131|brassinosteroid metabolic process;GO:0050502|cis-zeatin O-beta-D-glucosyltransferase activity;GO:0008194|UDP-glycosyltransferase activity;GO:0005739|mitochondrion;GO:0005507|copper ion binding;GO:0009507|chloroplast;GO:0004455|ketol-acid reductoisomerase activity;GO:0046686|response to cadmium ion;GO:0016757|transferase activity, transferring glycosyl groups;GO:0009082|branched chain family amino acid biosynthetic process;GO:0046527|glucosyltransferase activity;GO:0048046|apoplast;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0009570|chloroplast stroma;GO:0005575|cellular_component;GO:0005618|cell wall | Ro04_G37176,Ro06_G19401 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA178:Ro01_G30278,Ro01_G30291,Ro01_G30292,Ro01_G30289 | AT4G37370||AT4G37400||AT1G66540 | CYP81D8; CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||cytochrome P450, putative||CYP81F3; CYP81F3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0005886|plasma membrane;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro01_G30279,Ro06_G28278,Ro05_G31292 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA238:Ro05_G30797,Ro05_G18417,Ro05_G30809,Ro05_G30808 | AT3G12580 | HSP70; HSP70 (heat shock protein 70); ATP binding | GO:0006457|protein folding;GO:0009644|response to high light intensity;GO:0046686|response to cadmium ion;GO:0009615|response to virus;GO:0005886|plasma membrane;GO:0042542|response to hydrogen peroxide;GO:0009408|response to heat;GO:0009617|response to bacterium;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0005829|cytosol;GO:0005618|cell wall | Ro07_G33627,Ro05_G30846,Ro05_G30817 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA243:Ro06_G08200,Ro06_G28801,Ro06_G28800,Ro06_G08199 | AT4G14880||AT3G04940||AT5G28020||AT2G43750 | OASB, ACS1, CPACS1, ATCS-B; OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase||ATCYSD1, CYSD1; CYSD1 (CYSTEINE SYNTHASE D1); cysteine synthase||CYSD2, ATCYSD2; CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding||OASA1, CYTACS1; OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); cysteine synthase | GO:0009507|chloroplast;GO:0005739|mitochondrion;GO:0016020|membrane;GO:0004124|cysteine synthase activity;GO:0006535|cysteine biosynthetic process from serine;GO:0046686|response to cadmium ion;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0009570|chloroplast stroma;GO:0009536|plastid;GO:0019344|cysteine biosynthetic process;GO:0005634|nucleus;GO:0008152|metabolic process;GO:0009941|chloroplast envelope;GO:0005777|peroxisome;GO:0005829|cytosol | Ro04_G36479,Ro04_G37252,Ro01_G30083 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA270:Ro07_G21290,Ro07_G33630,Ro07_G33629,Ro07_G33628 | AT3G22320||AT4G36220||AT5G57260 | ATRPABC24.3, RPB5A, NRPB5, NRPD5; NRPB5; DNA binding / DNA-directed RNA polymerase||FAH1, CYP84A1; FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase||CYP71B10; CYP71B10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005665|DNA-directed RNA polymerase II, core complex;GO:0005506|iron ion binding;GO:0003677|DNA binding;GO:0000418|DNA-directed RNA polymerase IV complex;GO:0003899|DNA-directed RNA polymerase activity;GO:0005783|endoplasmic reticulum;GO:0009809|lignin biosynthetic process;GO:0009699|phenylpropanoid biosynthetic process;GO:0019825|oxygen binding;GO:0006350|transcription;GO:0010224|response to UV-B;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0046424|ferulate 5-hydroxylase activity;GO:0020037|heme binding | Ro03_G32401,Ro07_G26286,Ro01_G29884 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA356:Ro02_G35678,Ro02_G26474,Ro02_G35681 | - | - | - | Ro01_G29757,Ro01_G29758,Ro02_G21499,Ro05_G31225 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA373:Ro03_G10252,Ro03_G33174,Ro03_G33177 | AT1G75950||AT5G42190 | SKP1, ASK1, ATSKP1, SKP1A, UIP1; SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase||ASK2, SKP1B; ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligase | GO:0009524|phragmoplast;GO:0005819|spindle;GO:0007140|male meiosis;GO:0046686|response to cadmium ion;GO:0007067|mitosis;GO:0000151|ubiquitin ligase complex;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0005634|nucleus;GO:0004842|ubiquitin-protein ligase activity;GO:0019005|SCF ubiquitin ligase complex;GO:0005737|cytoplasm;GO:0009793|embryonic development ending in seed dormancy;GO:0045910|negative regulation of DNA recombination | Ro02_G35154,Ro02_G36065,Ro02_G36086,Ro05_G23993 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA398:Ro03_G26072,Ro03_G25547,Ro03_G32491 | AT5G02100||AT5G59420||AT3G09300 | UNE18, ORP3A; UNE18 (UNFERTILIZED EMBRYO SAC 18); oxysterol binding / sterol binding||ORP3C; ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C); oxysterol binding||ORP3B; ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B); oxysterol binding | GO:0009567|double fertilization forming a zygote and endosperm;GO:0008202|steroid metabolic process;GO:0008142|oxysterol binding;GO:0032934|sterol binding;GO:0005783|endoplasmic reticulum;GO:0005575|cellular_component | Ro03_G12852,Ro04_G19827,Ro06_G06111,Ro04_G37041 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA39:Ro02_G14979,Ro02_G35927,Ro02_G14975,Ro02_G23263,Ro02_G23261,Ro02_G35938,Ro02_G35940 | AT1G47480||AT1G49660||AT2G03550||AT3G48690 | hydrolase||AtCXE5; AtCXE5 (Arabidopsis thaliana carboxyesterase 5); carboxylesterase||ATCXE12, CXE12; CXE12; carboxylesterase | GO:0004091|carboxylesterase activity;GO:0008152|metabolic process;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0016787|hydrolase activity | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA407:Ro03_G31948,Ro03_G31946,Ro03_G31947 | AT5G48930 | HCT; HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase | GO:0016740|transferase activity;GO:0047205|quinate O-hydroxycinnamoyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0047172|shikimate O-hydroxycinnamoyltransferase activity;GO:0005575|cellular_component;GO:0010252|auxin homeostasis;GO:0009963|positive regulation of flavonoid biosynthetic process | Ro03_G32257,Ro06_G28423,Ro05_G31323,Ro05_G31326 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA41:Ro03_G17178,Ro03_G17177,Ro03_G33108,Ro03_G17173,Ro03_G17167,Ro03_G17166,Ro03_G17165 | AT4G20800||AT1G34575||AT1G30700||AT4G20840||AT4G20860||AT1G30760 | FAD-binding domain-containing protein | GO:0050660|FAD binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0009055|electron carrier activity | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA42:Ro03_G21189,Ro03_G21190,Ro03_G21192,Ro03_G27108,Ro03_G10084,Ro03_G10081,Ro03_G10079 | AT5G10530||AT5G65600 | lectin protein kinase, putative||legume lectin family protein / protein kinase family protein | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA43:Ro03_G23306,Ro03_G20047,Ro03_G20049,Ro03_G32520,Ro03_G20054,Ro03_G20059,Ro03_G20062 | AT3G18670||AT5G35810 | ankyrin repeat family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G54070.1); Has 446 Blast hits to 440 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0005515|protein binding;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0008150|biological_process | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA44:Ro03_G23601,Ro03_G23597,Ro03_G32528,Ro03_G32488,Ro03_G25243,Ro03_G23596,Ro03_G32507 | AT3G48670||AT3G12550||AT1G15910 | XH/XS domain-containing protein / XS zinc finger domain-containing protein | GO:0003674|molecular_function;GO:0046686|response to cadmium ion;GO:0008150|biological_process;GO:0006342|chromatin silencing;GO:0006306|DNA methylation;GO:0005575|cellular_component | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA45:Ro03_G31842,Ro03_G31843,Ro03_G31840,Ro03_G31841,Ro03_G31847,Ro03_G31848,Ro03_G31849 | AT5G24910||AT5G24900 | CYP714A2; CYP714A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP714A1; CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA50:Ro04_G12629,Ro04_G36974,Ro04_G12628,Ro04_G22379,Ro04_G22380,Ro04_G36942,Ro04_G36941 | AT5G07610||AT5G62660||AT2G16810 | F-box family protein (FBX8)||F-box family protein | GO:0003674|molecular_function;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0008150|biological_process;GO:0004842|ubiquitin-protein ligase activity;GO:0005575|cellular_component | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA51:Ro04_G21157,Ro04_G36467,Ro04_G36468,Ro04_G05444,Ro04_G36489,Ro04_G36490,Ro04_G05441 | AT1G19715||AT1G73040 | jacalin lectin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA52:Ro04_G21558,Ro04_G21557,Ro04_G21554,Ro04_G36852,Ro04_G36855,Ro04_G36850,Ro04_G36851 | AT3G01680 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA53:Ro04_G36989,Ro04_G36988,Ro04_G36986,Ro04_G05993,Ro04_G05994,Ro04_G37007,Ro04_G37006 | - | - | - | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA54:Ro04_G37218,Ro04_G37217,Ro04_G26127,Ro04_G26129,Ro04_G37227,Ro04_G26135,Ro04_G11413 | AT1G29720||AT3G47090||AT5G39390||AT3G47580||AT3G47570 | protein kinase family protein||leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009507|chloroplast;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA59:Ro05_G31541,Ro05_G31529,Ro05_G31528,Ro05_G31534,Ro05_G31530,Ro05_G31531,Ro05_G19990 | - | - | - | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA60:Ro06_G08163,Ro06_G28815,Ro06_G28816,Ro06_G08158,Ro06_G28814,Ro06_G28820,Ro06_G28819 | AT3G22440||AT5G27230||AT5G48385||AT5G27220 | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).||hydroxyproline-rich glycoprotein family protein||protein transport protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA63:Ro06_G28987,Ro06_G28985,Ro06_G28984,Ro06_G28986,Ro06_G28988,Ro06_G28990,Ro06_G28989 | AT3G21420||AT1G05010 | oxidoreductase, 2OG-Fe(II) oxygenase family protein||EFE, ACO4, EAT1; EFE (ETHYLENE-FORMING ENZYME); 1-aminocyclopropane-1-carboxylate oxidase | GO:0009815|1-aminocyclopropane-1-carboxylate oxidase activity;GO:0016491|oxidoreductase activity;GO:0008152|metabolic process;GO:0005575|cellular_component;GO:0009693|ethylene biosynthetic process;GO:0009620|response to fungus | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA64:Ro07_G12001,Ro07_G34488,Ro07_G34491,Ro07_G34490,Ro07_G34492,Ro07_G34499,Ro07_G34498 | AT5G53130||AT2G46440||AT4G30560||AT1G21240||AT3G25490 | ATCNGC9, CNGC9; ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel||CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||wall-associated kinase, putative||ATCNGC11, CNGC11; ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel||WAK3; WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase | GO:0005216|ion channel activity;GO:0004674|protein serine/threonine kinase activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0006468|protein amino acid phosphorylation;GO:0005242|inward rectifier potassium channel activity;GO:0016301|kinase activity;GO:0016020|membrane;GO:0009620|response to fungus | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA65:Ro07_G12002,Ro07_G34487,Ro07_G34495,Ro07_G34489,Ro07_G34497,Ro07_G11996,Ro07_G34493 | AT3G55070||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0008150|biological_process;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA67:Ro07_G34402,Ro07_G34403,Ro07_G26565,Ro07_G34404,Ro07_G26566,Ro07_G22098,Ro07_G22099 | AT3G60910 | catalytic/ methyltransferase | GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0003824|catalytic activity;GO:0008168|methyltransferase activity | - | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA72:Ro02_G12614,Ro02_G12616,Ro02_G27328,Ro02_G27047,Ro02_G35470,Ro02_G21447 | AT5G48100||AT5G09360 | LAC14; LAC14 (laccase 14); laccase||TT10, LAC15, ATLAC15; TT10 (TRANSPARENT TESTA 10); copper ion binding / laccase | GO:0046274|lignin catabolic process;GO:0009813|flavonoid biosynthetic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity;GO:0046688|response to copper ion;GO:0009809|lignin biosynthetic process;GO:0005507|copper ion binding | Ro01_G12265 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA77:Ro03_G15797,Ro03_G15798,Ro03_G15799,Ro03_G15802,Ro03_G15803,Ro03_G15805 | AT1G30700||AT1G26390||AT1G26420||AT4G20800 | FAD-binding domain-containing protein | GO:0050660|FAD binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0012505|endomembrane system;GO:0009055|electron carrier activity | Ro03_G06281 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA86:Ro05_G23279,Ro05_G23276,Ro05_G30970,Ro05_G23272,Ro05_G30969,Ro05_G23271 | AT3G07040||AT1G59620 | RPM1, RPS3; RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); nucleotide binding / protein binding||CW9; CW9; ATP binding | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0009626|plant-type hypersensitive response;GO:0005575|cellular_component;GO:0006952|defense response;GO:0005524|ATP binding;GO:0000166|nucleotide binding | Ro05_G13849 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA92:Ro06_G20165,Ro06_G28669,Ro06_G27286,Ro06_G28670,Ro06_G28668,Ro06_G23501 | AT3G02100 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | Ro01_G23506 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA96:Ro07_G33366,Ro07_G33369,Ro07_G33373,Ro07_G33368,Ro07_G33370,Ro07_G33367 | AT5G36110||AT5G36140 | CYP716A2; CYP716A2; electron carrier/ heme binding / iron ion binding / monooxygenase||CYP716A1; CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro04_G36786 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA97:Ro07_G33377,Ro07_G33380,Ro07_G33379,Ro07_G33376,Ro07_G33387,Ro07_G33384 | AT4G13810||AT5G27060||AT2G34930||AT2G32660 | AtRLP53; AtRLP53 (Receptor Like Protein 53); kinase/ protein binding||AtRLP47; AtRLP47 (Receptor Like Protein 47); protein binding||AtRLP22; AtRLP22 (Receptor Like Protein 22); kinase/ protein binding||disease resistance family protein | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0005618|cell wall | Ro07_G33414 | 7 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA139:Ro05_G30828,Ro05_G30834,Ro05_G30833,Ro05_G30827,Ro05_G30831;TA1499:Ro05_G30782,Ro05_G30780 | AT1G12100||AT4G12510||AT1G12090||AT1G62510||AT2G45180 | ELP; ELP (EXTENSIN-LIKE PROTEIN); lipid binding||lipid binding||protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | GO:0008289|lipid binding;GO:0012505|endomembrane system;GO:0009535|chloroplast thylakoid membrane;GO:0006869|lipid transport | - | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA167:Ro01_G11625,Ro01_G11626,Ro01_G29929,Ro01_G29939;TA315:Ro01_G30272,Ro01_G30273,Ro01_G30274 | AT5G24080||AT5G60900 | RLK1; RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding||protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA230:Ro04_G36861,Ro04_G36862,Ro04_G36860,Ro04_G36858;TA470:Ro04_G36859,Ro04_G36863,Ro04_G36864 | AT4G23990||AT4G24000||AT1G55850 | ATCSLE1, CSLE1; ATCSLE1; cellulose synthase/ transferase, transferring glycosyl groups||ATCSLG3, CSLG3; ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups||ATCSLG2, CSLG2; ATCSLG2; cellulose synthase/ transferase/ transferase, transferring glycosyl groups | GO:0016740|transferase activity;GO:0016020|membrane;GO:0016757|transferase activity, transferring glycosyl groups;GO:0009832|plant-type cell wall biogenesis;GO:0000271|polysaccharide biosynthetic process;GO:0005886|plasma membrane;GO:0016759|cellulose synthase activity;GO:0005783|endoplasmic reticulum;GO:0030244|cellulose biosynthetic process | - | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA249:Ro06_G19535,Ro06_G19533,Ro06_G19527,Ro06_G26686;TA511:Ro05_G31635,Ro05_G18744,Ro05_G31637 | AT5G45530||AT5G45540 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA282:Ro07_G33723,Ro07_G33729,Ro07_G33727,Ro07_G33732;TA1507:Ro05_G30947,Ro05_G30942 | AT4G27190||AT4G19050||AT4G27220||AT5G47260 | disease resistance protein (NBS-LRR class), putative||ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding||ATP binding / protein binding | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005525|GTP binding;GO:0005575|cellular_component;GO:0006952|defense response;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0006499|N-terminal protein myristoylation | Ro05_G31600 | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA514:Ro06_G03838,Ro06_G03835,Ro06_G03832;TA1695:Ro06_G26483,Ro06_G23901 | AT3G60130||AT5G44640||AT2G44480 | BGLU17; BGLU17 (BETA GLUCOSIDASE 17); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds||BGLU13; BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds||BGLU16; BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | Ro03_G06303,Ro05_G24951 | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA790:Ro01_G30448,Ro01_G27729;TA1128:Ro03_G31881,Ro03_G31888 | - | - | - | Ro07_G34129,Ro02_G35267,Ro03_G31879 | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA829:Ro02_G04920,Ro02_G35567;TA1387:Ro05_G07238,Ro05_G07239 | AT4G10490||AT2G44800 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | GO:0016491|oxidoreductase activity;GO:0019748|secondary metabolic process;GO:0008150|biological_process;GO:0016706|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0005575|cellular_component | Ro02_G16266,Ro04_G15566,Ro04_G15567 | 7 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1032:Ro03_G10625,Ro03_G10629;TA1563:Ro06_G05694,Ro06_G05691;TA1895:Ro07_G26118,Ro07_G26950 | AT2G30360||AT5G58380||AT5G01820||AT5G07070||AT5G25110 | CIPK11, PKS5, SIP4, SNRK3.22; SIP4 (SOS3-INTERACTING PROTEIN 4); kinase/ protein kinase||ATSR1, SnRK3.15, CIPK14, ATCIPK14; ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CIPK10, PKS2, SIP1, SNRK3.8; SIP1 (SOS3-INTERACTING PROTEIN 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CIPK25, SnRK3.25; CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CIPK2, SnRK3.2; CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0009268|response to pH;GO:0016301|kinase activity;GO:0050832|defense response to fungus;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0005773|vacuole | Ro03_G10082 | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA1068:Ro03_G16393,Ro03_G07502;TA1380:Ro05_G03361,Ro05_G03362;TA1560:Ro06_G04899,Ro06_G28659 | AT5G60920||AT5G15630 | COBL4, IRX6; IRX6||COB; COB (COBRA) | GO:0003674|molecular_function;GO:0031225|anchored to membrane;GO:0009930|longitudinal side of cell surface;GO:0009834|secondary cell wall biogenesis;GO:0046658|anchored to plasma membrane;GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0009897|external side of plasma membrane;GO:0009825|multidimensional cell growth;GO:0009505|plant-type cell wall;GO:0010215|cellulose microfibril organization | Ro06_G04907 | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA391:Ro03_G20473,Ro03_G20476,Ro03_G12273;TA1977:Ro07_G34422,Ro07_G14926;TA938:Ro02_G35266,Ro02_G35264 | AT1G51410||AT5G19440 | cinnamyl-alcohol dehydrogenase, putative (CAD) | GO:0004022|alcohol dehydrogenase (NAD) activity;GO:0005886|plasma membrane;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0044237|cellular metabolic process | - | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA464:Ro04_G36334,Ro04_G36379,Ro04_G36378;TA775:Ro01_G30181,Ro01_G30199;TA1301:Ro04_G36338,Ro04_G36337 | AT1G02520 | PGP11; PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0006810|transport | - | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA502:Ro05_G31107,Ro05_G31108,Ro05_G31109;TA1902:Ro07_G33240,Ro07_G33239;TA1122:Ro03_G31777,Ro03_G31776 | AT3G45140 | LOX2, ATLOX2; LOX2 (LIPOXYGENASE 2); lipoxygenase | GO:0009507|chloroplast;GO:0016165|lipoxygenase activity;GO:0009414|response to water deprivation;GO:0009941|chloroplast envelope;GO:0009570|chloroplast stroma;GO:0051707|response to other organism;GO:0009695|jasmonic acid biosynthetic process;GO:0009753|response to jasmonic acid stimulus;GO:0009535|chloroplast thylakoid membrane;GO:0009611|response to wounding;GO:0009620|response to fungus | - | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA720:Ro01_G27627,Ro01_G30458;TA950:Ro02_G35518,Ro02_G35527;TA1147:Ro03_G32289,Ro03_G32290 | - | - | - | Ro06_G29447 | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA834:Ro02_G06636,Ro02_G35190;TA1467:Ro05_G25691,Ro05_G31042;TA1879:Ro07_G24105,Ro07_G34752 | AT2G44890||AT2G45510 | CYP704A2; CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP704A1; CYP704A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro01_G30122 | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| TA967:Ro02_G35813,Ro02_G23376;TA1726:Ro06_G28441,Ro06_G28442;TA1309:Ro04_G36423,Ro04_G36424 | AT1G66920||AT5G38260||AT1G70250||AT5G38280 | serine/threonine protein kinase, putative||receptor serine/threonine kinase, putative||PR5K; PR5K; kinase/ transmembrane receptor protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0009620|response to fungus | Ro01_G30006 | 7 | 3 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G20540||AT1G54180 | ATBRXL4, BRX-LIKE4; ATBRXL4 (BREVIS RADIX-LIKE 4)||ATBRXL3, BRX-LIKE3; BRX-LIKE3 (BREVIS RADIX-LIKE 3) | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G02959,Ro06_G21883,Ro01_G13118,Ro06_G26554,Ro01_G26054,Ro05_G19136 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G20498,Ro04_G26213,Ro07_G34767,Ro05_G30982,Ro07_G15998,Ro06_G28190 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G09810||AT3G12110||AT2G37620 | ACT1, AAc1; ACT1 (ACTIN 1); structural constituent of cytoskeleton||ACT2, ACT7; ACT7 (ACTIN 7); structural constituent of cytoskeleton||ACT11; ACT11 (actin-11); structural constituent of cytoskeleton | GO:0048364|root development;GO:0005856|cytoskeleton;GO:0009845|seed germination;GO:0048767|root hair elongation;GO:0009611|response to wounding;GO:0030036|actin cytoskeleton organization;GO:0005739|mitochondrion;GO:0007010|cytoskeleton organization;GO:0010583|response to cyclopentenone;GO:0009733|response to auxin stimulus;GO:0005200|structural constituent of cytoskeleton;GO:0010053|root epidermal cell differentiation;GO:0009416|response to light stimulus;GO:0048589|developmental growth;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005515|protein binding;GO:0051301|cell division;GO:0005618|cell wall | Ro01_G21304,Ro06_G13067,Ro03_G31976,Ro07_G25150,Ro05_G30589,Ro06_G06129 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G24307,Ro04_G18945,Ro03_G32029,Ro01_G26105,Ro06_G19067,Ro04_G17565 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G57890||AT1G24909||AT1G78570||AT1G63000 | anthranilate synthase beta subunit, putative||NRS/ER, UER1; NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase||RHM1, ROL1, ATRHM1; RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic | GO:0050377|UDP-glucose 4,6-dehydratase activity;GO:0010489|UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity;GO:0000162|tryptophan biosynthetic process;GO:0006541|glutamine metabolic process;GO:0010280|UDP-L-rhamnose synthase activity;GO:0009058|biosynthetic process;GO:0009617|response to bacterium;GO:0019305|dTDP-rhamnose biosynthetic process;GO:0010490|UDP-4-keto-rhamnose-4-keto-reductase activity;GO:0004049|anthranilate synthase activity;GO:0010315|auxin efflux;GO:0008830|dTDP-4-dehydrorhamnose 3,5-epimerase activity;GO:0003824|catalytic activity;GO:0008152|metabolic process;GO:0051555|flavonol biosynthetic process;GO:0009225|nucleotide-sugar metabolic process;GO:0005886|plasma membrane;GO:0010253|UDP-rhamnose biosynthetic process;GO:0008831|dTDP-4-dehydrorhamnose reductase activity;GO:0005625|soluble fraction | Ro01_G25581,Ro04_G00223,Ro06_G09932,Ro02_G00775,Ro03_G18603,Ro05_G14868 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29750,Ro02_G10765,Ro03_G31924,Ro03_G10764,Ro03_G32758,Ro03_G32761 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G07930 | MCT2; MCT2 (mei2 C-Terminal RRM only like 2); nucleic acid binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | Ro01_G29910,Ro02_G35031,Ro06_G28264,Ro02_G35823,Ro05_G30830,Ro04_G36695 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G14790 | RDR1, ATRDRP1; RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding | GO:0003968|RNA-directed RNA polymerase activity;GO:0009615|response to virus;GO:0003676|nucleic acid binding;GO:0016441|posttranscriptional gene silencing;GO:0009751|response to salicylic acid stimulus;GO:0060148|positive regulation of posttranscriptional gene silencing | Ro01_G29960,Ro04_G36148,Ro01_G29961,Ro04_G36603,Ro05_G31556,Ro04_G37223 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G57560 | aspartate/glutamate/uridylate kinase family protein | GO:0003991|acetylglutamate kinase activity;GO:0009507|chloroplast;GO:0042450|arginine biosynthetic process via ornithine;GO:0006526|arginine biosynthetic process | Ro01_G30177,Ro03_G32436,Ro02_G05717,Ro02_G35506,Ro04_G36556,Ro06_G21437 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30202,Ro04_G37287,Ro01_G30351,Ro04_G36750,Ro06_G28314,Ro06_G28149 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30290,Ro07_G34319,Ro04_G36510,Ro06_G28715,Ro07_G34037,Ro05_G31355 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30423,Ro07_G33358,Ro07_G33536,Ro03_G31787,Ro06_G24063,Ro03_G32000 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G48900||AT4G13710||AT3G07010||AT1G67750||AT4G24780 | pectate lyase family protein | GO:0030570|pectate lyase activity;GO:0016829|lyase activity;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0016020|membrane | Ro02_G06610,Ro04_G25619,Ro03_G13512,Ro04_G22247,Ro05_G18669,Ro06_G03888 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G09570||AT1G35670||AT4G35310||AT5G04870||AT2G38910 | CPK4, ATCPK4; CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinase||CPK5, ATCPK5; CPK5 (calmodulin-domain protein kinase 5); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase||CPK20; CPK20; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase||CPK1, ATCPK1; CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase||ATCDPK2, CPK11, ATCPK11; ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase | GO:0004674|protein serine/threonine kinase activity;GO:0004683|calmodulin-dependent protein kinase activity;GO:0005524|ATP binding;GO:0005777|peroxisome;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0009789|positive regulation of abscisic acid mediated signaling pathway;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005509|calcium ion binding;GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0016020|membrane;GO:0005829|cytosol;GO:0006499|N-terminal protein myristoylation | Ro02_G21765,Ro06_G21344,Ro02_G35254,Ro07_G23754,Ro06_G07514,Ro06_G07539 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G64520 | RPN12a; RPN12a (Regulatory Particle non-ATPase 12a); peptidase | GO:0006511|ubiquitin-dependent protein catabolic process;GO:0048366|leaf development;GO:0009941|chloroplast envelope;GO:0043161|proteasomal ubiquitin-dependent protein catabolic process;GO:0009647|skotomorphogenesis;GO:0008541|proteasome regulatory particle, lid subcomplex;GO:0030163|protein catabolic process;GO:0009733|response to auxin stimulus;GO:0009908|flower development;GO:0009408|response to heat;GO:0005634|nucleus;GO:0008233|peptidase activity;GO:0043248|proteasome assembly;GO:0009735|response to cytokinin stimulus;GO:0048825|cotyledon development;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0051788|response to misfolded protein;GO:0000502|proteasome complex;GO:0048528|post-embryonic root development | Ro02_G35902,Ro07_G06650,Ro03_G32214,Ro05_G31419,Ro06_G28113,Ro07_G34042 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G46010||AT4G25590||AT1G01750||AT5G59880 | ADF7; ADF7 (actin depolymerizing factor 7); actin binding||ADF1, atadf, ATADF1; ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding||ADF3; ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding||ADF11; ADF11 (ACTIN DEPOLYMERIZING FACTOR 11); actin binding | GO:0009507|chloroplast;GO:0006979|response to oxidative stress;GO:0046686|response to cadmium ion;GO:0007015|actin filament organization;GO:0003779|actin binding;GO:0005886|plasma membrane;GO:0005622|intracellular;GO:0008150|biological_process;GO:0005739|mitochondrion | Ro03_G02025,Ro07_G16082,Ro05_G17879,Ro07_G22798,Ro06_G06156,Ro07_G09430 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G11042,Ro04_G36135,Ro03_G31958,Ro05_G30698,Ro03_G32635,Ro07_G34031 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G62040||AT4G16520||AT2G05630 | ATG8C; ATG8C (autophagy 8c); microtubule binding||ATG8D; autophagy 8d (APG8d)||ATG8F; ATG8F (autophagy 8f); microtubule binding | GO:0008017|microtubule binding;GO:0006914|autophagy | Ro03_G13468,Ro05_G08638,Ro03_G26574,Ro04_G21216,Ro06_G06745,Ro07_G18721 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G47497||AT4G29090 | nucleic acid binding||reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | GO:0003676|nucleic acid binding;GO:0012505|endomembrane system | Ro03_G31982,Ro05_G31455,Ro07_G33710,Ro06_G29134,Ro06_G28165,Ro06_G29189 | 6 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA103:Ro01_G15242,Ro01_G29831,Ro01_G29830,Ro01_G29829,Ro01_G29832 | AT4G37970||AT4G37980||AT4G37990 | ATCAD6, CAD6; CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6); binding / catalytic/ oxidoreductase/ zinc ion binding||ELI3-2, ELI3, ATCAD8, CAD-B2; ELI3-2 (ELICITOR-ACTIVATED GENE 3-2); aryl-alcohol dehydrogenase/ mannitol dehydrogenase||ELI3-1, ELI3, ATCAD7, CAD7; ELI3-1 (ELICITOR-ACTIVATED GENE 3-1); binding / catalytic/ oxidoreductase/ zinc ion binding | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008270|zinc ion binding;GO:0055114|oxidation reduction;GO:0009626|plant-type hypersensitive response;GO:0008152|metabolic process;GO:0009617|response to bacterium;GO:0005575|cellular_component;GO:0018456|aryl-alcohol dehydrogenase activity | Ro07_G04322 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA112:Ro02_G05481,Ro02_G35999,Ro02_G35997,Ro02_G35996,Ro02_G35994 | AT4G15480 | UGT84A1; UGT84A1; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0008194|UDP-glycosyltransferase activity;GO:0010224|response to UV-B;GO:0035251|UDP-glucosyltransferase activity;GO:0005575|cellular_component;GO:0050284|sinapate 1-glucosyltransferase activity | Ro02_G35838 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1149:Ro03_G32294,Ro03_G32297 | - | - | - | Ro07_G34079,Ro07_G17911,Ro06_G14888,Ro06_G29454 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1170:Ro03_G32721,Ro03_G32722 | - | - | - | Ro01_G30318,Ro01_G30376,Ro02_G35617,Ro03_G27562 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA127:Ro03_G32979,Ro03_G32980,Ro03_G32982,Ro03_G32981,Ro03_G08722 | AT3G14690||AT1G60170 | CYP72A15; CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||emb1220; emb1220 (embryo defective 1220) | GO:0003674|molecular_function;GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0009793|embryonic development ending in seed dormancy;GO:0020037|heme binding | Ro01_G04240 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA130:Ro04_G13966,Ro04_G36967,Ro04_G13962,Ro04_G36995,Ro04_G36996 | AT3G21180||AT5G57110||AT4G29900 | ACA8, AT-ACA8; ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association||ACA10, CIF1, ATACA10; ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10); calcium-transporting ATPase/ calmodulin binding||ACA9, ATACA9; ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9); calcium-transporting ATPase/ calmodulin binding | GO:0009624|response to nematode;GO:0043621|protein self-association;GO:0005886|plasma membrane;GO:0009555|pollen development;GO:0005516|calmodulin binding;GO:0005388|calcium-transporting ATPase activity;GO:0007338|single fertilization;GO:0048367|shoot development;GO:0016020|membrane;GO:0048281|inflorescence morphogenesis | Ro01_G30168 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA131:Ro04_G19009,Ro04_G20861,Ro04_G27906,Ro04_G36409,Ro04_G20866 | AT3G16660 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | Ro04_G36410 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA132:Ro05_G07249,Ro05_G07255,Ro05_G07258,Ro05_G07259,Ro05_G07262 | AT5G56560||AT2G17050 | disease resistance protein (TIR-NBS-LRR class), putative||F-box family protein | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0008150|biological_process;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro05_G13872 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA134:Ro05_G20382,Ro05_G20380,Ro05_G31105,Ro05_G20379,Ro05_G31103 | AT2G33590||AT2G33600 | cinnamoyl-CoA reductase family | GO:0005488|binding;GO:0016621|cinnamoyl-CoA reductase activity;GO:0046686|response to cadmium ion;GO:0003824|catalytic activity;GO:0009809|lignin biosynthetic process;GO:0050662|coenzyme binding;GO:0008152|metabolic process;GO:0044237|cellular metabolic process;GO:0005575|cellular_component | Ro05_G31568 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA141:Ro05_G31196,Ro05_G31200,Ro05_G31207,Ro05_G31208,Ro05_G31205 | AT1G07650||AT1G53430||AT1G16120 | WAKL1; WAKL1 (wall associated kinase-like 1); kinase||leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005618|cell wall | Ro05_G30945 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1457:Ro05_G24331,Ro05_G24332 | AT3G11730||AT1G09630||AT4G17530||AT1G07410||AT3G46830 | ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C; ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding||ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A; ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding||RAB1C, ATRAB1C, ATRABD2C; ATRAB1C; GTP binding||ATRABA2B, RAB-A2B, ATRAB-A2B; ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding||ATFP8, ATRABD1, RABD1; ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding | GO:0006886|intracellular protein transport;GO:0015031|protein transport;GO:0000910|cytokinesis;GO:0003924|GTPase activity;GO:0009504|cell plate;GO:0005886|plasma membrane;GO:0005768|endosome;GO:0005515|protein binding;GO:0030742|GTP-dependent protein binding;GO:0007165|signal transduction;GO:0006913|nucleocytoplasmic transport;GO:0005525|GTP binding;GO:0016020|membrane;GO:0005773|vacuole | Ro05_G11803,Ro06_G23607,Ro03_G19209,Ro07_G34549 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA146:Ro06_G14195,Ro06_G29125,Ro06_G14192,Ro06_G14188,Ro06_G14187 | AT5G53635||AT5G56400||AT5G38390||AT5G03100 | ||F-box family protein | ;GO:0003674|molecular_function;GO:0016491|oxidoreductase activity;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0046914|transition metal ion binding;GO:0005575|cellular_component | Ro03_G32463 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA164:Ro07_G34301,Ro07_G25972,Ro07_G34313,Ro07_G34311,Ro07_G34309 | AT2G23980||AT5G53130||AT4G30560 | ATCNGC6, CNGC6; ATCNGC6; calmodulin binding||ATCNGC9, CNGC9; ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel||CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0046686|response to cadmium ion;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | Ro02_G23493 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA190:Ro02_G35336,Ro02_G35335,Ro02_G35334,Ro02_G35339 | AT5G42240 | scpl42; scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0005618|cell wall | Ro02_G35415,Ro02_G35337 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1935:Ro07_G33860,Ro07_G33859 | AT3G13580||AT2G01250 | 60S ribosomal protein L7 (RPL7D)||60S ribosomal protein L7 (RPL7B) | GO:0030528|transcription regulator activity;GO:0009507|chloroplast;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0015934|large ribosomal subunit;GO:0005886|plasma membrane;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane;GO:0005773|vacuole;GO:0005618|cell wall | Ro04_G36453,Ro04_G13952,Ro04_G36540,Ro06_G14333 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1985:Ro07_G34552,Ro07_G34551 | AT2G39840||AT1G64040||AT3G05580 | TOPP3; TOPP3; protein serine/threonine phosphatase||TOPP4; TOPP4; protein serine/threonine phosphatase||serine/threonine protein phosphatase, putative | GO:0005730|nucleolus;GO:0000164|protein phosphatase type 1 complex;GO:0008150|biological_process;GO:0005634|nucleus;GO:0006470|protein amino acid dephosphorylation;GO:0005737|cytoplasm;GO:0004722|protein serine/threonine phosphatase activity;GO:0005575|cellular_component | Ro04_G21730,Ro05_G16795,Ro06_G18556,Ro06_G28782 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA201:Ro03_G31810,Ro03_G14679,Ro03_G14678,Ro03_G31809 | - | - | - | Ro07_G15047,Ro03_G31747 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA213:Ro03_G33096,Ro03_G33099,Ro03_G33097,Ro03_G05229 | AT5G45890||AT2G27420 | SAG12; SAG12 (SENESCENCE-ASSOCIATED GENE 12); cysteine-type peptidase||cysteine proteinase, putative | GO:0006508|proteolysis;GO:0007568|aging;GO:0010282|senescence associated vacuole;GO:0012505|endomembrane system;GO:0009817|defense response to fungus, incompatible interaction;GO:0009723|response to ethylene stimulus;GO:0010150|leaf senescence | Ro06_G28248,Ro05_G17348 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA216:Ro04_G02811,Ro04_G02812,Ro04_G24688,Ro04_G24689 | AT3G29400||AT3G14470||AT5G35410||AT3G14460 | disease resistance protein (NBS-LRR class), putative||ATEXO70E1; ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding||SOS2, SnRK3.11, CIPK24; SOS2 (SALT OVERLY SENSITIVE 2); kinase/ protein kinase | GO:0000145|exocyst;GO:0005524|ATP binding;GO:0006904|vesicle docking during exocytosis;GO:0006915|apoptosis;GO:0006887|exocytosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0009651|response to salt stress;GO:0004672|protein kinase activity;GO:0006952|defense response;GO:0009705|plant-type vacuole membrane;GO:0016301|kinase activity | Ro06_G20171,Ro01_G10353 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA236:Ro05_G30714,Ro05_G30713,Ro05_G30715,Ro05_G30720 | AT3G59140 | ATMRP14; ATMRP14; ATPase, coupled to transmembrane movement of substances | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0006810|transport | Ro07_G34673,Ro07_G06792 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA257:Ro06_G29131,Ro06_G29133,Ro06_G22374,Ro06_G29132 | AT5G23960 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase | GO:0051762|sesquiterpene biosynthetic process;GO:0016106|sesquiterpenoid biosynthetic process;GO:0005575|cellular_component | Ro04_G36514,Ro06_G29120 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA269:Ro07_G21106,Ro07_G21108,Ro07_G21111,Ro07_G21113 | AT1G64830||AT5G33340 | CDR1; CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase||aspartyl protease family protein | GO:0006508|proteolysis;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0042742|defense response to bacterium;GO:0010310|regulation of hydrogen peroxide metabolic process;GO:0010337|regulation of salicylic acid metabolic process | Ro03_G10885,Ro03_G10886 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA275:Ro07_G26171,Ro07_G34516,Ro07_G34517,Ro07_G16086 | AT1G72000||AT4G09510||AT1G35580 | CINV2; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative||CINV1; CINV1 (cytosolic invertase 1); beta-fructofuranosidase||beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative | GO:0004564|beta-fructofuranosidase activity;GO:0003824|catalytic activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0008150|biological_process;GO:0005634|nucleus;GO:0006520|cellular amino acid metabolic process;GO:0005575|cellular_component;GO:0016020|membrane;GO:0005829|cytosol;GO:0005975|carbohydrate metabolic process | Ro07_G07924,Ro07_G34518 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA301:Ro01_G26346,Ro01_G30069,Ro01_G30068 | AT3G60500||AT5G05000 | CER7, G3; CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding||TOC34, ATTOC34, OEP34; TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding | GO:0009507|chloroplast;GO:0045036|protein targeting to chloroplast;GO:0003924|GTPase activity;GO:0019750|chloroplast localization;GO:0009941|chloroplast envelope;GO:0006396|RNA processing;GO:0005525|GTP binding;GO:0010025|wax biosynthetic process;GO:0005634|nucleus;GO:0003723|RNA binding;GO:0009707|chloroplast outer membrane;GO:0005737|cytoplasm;GO:0000175|3'-5'-exoribonuclease activity | Ro07_G26764,Ro06_G26348,Ro04_G37216 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA364:Ro02_G36036,Ro02_G36033,Ro02_G36031 | - | - | - | Ro02_G35611,Ro02_G36032,Ro05_G31698 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA418:Ro03_G32373,Ro03_G32372,Ro03_G32370 | AT5G20950||AT5G04885 | glycosyl hydrolase family 3 protein | GO:0031225|anchored to membrane;GO:0016020|membrane;GO:0009505|plant-type cell wall;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | Ro07_G34078,Ro01_G30346,Ro03_G32371 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA567:Ro06_G29162,Ro06_G29164,Ro06_G29163 | AT5G66900||AT5G66910||AT4G33300 | disease resistance protein (CC-NBS-LRR class), putative||ADR1-L1; ADR1-L1 (ADR1-like 1); ATP binding / protein binding | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | Ro01_G29654,Ro01_G29656,Ro01_G29652 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA575:Ro07_G05960,Ro07_G05964,Ro07_G33478 | AT4G00110||AT3G23820||AT4G30440||AT4G12250 | GAE5; GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5); UDP-glucuronate 4-epimerase/ catalytic||GAE3; GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic||GAE6; GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); UDP-glucuronate 4-epimerase/ catalytic||GAE1; GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic | GO:0009225|nucleotide-sugar metabolic process;GO:0003824|catalytic activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0050378|UDP-glucuronate 4-epimerase activity;GO:0044237|cellular metabolic process;GO:0016020|membrane;GO:0005975|carbohydrate metabolic process | Ro04_G12940,Ro04_G23760,Ro05_G08587 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA651:Ro01_G02926,Ro01_G02929 | AT2G33730||AT1G54270 | EIF4A-2; EIF4A-2; ATP-dependent helicase/ translation initiation factor||DEAD box RNA helicase, putative | GO:0046686|response to cadmium ion;GO:0008026|ATP-dependent helicase activity;GO:0005886|plasma membrane;GO:0003676|nucleic acid binding;GO:0004386|helicase activity;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005524|ATP binding;GO:0005829|cytosol;GO:0003743|translation initiation factor activity | Ro07_G19865,Ro02_G17704,Ro04_G19004,Ro02_G04503 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA69:Ro01_G02907,Ro01_G02908,Ro01_G29586,Ro01_G29589,Ro01_G02911,Ro01_G02912 | AT3G47590||AT1G29840 | esterase/lipase/thioesterase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003824|catalytic activity | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA712:Ro01_G26048,Ro01_G30321 | AT1G53440||AT1G53430 | leucine-rich repeat family protein / protein kinase family protein | GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | Ro01_G30419,Ro07_G23749,Ro06_G22441,Ro06_G29192 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA73:Ro02_G18380,Ro02_G18382,Ro02_G35291,Ro02_G35290,Ro02_G18386,Ro02_G35289 | AT2G17080||AT3G12500 | unknown protein||ATHCHIB, PR3, PR-3, CHI-B, B-CHI; ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0009871|jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway;GO:0050832|defense response to fungus;GO:0008150|biological_process;GO:0004568|chitinase activity;GO:0005773|vacuole | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA74:Ro02_G26236,Ro02_G35903,Ro02_G35899,Ro02_G20115,Ro02_G35909,Ro02_G35908 | AT3G18990||AT2G16210||AT5G18090||AT1G62260 | transcriptional factor B3 family protein||VRN1, REM39; VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor||pentatricopeptide (PPR) repeat-containing protein | GO:0010048|vernalization response;GO:0003674|molecular_function;GO:0003677|DNA binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0005654|nucleoplasm;GO:0005575|cellular_component;GO:0016554|cytidine to uridine editing;GO:0006355|regulation of transcription, DNA-dependent;GO:0016564|transcription repressor activity | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA75:Ro02_G27501,Ro02_G26676,Ro02_G26677,Ro02_G26683,Ro02_G00466,Ro02_G21280 | AT1G77120 | ADH1, ADH, ATADH, ATADH1; ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase | GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0009651|response to salt stress | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA76:Ro02_G35381,Ro02_G22063,Ro02_G35377,Ro02_G35376,Ro02_G35380,Ro02_G35373 | AT2G20710 | pentatricopeptide (PPR) repeat-containing protein | GO:0005739|mitochondrion;GO:0008150|biological_process | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA82:Ro04_G22241,Ro04_G36285,Ro04_G36287,Ro04_G36286,Ro04_G36288,Ro04_G22240 | AT1G67730||AT1G24470 | YBR159, KCR1; YBR159; ketoreductase/ oxidoreductase||KCR2; short-chain dehydrogenase/reductase (SDR) family protein | GO:0009790|embryonic development;GO:0042761|very-long-chain fatty acid biosynthetic process;GO:0016491|oxidoreductase activity;GO:0005783|endoplasmic reticulum;GO:0018454|acetoacetyl-CoA reductase activity;GO:0008152|metabolic process;GO:0045703|ketoreductase activity;GO:0016020|membrane;GO:0042335|cuticle development | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA83:Ro04_G36426,Ro04_G36425,Ro04_G16117,Ro04_G16113,Ro04_G36454,Ro04_G36451 | AT3G07870 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA84:Ro04_G36796,Ro04_G36793,Ro04_G36799,Ro04_G36795,Ro04_G36809,Ro04_G36808 | AT3G50120||AT2G36430 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA88:Ro05_G31667,Ro05_G31655,Ro05_G14511,Ro05_G22369,Ro05_G31687,Ro05_G22172 | AT1G11870||AT5G04700 | ATSRS, SRS; SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0007005|mitochondrion organization;GO:0009658|chloroplast organization;GO:0043039|tRNA aminoacylation;GO:0008150|biological_process;GO:0004828|serine-tRNA ligase activity;GO:0048481|ovule development;GO:0005739|mitochondrion;GO:0006434|seryl-tRNA aminoacylation;GO:0005575|cellular_component | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA91:Ro06_G19536,Ro06_G19532,Ro06_G19531,Ro06_G19530,Ro06_G19525,Ro06_G26688 | AT3G46530||AT1G58400||AT1G53350 | disease resistance protein (CC-NBS-LRR class), putative||RPP13; RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding||ATP binding | GO:0009814|defense response, incompatible interaction;GO:0006915|apoptosis;GO:0005886|plasma membrane;GO:0009626|plant-type hypersensitive response;GO:0006952|defense response;GO:0005737|cytoplasm;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA93:Ro06_G24862,Ro06_G27649,Ro06_G23073,Ro06_G23076,Ro06_G23080,Ro06_G23084 | AT3G57240||AT3G57270 | BG1; BG1 (BETA-1,3-GLUCANASE 1); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds||BG3; BG3 (BETA-1,3-GLUCANASE 3); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds | GO:0008810|cellulase activity;GO:0003824|catalytic activity;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0009617|response to bacterium;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA94:Ro06_G28457,Ro06_G28455,Ro06_G28453,Ro06_G28454,Ro06_G11112,Ro06_G11111 | AT3G14225||AT1G53940||AT5G40990||AT1G53920 | GLIP2; GLIP2; arylesterase/ carboxylesterase/ lipase||GLIP1; GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase||GLIP5; GLIP5; carboxylesterase/ lipase||GLIP4; GLIP4; carboxylesterase/ lipase | GO:0006629|lipid metabolic process;GO:0016298|lipase activity;GO:0012505|endomembrane system;GO:0005615|extracellular space;GO:0050832|defense response to fungus;GO:0004091|carboxylesterase activity;GO:0042742|defense response to bacterium;GO:0009866|induced systemic resistance, ethylene mediated signaling pathway;GO:0009751|response to salicylic acid stimulus;GO:0009620|response to fungus | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA981:Ro03_G02018,Ro03_G02021 | AT3G46030||AT2G28720 | histone H2B, putative||HTB11; HTB11; DNA binding | GO:0003677|DNA binding;GO:0005634|nucleus;GO:0006334|nucleosome assembly;GO:0000786|nucleosome | Ro03_G14539,Ro03_G02032,Ro06_G13140,Ro06_G06165 | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA99:Ro07_G33647,Ro07_G33646,Ro07_G33650,Ro07_G33653,Ro07_G33651,Ro07_G33652 | AT3G47570||AT3G47580||AT3G47090||AT5G39390 | leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 6 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1067:Ro03_G16229,Ro03_G16230;TA1197:Ro04_G00100,Ro04_G00099 | AT2G28940||AT1G07570||AT2G02800||AT2G23460 | APK2B; APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||protein kinase family protein||APK1A, APK1; APK1A; kinase/ protein serine/threonine kinase||XLG1, ATXLG1; XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer | GO:0012505|endomembrane system;GO:0009750|response to fructose stimulus;GO:0009749|response to glucose stimulus;GO:0005524|ATP binding;GO:0009744|response to sucrose stimulus;GO:0010555|response to mannitol stimulus;GO:0009737|response to abscisic acid stimulus;GO:0004871|signal transducer activity;GO:0019001|guanyl nucleotide binding;GO:0004674|protein serine/threonine kinase activity;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0016301|kinase activity;GO:0010015|root morphogenesis;GO:0006499|N-terminal protein myristoylation;GO:0007186|G-protein coupled receptor protein signaling pathway;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation | Ro07_G19419,Ro03_G27386 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1174:Ro03_G32798,Ro03_G32797;TA1489:Ro05_G30585,Ro05_G01743 | AT5G46830||AT5G46760 | basic helix-loop-helix (bHLH) family protein | GO:0042538|hyperosmotic salinity response;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0009651|response to salt stress;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0005509|calcium ion binding | Ro07_G33745,Ro07_G33766 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA174:Ro01_G29869,Ro01_G29868,Ro01_G29867,Ro01_G29865;TA1143:Ro03_G32216,Ro03_G32215 | AT1G22370||AT1G22380 | AtUGT85A5; AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups||AtUGT85A3; AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups | GO:0015020|glucuronosyltransferase activity;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA176:Ro01_G29937,Ro01_G29934,Ro01_G29938,Ro01_G29935;TA707:Ro01_G24900,Ro01_G30171 | AT3G18670 | ankyrin repeat family protein | GO:0005515|protein binding | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA177:Ro01_G30165,Ro01_G23804,Ro01_G24899,Ro01_G30170;TA773:Ro01_G30166,Ro01_G24896 | AT3G18670||AT5G04680 | ankyrin repeat family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 351 Blast hits to 330 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 2; Plants - 240; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | GO:0005515|protein binding;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0008150|biological_process | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1836:Ro07_G16077,Ro07_G20631;TA1846:Ro07_G18773,Ro07_G18771 | AT2G39510||AT4G27940||AT5G13660 | ATMTM1, MTM1; mitochondrial substrate carrier family protein||unknown protein||nodulin MtN21 family protein | GO:0003674|molecular_function;GO:0005488|binding;GO:0005743|mitochondrial inner membrane;GO:0006810|transport;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0006839|mitochondrial transport;GO:0005575|cellular_component;GO:0016020|membrane | Ro07_G13996,Ro05_G20018 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1855:Ro07_G20243,Ro07_G20241;TA1875:Ro07_G23425,Ro07_G05956 | AT3G47370||AT4G00100||AT3G45030 | 40S ribosomal protein S20 (RPS20B)||40S ribosomal protein S20 (RPS20A)||ATRPS13A, RPS13, PFL2; ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome | GO:0010090|trichome morphogenesis;GO:0005730|nucleolus;GO:0003735|structural constituent of ribosome;GO:0006412|translation;GO:0022626|cytosolic ribosome;GO:0015935|small ribosomal subunit;GO:0000911|cytokinesis by cell plate formation;GO:0003723|RNA binding;GO:0009965|leaf morphogenesis;GO:0016020|membrane;GO:0022627|cytosolic small ribosomal subunit;GO:0005618|cell wall | Ro04_G15184,Ro02_G35580 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA226:Ro04_G36458,Ro04_G36460,Ro04_G36462,Ro04_G36459;TA1311:Ro04_G36465,Ro04_G36461 | AT5G19160||AT3G06080||AT4G26400||AT2G15580 | zinc finger (C3HC4-type RING finger) family protein||unknown protein | GO:0010200|response to chitin;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0005575|cellular_component | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA265:Ro07_G12722,Ro07_G34259,Ro07_G34260,Ro07_G34258;TA866:Ro02_G13757,Ro02_G35153 | AT2G41850||AT3G07970 | QRT2; QRT2 (QUARTET 2); polygalacturonase||PGAZAT, ADPG2; PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase | GO:0009830|cell wall modification involved in abscission;GO:0010047|fruit dehiscence;GO:0010227|floral organ abscission;GO:0012505|endomembrane system;GO:0004650|polygalacturonase activity;GO:0045490|pectin catabolic process;GO:0009901|anther dehiscence;GO:0048235|pollen sperm cell differentiation;GO:0005975|carbohydrate metabolic process | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA283:Ro07_G34063,Ro07_G34062,Ro07_G34065,Ro07_G34064;TA711:Ro01_G25911,Ro01_G30471 | - | - | - | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA362:Ro02_G35884,Ro02_G35886,Ro02_G35910;TA635:Ro01_G00938,Ro01_G29692 | AT1G34300||AT2G23450 | protein kinase family protein||lectin protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro04_G37058 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA376:Ro03_G10881,Ro03_G10882,Ro03_G10883;TA535:Ro06_G19214,Ro06_G25125,Ro06_G25126 | AT5G45160||AT1G72960||AT3G13870 | root hair defective 3 GTP-binding (RHD3) family protein||RHD3; RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding | GO:0006888|ER to Golgi vesicle-mediated transport;GO:0009832|plant-type cell wall biogenesis;GO:0005886|plasma membrane;GO:0005525|GTP binding;GO:0005783|endoplasmic reticulum;GO:0030036|actin cytoskeleton organization;GO:0005575|cellular_component;GO:0009932|cell tip growth;GO:0010053|root epidermal cell differentiation;GO:0005737|cytoplasm;GO:0000166|nucleotide binding | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA401:Ro03_G31744,Ro03_G31745,Ro03_G31748;TA404:Ro03_G31813,Ro03_G31814,Ro03_G31821 | AT5G55930||AT4G26590 | ATOPT5, OPT5; OPT5 (OLIGOPEPTIDE TRANSPORTER 5); oligopeptide transporter||ATOPT1, OPT1; OPT1 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter | GO:0016020|membrane;GO:0015198|oligopeptide transporter activity;GO:0006857|oligopeptide transport | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA416:Ro03_G32351,Ro03_G32348,Ro03_G32349;TA1708:Ro06_G28161,Ro06_G26812 | - | - | - | Ro06_G29172 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA458:Ro04_G23314,Ro04_G18641,Ro04_G25635;TA1288:Ro04_G27002,Ro04_G27001 | AT3G54420 | ATEP3, ATCHITIV, CHIV; ATEP3; chitinase | GO:0005618|cell wall | Ro04_G27125 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA518:Ro06_G08250,Ro06_G08249,Ro06_G08247;TA1579:Ro06_G08272,Ro06_G28790 | AT1G60690||AT1G60750||AT1G60710 | ATB2; ATB2; oxidoreductase||aldo/keto reductase family protein||oxidoreductase | GO:0004033|aldo-keto reductase activity;GO:0046686|response to cadmium ion;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0055114|oxidation reduction;GO:0009941|chloroplast envelope | Ro04_G36844 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA579:Ro07_G11998,Ro07_G34500,Ro07_G34496;TA781:Ro01_G30267,Ro01_G30266 | AT3G56800||AT1G66410||AT5G21274||AT3G43810 | CAM3, acam-3; CAM3 (CALMODULIN 3); calcium ion binding||CAM7; CAM7 (CALMODULIN 7); calcium ion binding||CAM6, ACAM-6; CAM6 (CALMODULIN 6); calcium ion binding||CAM4, ACAM-4; CAM4 (calmodulin 4); calcium ion binding / signal transducer | GO:0005513|detection of calcium ion;GO:0005886|plasma membrane;GO:0005509|calcium ion binding;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0010099|regulation of photomorphogenesis;GO:0005773|vacuole | Ro05_G03657 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA629:Ro07_G34740,Ro07_G34739,Ro07_G34741;TA630:Ro07_G34764,Ro07_G34763,Ro07_G34760 | AT5G60060 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA985:Ro03_G02106,Ro03_G02107;TA1564:Ro06_G06098,Ro06_G06101 | AT5G60020 | LAC17, ATLAC17; LAC17 (laccase 17); laccase | GO:0046274|lignin catabolic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity | Ro03_G32027,Ro03_G12826 | 6 | 2 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G19760||AT2G19770 | PFN1, PRF1; PRF1 (PROFILIN 1); actin binding||PRF5; PRF5 (PROFILIN5); actin binding / actin monomer binding | GO:0005737|cytoplasm;GO:0009524|phragmoplast;GO:0005819|spindle;GO:0003785|actin monomer binding;GO:0003779|actin binding;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0030036|actin cytoskeleton organization;GO:0005634|nucleus;GO:0009826|unidimensional cell growth;GO:0008154|actin polymerization or depolymerization;GO:0015629|actin cytoskeleton;GO:0007010|cytoskeleton organization;GO:0005618|cell wall | Ro01_G00833,Ro06_G20161,Ro02_G00662,Ro02_G35040,Ro05_G08612 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G19510||AT2G21650||AT1G75250||AT4G39250 | ATRL6; ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor||ATRL5; ATRL5 (ARABIDOPSIS RAD-LIKE 5); DNA binding / transcription factor||MEE3, ATRL2; MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor||ATRL1; ATRL1 (ARABIDOPSIS RAD-LIKE 1); DNA binding / transcription factor | GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0006355|regulation of transcription, DNA-dependent;GO:0009793|embryonic development ending in seed dormancy | Ro01_G01052,Ro02_G10128,Ro02_G10120,Ro02_G02356,Ro02_G02365 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G49870||AT5G37680||AT1G10200 | ATARLA1A; ATARLA1A (ADP-ribosylation factor-like A1A); GTP binding||ATARLA1C; ATARLA1C (ADP-ribosylation factor-like A1C); GTP binding||WLIM1; WLIM1; transcription factor/ zinc ion binding | GO:0005886|plasma membrane;GO:0008270|zinc ion binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005525|GTP binding;GO:0005773|vacuole | Ro01_G04244,Ro01_G05350,Ro02_G25334,Ro02_G00493,Ro05_G03517 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G43790||AT3G45640||AT4G01370||AT1G07880 | ATMPK4, MPK4; ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase||ATMPK3, MPK3; ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein binding / protein kinase||ATMPK13; ATMPK13; MAP kinase/ kinase||ATMPK6, MPK6, MAPK6; ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase | GO:0010200|response to chitin;GO:0000169|activation of MAPK activity involved in osmosensory signaling pathway;GO:0006950|response to stress;GO:0009617|response to bacterium;GO:0042539|hypotonic salinity response;GO:0009611|response to wounding;GO:0000302|response to reactive oxygen species;GO:0010120|camalexin biosynthetic process;GO:0016310|phosphorylation;GO:0009868|jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway;GO:0009737|response to abscisic acid stimulus;GO:0009607|response to biotic stimulus;GO:0009409|response to cold;GO:0009723|response to ethylene stimulus;GO:0006979|response to oxidative stress;GO:0009738|abscisic acid mediated signaling pathway;GO:0042542|response to hydrogen peroxide;GO:0042742|defense response to bacterium;GO:0005634|nucleus;GO:0006970|response to osmotic stress;GO:0005737|cytoplasm;GO:0006972|hyperosmotic response;GO:0016301|kinase activity;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0009864|induced systemic resistance, jasmonic acid mediated signaling pathway;GO:0005515|protein binding;GO:0009651|response to salt stress;GO:0009861|jasmonic acid and ethylene-dependent systemic resistance;GO:0048481|ovule development;GO:0004707|MAP kinase activity;GO:0004672|protein kinase activity;GO:0007165|signal transduction;GO:0010375|stomatal complex patterning;GO:0005575|cellular_component;GO:0010374|stomatal complex development;GO:0009620|response to fungus | Ro01_G05013,Ro03_G02137,Ro07_G04363,Ro03_G02126,Ro05_G11468 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G34480 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | Ro01_G11264,Ro02_G35125,Ro05_G31738,Ro05_G31560,Ro07_G34501 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G72220 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | Ro01_G12245,Ro05_G30768,Ro02_G35046,Ro03_G11053,Ro06_G04826 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G29170 | ATMND1; ATMND1 | GO:0003674|molecular_function;GO:0006302|double-strand break repair;GO:0009553|embryo sac development;GO:0010212|response to ionizing radiation;GO:0009555|pollen development;GO:0005575|cellular_component | Ro01_G15198,Ro07_G34526,Ro02_G05989,Ro04_G36205,Ro04_G36999 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G17718,Ro03_G32308,Ro03_G31783,Ro05_G30859,Ro07_G34102 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G36740 | PHD finger family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | Ro01_G19389,Ro04_G36697,Ro02_G04072,Ro02_G35300,Ro04_G36735 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G41770 | crooked neck protein, putative / cell cycle protein, putative | GO:0006396|RNA processing;GO:0005488|binding;GO:0005622|intracellular | Ro01_G19618,Ro06_G29168,Ro03_G32092,Ro04_G36643,Ro06_G29173 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G12380 | ATARP5; ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton | GO:0006281|DNA repair;GO:0005200|structural constituent of cytoskeleton;GO:0030029|actin filament-based process;GO:0007275|multicellular organismal development;GO:0005634|nucleus | Ro01_G23507,Ro01_G30244,Ro07_G19438,Ro02_G35000,Ro05_G31700 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G27715,Ro01_G29676,Ro06_G14416,Ro06_G28960,Ro07_G34386 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29469,Ro07_G04781,Ro04_G37256,Ro06_G21957,Ro04_G37257 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29519,Ro01_G29895,Ro03_G31854,Ro02_G34891,Ro04_G36787 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G21660 | ATGRP7, CCR2, GR-RBP7, GRP7; CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | GO:0010119|regulation of stomatal movement;GO:0007623|circadian rhythm;GO:0003723|RNA binding;GO:0032508|DNA duplex unwinding;GO:0009409|response to cold;GO:0045087|innate immune response;GO:0005777|peroxisome;GO:0009507|chloroplast;GO:0003697|single-stranded DNA binding;GO:0046686|response to cadmium ion;GO:0010228|vegetative to reproductive phase transition of meristem;GO:0005634|nucleus;GO:0006406|mRNA export from nucleus;GO:0006970|response to osmotic stress;GO:0010501|RNA secondary structure unwinding;GO:0005737|cytoplasm;GO:0003690|double-stranded DNA binding;GO:0009651|response to salt stress;GO:0010043|response to zinc ion | Ro01_G29531,Ro01_G30319,Ro06_G12522,Ro02_G10129,Ro04_G36106 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29553,Ro02_G34871,Ro02_G35002,Ro02_G35768,Ro03_G32582 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G04820||AT5G19770 | TUA4; TUA4; structural constituent of cytoskeleton||TUA3; TUA3; structural constituent of cytoskeleton | GO:0009507|chloroplast;GO:0007017|microtubule-based process;GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0005200|structural constituent of cytoskeleton;GO:0045298|tubulin complex;GO:0005829|cytosol;GO:0005618|cell wall | Ro01_G29803,Ro02_G26112,Ro06_G22354,Ro03_G08082,Ro05_G11182 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29841,Ro03_G31778,Ro02_G34946,Ro04_G36262,Ro02_G35146 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G29875,Ro02_G35283,Ro03_G32671,Ro02_G35315,Ro03_G32832 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30081,Ro05_G31045,Ro03_G31788,Ro06_G29307,Ro05_G31059 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30121,Ro04_G36476,Ro02_G34855,Ro07_G34598,Ro06_G29100 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G06910 | ULP1A; ULP1A (UB-LIKE PROTEASE 1A); SUMO-specific protease/ cysteine-type peptidase | GO:0006508|proteolysis;GO:0005575|cellular_component;GO:0016926|protein desumoylation | Ro01_G30146,Ro03_G32633,Ro03_G32558,Ro06_G09257,Ro06_G29319 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30196,Ro03_G32007,Ro02_G15485,Ro06_G29161,Ro06_G28933 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro01_G30220,Ro03_G32540,Ro07_G34378,Ro04_G26879,Ro06_G28128 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G20970||AT2G31970 | NFU4, ATNFU2; NFU4; structural molecule||RAD50, ATRAD50; RAD50; ATP binding / nuclease/ zinc ion binding | GO:0005737|cytoplasm;GO:0006302|double-strand break repair;GO:0006281|DNA repair;GO:0008270|zinc ion binding;GO:0016233|telomere capping;GO:0030870|Mre11 complex;GO:0005198|structural molecule activity;GO:0004518|nuclease activity;GO:0005634|nucleus;GO:0006312|mitotic recombination;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0000723|telomere maintenance;GO:0016226|iron-sulfur cluster assembly | Ro01_G30372,Ro06_G13110,Ro01_G30373,Ro04_G26382,Ro02_G35309 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G13210 | CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24780.1); Has 250 Blast hits to 233 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 23; Plants - 45; Viruses - 15; Other Eukaryotes - 159 (source: NCBI BLink). | - | Ro01_G30409,Ro04_G24362,Ro06_G28137,Ro03_G32404,Ro07_G34376 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G62830||AT3G53520||AT3G46440 | UXS5; UXS5; UDP-glucuronate decarboxylase/ catalytic||UXS2, ATUXS2, AUD1; AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase||UXS1, ATUXS1; UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); UDP-glucuronate decarboxylase/ catalytic | GO:0000139|Golgi membrane;GO:0042732|D-xylose metabolic process;GO:0009507|chloroplast;GO:0009225|nucleotide-sugar metabolic process;GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0048040|UDP-glucuronate decarboxylase activity;GO:0005794|Golgi apparatus;GO:0019305|dTDP-rhamnose biosynthetic process;GO:0016020|membrane;GO:0008460|dTDP-glucose 4,6-dehydratase activity | Ro02_G01342,Ro06_G06192,Ro07_G20643,Ro03_G31997,Ro04_G20864 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G22004,Ro07_G33567,Ro07_G33785,Ro04_G36947,Ro03_G12423 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G12040 | carbon-nitrogen hydrolase family protein | GO:0016810|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;GO:0009507|chloroplast;GO:0008270|zinc ion binding;GO:0006807|nitrogen compound metabolic process | Ro02_G23476,Ro06_G27262,Ro05_G31284,Ro07_G17250,Ro02_G34949 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G21750||AT4G04890 | ATML1; ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor||PDF2; PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor | GO:0048825|cotyledon development;GO:0009913|epidermal cell differentiation;GO:0043565|sequence-specific DNA binding;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | Ro02_G27380,Ro07_G33792,Ro06_G29434,Ro03_G32190,Ro07_G33618 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G34881,Ro04_G36478,Ro03_G33094,Ro05_G31583,Ro06_G26684 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G25960 | PGP2; PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances | GO:0006810|transport;GO:0016020|membrane | Ro02_G35011,Ro04_G36496,Ro05_G26949,Ro07_G34538,Ro06_G25995 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35325,Ro06_G28830,Ro05_G30603,Ro03_G32344,Ro07_G34529 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G27210||AT3G05010 | transmembrane protein, putative||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: transmembrane protein, putative (TAIR:AT3G05010.1); Has 99 Blast hits to 99 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0016020|membrane | Ro02_G35342,Ro04_G17513,Ro04_G37197,Ro06_G06669,Ro04_G36626 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G08267 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro02_G35568,Ro03_G32322,Ro04_G24656,Ro06_G29170,Ro07_G25971 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G09510 | nucleic acid binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | Ro02_G35619,Ro07_G33611,Ro04_G36117,Ro07_G34426,Ro07_G34425 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G68040 | S-adenosyl-L-methionine:carboxyl methyltransferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0008757|S-adenosylmethionine-dependent methyltransferase activity;GO:0008168|methyltransferase activity | Ro02_G35807,Ro05_G31363,Ro05_G03570,Ro05_G01769,Ro07_G33807 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35820,Ro06_G28827,Ro06_G29130,Ro07_G21215,Ro03_G32193 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT4G24270||AT3G48430 | REF6; REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding||RNA recognition motif (RRM)-containing protein | GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0035067|negative regulation of histone acetylation;GO:0010228|vegetative to reproductive phase transition of meristem;GO:0005634|nucleus;GO:0009826|unidimensional cell growth;GO:0048366|leaf development;GO:0003723|RNA binding;GO:0033169|histone H3-K9 demethylation;GO:0000166|nucleotide binding;GO:0009741|response to brassinosteroid stimulus;GO:0009793|embryonic development ending in seed dormancy | Ro02_G35824,Ro03_G27058,Ro04_G37250,Ro05_G22329,Ro05_G22157 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro02_G35913,Ro06_G23917,Ro03_G32332,Ro07_G34320,Ro06_G29374 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G60860||AT5G45750||AT1G16920||AT1G06400 | RAB11, ATRABA1B; ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding||ARA2, ATRABA1A, ATRAB11E, ARA-2; ARA-2; GTP binding||AtRABA1f; AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding||AtRABA1c; AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding | GO:0015031|protein transport;GO:0005886|plasma membrane;GO:0005634|nucleus;GO:0005525|GTP binding;GO:0005773|vacuole | Ro03_G05187,Ro03_G10055,Ro03_G05286,Ro03_G19084,Ro06_G24981 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT5G07610 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function | Ro03_G05922,Ro05_G19162,Ro05_G19135,Ro05_G31725,Ro05_G25930 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G14681,Ro06_G29118,Ro03_G32468,Ro06_G29069,Ro06_G28530 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G58040||AT3G61790 | SINAT2; SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding||seven in absentia (SINA) family protein | GO:0016567|protein ubiquitination;GO:0005515|protein binding;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0008270|zinc ion binding;GO:0007275|multicellular organismal development;GO:0005634|nucleus;GO:0004842|ubiquitin-protein ligase activity | Ro03_G20731,Ro06_G15519,Ro05_G12114,Ro07_G07948,Ro07_G34677 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G23005,Ro05_G31007,Ro05_G31481,Ro06_G28697,Ro06_G18344 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT1G09700||AT4G24490 | protein prenyltransferase||HYL1, DRB1; HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding | GO:0035198|miRNA binding;GO:0009733|response to auxin stimulus;GO:0046686|response to cadmium ion;GO:0005515|protein binding;GO:0008318|protein prenyltransferase activity;GO:0035279|mRNA cleavage involved in gene silencing by miRNA;GO:0003725|double-stranded RNA binding;GO:0010445|nuclear dicing body;GO:0009737|response to abscisic acid stimulus;GO:0005634|nucleus;GO:0035196|production of miRNAs involved in gene silencing by miRNA;GO:0010267|production of ta-siRNAs involved in RNA interference;GO:0009735|response to cytokinin stimulus | Ro03_G23345,Ro05_G04597,Ro05_G22827,Ro04_G21003,Ro05_G04596 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G09510||AT1G40390 | nucleic acid binding||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43760.1); Has 480 Blast hits to 479 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | Ro03_G31873,Ro04_G37238,Ro07_G34773,Ro05_G30994,Ro05_G30995 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G32395,Ro05_G30522,Ro03_G32461,Ro07_G24719,Ro05_G30988 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro03_G32473,Ro06_G14587,Ro03_G33051,Ro04_G36197,Ro07_G33954 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT2G44200 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro04_G12954,Ro07_G33282,Ro05_G31014,Ro06_G29143,Ro07_G23193 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro04_G16694,Ro07_G34232,Ro05_G30949,Ro07_G14829,Ro06_G28102 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | AT3G05850 | transposable element gene | - | Ro04_G36711,Ro05_G31393,Ro04_G36714,Ro07_G34462,Ro06_G29423 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| - | - | - | - | Ro04_G37062,Ro06_G29351,Ro05_G31228,Ro05_G31394,Ro06_G29149 | 5 | 0 | Rubus occidentalis | Roccidentalis | |||
| TA102:Ro01_G03189,Ro01_G30309,Ro01_G30311,Ro01_G30310,Ro01_G30312 | AT2G13680 | CALS5, GLS2, ATGSL02; CALS5 (CALLOSE SYNTHASE 5); 1,3-beta-glucan synthase | GO:0016020|membrane | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA105:Ro01_G29819,Ro01_G29824,Ro01_G29820,Ro01_G29822,Ro01_G29821 | AT5G53130||AT1G01340 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC10, CNGC10, ACBK1; ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA106:Ro01_G29988,Ro01_G13303,Ro01_G13302,Ro01_G27507,Ro01_G16643 | AT3G02720 | DJ-1 family protein / protease-related | GO:0016798|hydrolase activity, acting on glycosyl bonds | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA109:Ro02_G00465,Ro02_G21281,Ro02_G35343,Ro02_G26519,Ro02_G26518 | AT3G05220||AT1G01490||AT3G05920 | heavy-metal-associated domain-containing protein | GO:0030001|metal ion transport;GO:0005575|cellular_component;GO:0046872|metal ion binding | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA110:Ro02_G02438,Ro02_G34812,Ro02_G34813,Ro02_G34814,Ro02_G34815 | AT5G25900||AT4G31940||AT4G31970||AT4G31950 | CYP82C2; CYP82C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||GA3, CYP701A3, ATKO1; GA3 (GA REQUIRING 3); ent-kaurene oxidase/ oxygen binding||CYP82C4; CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP82C3; CYP82C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0009740|gibberellic acid mediated signaling pathway;GO:0010241|ent-kaurene oxidase activity;GO:0009686|gibberellin biosynthetic process;GO:0005506|iron ion binding;GO:0020037|heme binding;GO:0012505|endomembrane system;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0009707|chloroplast outer membrane;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0005792|microsome | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA111:Ro02_G04542,Ro02_G34954,Ro02_G04545,Ro02_G04546,Ro02_G04549 | AT2G16720||AT5G35550||AT1G22640||AT5G14750 | TT2, ATMYB123, MYB123, ATTT2; TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor||ATMYB3, MYB3; MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor||WER, ATMYB66, WER1; ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator||MYB7, ATMYB7, ATY49; MYB7 (MYB DOMAIN PROTEIN 7); DNA binding / transcription factor | GO:0030528|transcription regulator activity;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0010023|proanthocyanidin biosynthetic process;GO:0009611|response to wounding;GO:0003700|transcription factor activity;GO:0009651|response to salt stress;GO:0009800|cinnamic acid biosynthetic process;GO:0009892|negative regulation of metabolic process;GO:0009737|response to abscisic acid stimulus;GO:0045165|cell fate commitment;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009751|response to salicylic acid stimulus | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA113:Ro02_G20974,Ro02_G35425,Ro02_G26309,Ro02_G35431,Ro02_G16565 | AT5G23960 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase | GO:0051762|sesquiterpene biosynthetic process;GO:0016106|sesquiterpenoid biosynthetic process;GO:0005575|cellular_component | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA116:Ro02_G35132,Ro02_G35131,Ro02_G35133,Ro02_G35130,Ro02_G35134 | AT1G06620||AT5G59530 | 2-oxoglutarate-dependent dioxygenase, putative | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0010302|2-oxoglutarate-dependent dioxygenase activity;GO:0016757|transferase activity, transferring glycosyl groups | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1185:Ro03_G32966,Ro03_G32965 | AT3G05650||AT2G34930||AT4G13920 | AtRLP32; AtRLP32 (Receptor Like Protein 32); kinase/ protein binding||AtRLP50; AtRLP50 (Receptor Like Protein 50); kinase/ protein binding||disease resistance family protein | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005618|cell wall | Ro03_G32962,Ro03_G32967,Ro04_G36471 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA120:Ro03_G23268,Ro03_G32995,Ro03_G32996,Ro03_G15862,Ro03_G15861 | AT3G20730||AT1G79220 | pentatricopeptide (PPR) repeat-containing protein||mitochondrial transcription termination factor family protein / mTERF family protein | GO:0008150|biological_process;GO:0005488|binding;GO:0012505|endomembrane system | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA122:Ro03_G32205,Ro03_G32206,Ro03_G32204,Ro03_G32207,Ro03_G32225 | AT4G16260 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0043169|cation binding;GO:0009651|response to salt stress;GO:0009817|defense response to fungus, incompatible interaction;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005618|cell wall | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1251:Ro04_G18064,Ro04_G18067 | AT4G02080||AT1G56330 | SAR1, ATSAR1, ATSARA1B, ATSAR1B; ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding||ASAR1, ATSARA1C, ATSAR2; ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding | GO:0006886|intracellular protein transport;GO:0006888|ER to Golgi vesicle-mediated transport;GO:0005886|plasma membrane;GO:0005783|endoplasmic reticulum;GO:0000300|peripheral to membrane of membrane fraction;GO:0005525|GTP binding;GO:0005829|cytosol | Ro06_G23809,Ro05_G19133,Ro05_G31548 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA125:Ro03_G32386,Ro03_G32412,Ro03_G32417,Ro03_G32416,Ro03_G32413 | AT1G08440||AT1G08430 | CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter (TAIR:AT1G08430.1); Has 377 Blast hits to 376 proteins in 91 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 4; Plants - 211; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).||ALMT1, ATALMT1; ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter | ;GO:0010044|response to aluminum ion;GO:0005575|cellular_component;GO:0015140|malate transmembrane transporter activity | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA128:Ro03_G32985,Ro03_G32984,Ro03_G32987,Ro03_G32986,Ro03_G32988 | AT2G38970||AT5G60710||AT1G08050 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0005886|plasma membrane;GO:0004842|ubiquitin-protein ligase activity;GO:0006499|N-terminal protein myristoylation | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1326:Ro04_G36688,Ro04_G22938 | AT4G16710 | glycosyltransferase family protein 28 | GO:0016757|transferase activity, transferring glycosyl groups;GO:0030259|lipid glycosylation;GO:0030246|carbohydrate binding;GO:0016758|transferase activity, transferring hexosyl groups;GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0005975|carbohydrate metabolic process | Ro04_G16105,Ro06_G02851,Ro05_G17800 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1329:Ro04_G36718,Ro04_G36719 | - | - | - | Ro02_G35461,Ro03_G16051,Ro06_G29186 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA133:Ro05_G16066,Ro05_G16064,Ro05_G16061,Ro05_G16059,Ro05_G31132 | AT1G79620||AT5G49760 | leucine-rich repeat transmembrane protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005773|vacuole | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA135:Ro05_G30674,Ro05_G30676,Ro05_G30675,Ro05_G30677,Ro05_G18677 | AT3G01650||AT5G14420||AT1G14430 | RGLG1; RGLG1 (RING domain Ligase1); protein binding / zinc ion binding||glyoxal oxidase-related||RGLG2; RGLG2 (RING domain Ligase2); ubiquitin-protein ligase | GO:0003674|molecular_function;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0006499|N-terminal protein myristoylation;GO:0009850|auxin metabolic process;GO:0008150|biological_process;GO:0004842|ubiquitin-protein ligase activity;GO:0009690|cytokinin metabolic process | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA137:Ro05_G30805,Ro05_G30804,Ro05_G25383,Ro05_G30806,Ro05_G30803 | AT3G17675 | copper ion binding / electron carrier | GO:0009055|electron carrier activity;GO:0005507|copper ion binding | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA138:Ro05_G30819,Ro05_G30820,Ro05_G30812,Ro05_G30813,Ro05_G08592 | AT4G12300 | CYP706A4; CYP706A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0019825|oxygen binding;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA140:Ro05_G31029,Ro05_G31031,Ro05_G31034,Ro05_G31028,Ro05_G31043 | AT1G70840||AT1G70890||AT1G70850 | MLP31; MLP31 (MLP-LIKE PROTEIN 31)||MLP34; MLP34 (MLP-LIKE PROTEIN 34)||MLP43; MLP43 (MLP-LIKE PROTEIN 43) | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0009607|response to biotic stimulus;GO:0006952|defense response;GO:0005575|cellular_component | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA143:Ro05_G31509,Ro05_G31508,Ro05_G31503,Ro05_G31501,Ro05_G31502 | AT3G23600 | dienelactone hydrolase family protein | GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0009651|response to salt stress;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0016787|hydrolase activity | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA144:Ro05_G31625,Ro05_G31621,Ro05_G31623,Ro05_G31624,Ro05_G31622 | AT4G24540||AT2G14210 | AGL24; AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor||ANR1, AGL44; AGL44 (AGAMOUS-LIKE 44); DNA binding / transcription factor | GO:0048527|lateral root development;GO:0042803|protein homodimerization activity;GO:0043565|sequence-specific DNA binding;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0007584|response to nutrient;GO:0005634|nucleus;GO:0048438|floral whorl development;GO:0046982|protein heterodimerization activity;GO:0010582|floral meristem determinacy;GO:0048510|regulation of timing of transition from vegetative to reproductive phase;GO:0010076|maintenance of floral meristem identity | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1463:Ro05_G25059,Ro05_G31218 | AT1G72840 | ATP binding / protein binding / transmembrane receptor | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | Ro02_G34838,Ro03_G32597,Ro05_G30622 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1475:Ro05_G26989,Ro05_G31279 | AT1G09080 | BIP3; BIP3; ATP binding | GO:0006457|protein folding;GO:0005788|endoplasmic reticulum lumen;GO:0009408|response to heat;GO:0005524|ATP binding;GO:0009860|pollen tube growth | Ro01_G29903,Ro05_G31737,Ro07_G33293 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA147:Ro06_G28451,Ro06_G21356,Ro06_G21359,Ro06_G27372,Ro06_G28458 | AT5G40990 | GLIP1; GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase | GO:0016298|lipase activity;GO:0005615|extracellular space;GO:0050832|defense response to fungus;GO:0004091|carboxylesterase activity;GO:0042742|defense response to bacterium;GO:0009866|induced systemic resistance, ethylene mediated signaling pathway;GO:0009751|response to salicylic acid stimulus;GO:0009620|response to fungus | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1493:Ro05_G30669,Ro05_G30670 | - | - | - | Ro02_G34952,Ro02_G35882,Ro02_G36024 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA149:Ro06_G28618,Ro06_G28619,Ro06_G06764,Ro06_G06765,Ro06_G06766 | AT1G05210||AT2G32380 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 102 Blast hits to 102 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32380.1); Has 101 Blast hits to 101 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA153:Ro07_G17531,Ro07_G17530,Ro07_G17529,Ro07_G17523,Ro07_G17517 | AT5G22540||AT2G44930||AT2G28580 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA154:Ro07_G17547,Ro07_G33605,Ro07_G33606,Ro07_G33602,Ro07_G33601 | AT3G23880||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0031348|negative regulation of defense response | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA156:Ro07_G33311,Ro07_G33309,Ro07_G33310,Ro07_G33315,Ro07_G04358 | AT2G22590||AT5G49690||AT1G01390 | transferase, transferring glycosyl groups||UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA157:Ro07_G33442,Ro07_G33444,Ro07_G33443,Ro07_G33435,Ro07_G33434 | AT2G45630||AT1G12550 | oxidoreductase family protein | GO:0005488|binding;GO:0003824|catalytic activity;GO:0048037|cofactor binding;GO:0051287|NAD or NADH binding;GO:0008152|metabolic process;GO:0016616|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1582:Ro06_G08362,Ro06_G08366 | AT4G01850||AT2G36880||AT3G17390 | MAT3; MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase||SAM-2, MAT2; SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); copper ion binding / methionine adenosyltransferase||MTO3, SAMS3, MAT4; MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase | GO:0004478|methionine adenosyltransferase activity;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005618|cell wall;GO:0006556|S-adenosylmethionine biosynthetic process;GO:0009809|lignin biosynthetic process;GO:0006555|methionine metabolic process;GO:0009409|response to cold;GO:0006730|one-carbon metabolic process;GO:0016020|membrane;GO:0005507|copper ion binding | Ro01_G11265,Ro04_G19313,Ro06_G13219 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA158:Ro07_G33472,Ro07_G33473,Ro07_G33471,Ro07_G33470,Ro07_G33475 | AT4G11070||AT4G12010||AT2G46400||AT5G58120 | WRKY46, ATWRKY46; WRKY46; transcription factor||disease resistance protein (TIR-NBS-LRR class), putative||WRKY41, AtWRKY41; WRKY41; transcription factor | GO:0031224|intrinsic to membrane;GO:0010200|response to chitin;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0005730|nucleolus;GO:0017111|nucleoside-triphosphatase activity;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0045087|innate immune response;GO:0005634|nucleus;GO:0006952|defense response;GO:0006355|regulation of transcription, DNA-dependent;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA162:Ro07_G34213,Ro07_G34212,Ro07_G27696,Ro07_G26852,Ro07_G26010 | AT4G15760 | MO1; MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase | GO:0009617|response to bacterium;GO:0016491|oxidoreductase activity;GO:0009055|electron carrier activity;GO:0005783|endoplasmic reticulum | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1643:Ro06_G16839,Ro06_G16841 | AT1G15520 | PDR12, ATPDR12; PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances | GO:0006855|drug transmembrane transport;GO:0015692|lead ion transport;GO:0010193|response to ozone;GO:0046865|terpenoid transport;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0009753|response to jasmonic acid stimulus;GO:0009607|response to biotic stimulus;GO:0009723|response to ethylene stimulus;GO:0009751|response to salicylic acid stimulus | Ro01_G23355,Ro02_G05398,Ro03_G32271 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA165:Ro07_G34323,Ro07_G34325,Ro07_G34326,Ro07_G34327,Ro07_G34330 | AT3G54450 | transporter | GO:0016020|membrane | - | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1718:Ro06_G28379,Ro06_G23603 | AT1G73040 | jacalin lectin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G23618,Ro07_G18565,Ro06_G25821 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA175:Ro01_G29886,Ro01_G08675,Ro01_G08677,Ro01_G08679 | AT1G66380||AT1G56650||AT1G66390 | MYB114, AtMYB114; MYB114 (myb domain protein 114); DNA binding / transcription factor||ATMYB90, PAP2, MYB90; MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor||PAP1, MYB75, SIAA1, ATMYB75; PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor | GO:0019430|removal of superoxide radicals;GO:0009718|anthocyanin biosynthetic process;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0009651|response to salt stress;GO:0009753|response to jasmonic acid stimulus;GO:0045449|regulation of transcription;GO:0046283|anthocyanin metabolic process;GO:0009745|sucrose mediated signaling;GO:0006355|regulation of transcription, DNA-dependent | Ro01_G30094 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA180:Ro02_G09606,Ro02_G09607,Ro02_G35066,Ro02_G35065 | AT3G60080||AT1G26800 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | Ro02_G35023 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1824:Ro07_G14011,Ro07_G14010 | AT5G52640||AT5G56010 | HSP81-3; HSP81-3; ATP binding / unfolded protein binding||HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1; ATHSP90.1 (HEAT SHOCK PROTEIN 90.1); ATP binding / unfolded protein binding | GO:0006457|protein folding;GO:0046685|response to arsenic;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0051082|unfolded protein binding;GO:0009408|response to heat;GO:0042742|defense response to bacterium;GO:0005524|ATP binding;GO:0016020|membrane;GO:0005829|cytosol;GO:0005618|cell wall | Ro02_G35420,Ro03_G14652,Ro05_G11470 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA183:Ro02_G18987,Ro02_G18989,Ro02_G18992,Ro02_G15484 | AT4G16380||AT1G49420 | metal ion binding | GO:0030001|metal ion transport;GO:0005575|cellular_component;GO:0046872|metal ion binding | Ro03_G10167 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA185:Ro02_G34858,Ro02_G02198,Ro02_G02197,Ro02_G02196 | AT5G55170||AT5G48710 | ubiquitin-related||SUM3, SUMO 3, SUMO3, ATSUMO3; SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3); protein binding / protein tag | GO:0016925|protein sumoylation;GO:0005515|protein binding;GO:0031386|protein tag;GO:0006464|protein modification process;GO:0005575|cellular_component | Ro03_G25958 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1934:Ro07_G33850,Ro07_G33857 | - | - | - | Ro03_G33023,Ro05_G30897,Ro07_G34228 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1959:Ro07_G34069,Ro07_G34068 | - | - | - | Ro03_G05870,Ro03_G32974,Ro06_G29324 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1962:Ro07_G34165,Ro07_G34167 | AT5G63480||AT3G07860 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro03_G32340,Ro04_G36807,Ro06_G24320 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA200:Ro03_G17213,Ro03_G17212,Ro03_G17210,Ro03_G17209 | AT3G20420||AT4G28440 | RTL2, ATRTL2; RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III||DNA-binding protein-related | GO:0003674|molecular_function;GO:0006396|RNA processing;GO:0003725|double-stranded RNA binding;GO:0004525|ribonuclease III activity;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm | Ro06_G20134 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA202:Ro03_G31955,Ro03_G31957,Ro03_G31956,Ro03_G31966 | AT1G07440||AT2G29150||AT2G29290||AT5G06060 | tropinone reductase, putative / tropine dehydrogenase, putative | GO:0005488|binding;GO:0046686|response to cadmium ion;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008152|metabolic process;GO:0005575|cellular_component | Ro07_G34544 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA204:Ro03_G32052,Ro03_G32053,Ro03_G32057,Ro03_G32054 | AT4G31940 | CYP82C4; CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro01_G29775 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA217:Ro04_G07208,Ro04_G07207,Ro04_G07205,Ro04_G07204 | AT1G24430||AT3G26040 | transferase family protein||transferase/ transferase, transferring acyl groups other than amino-acyl groups | GO:0016740|transferase activity;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0006499|N-terminal protein myristoylation | Ro05_G21122 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA219:Ro04_G12884,Ro04_G36503,Ro04_G36502,Ro04_G12890 | AT3G23600 | dienelactone hydrolase family protein | GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0009651|response to salt stress;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0016787|hydrolase activity | Ro05_G31174 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA220:Ro04_G13544,Ro04_G13546,Ro04_G13547,Ro04_G13548 | AT3G22910 | calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) | GO:0006816|calcium ion transport;GO:0006754|ATP biosynthetic process;GO:0005516|calmodulin binding;GO:0005388|calcium-transporting ATPase activity;GO:0008152|metabolic process;GO:0006812|cation transport;GO:0016020|membrane | Ro05_G19369 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA221:Ro04_G16691,Ro04_G16687,Ro04_G27110,Ro04_G12440 | AT4G13440 | calcium-binding EF hand family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0005509|calcium ion binding | Ro04_G36982 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA229:Ro04_G36705,Ro04_G25895,Ro04_G36706,Ro04_G25898 | AT2G06050 | OPR3; OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase | GO:0016629|12-oxophytodienoate reductase activity;GO:0010193|response to ozone;GO:0009695|jasmonic acid biosynthetic process;GO:0005777|peroxisome;GO:0009611|response to wounding;GO:0009620|response to fungus | Ro01_G02982 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA231:Ro04_G36918,Ro04_G22427,Ro04_G17263,Ro04_G36936 | AT3G09270||AT2G29420 | ATGSTU7, GST25; ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7); glutathione transferase||ATGSTU8; ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase | GO:0046686|response to cadmium ion;GO:0009407|toxin catabolic process;GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0009751|response to salicylic acid stimulus | Ro07_G34502 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA233:Ro05_G23586,Ro05_G31199,Ro05_G22689,Ro05_G22686 | AT1G53420||AT3G14840 | serine/threonine protein kinase-related||leucine-rich repeat family protein / protein kinase family protein | GO:0004713|protein tyrosine kinase activity;GO:0004674|protein serine/threonine kinase activity;GO:0012505|endomembrane system | Ro05_G30946 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA242:Ro05_G31677,Ro05_G31678,Ro05_G31693,Ro05_G31694 | AT5G04700||AT3G18670 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).||ankyrin repeat family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0005515|protein binding | Ro05_G31431 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA248:Ro06_G14891,Ro06_G14890,Ro06_G14887,Ro06_G14231 | AT2G35980||AT5G06320 | YLS9, NHL10, ATNHL10; YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)||NHL3; NHL3 | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0051707|response to other organism;GO:0005886|plasma membrane;GO:0051607|defense response to virus;GO:0042742|defense response to bacterium;GO:0009617|response to bacterium;GO:0010150|leaf senescence | Ro02_G21992 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA258:Ro06_G29206,Ro06_G29205,Ro06_G29201,Ro06_G29202 | AT5G22860 | serine carboxypeptidase S28 family protein | GO:0008236|serine-type peptidase activity;GO:0006508|proteolysis;GO:0012505|endomembrane system;GO:0008233|peptidase activity | Ro06_G29211 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA259:Ro06_G29220,Ro06_G29225,Ro06_G29223,Ro06_G29222 | AT3G58860||AT1G55660||AT4G00320||AT5G41830 | F-box family protein||F-box family protein-related | GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016020|membrane | Ro04_G19311 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA262:Ro06_G29370,Ro06_G23079,Ro06_G23083,Ro06_G23086 | AT1G20030||AT1G75040||AT1G19320 | PR5, PR-5; PR5 (PATHOGENESIS-RELATED GENE 5)||pathogenesis-related thaumatin family protein | GO:0009627|systemic acquired resistance;GO:0003674|molecular_function;GO:0031225|anchored to membrane;GO:0046686|response to cadmium ion;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0051707|response to other organism;GO:0005618|cell wall;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0010224|response to UV-B;GO:0005773|vacuole | Ro06_G22021 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA290:Ro07_G34774,Ro07_G06866,Ro07_G34770,Ro07_G34772 | AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel | GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | Ro07_G34632 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA295:Ro01_G19805,Ro01_G29711,Ro01_G26393 | AT5G66850||AT3G50530 | CRK; CRK (CDPK-related kinase); ATP binding / calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase/ protein kinase/ protein serine/threonine kinase||MAPKKK5; MAPKKK5; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0004723|calcium-dependent protein serine/threonine phosphatase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005509|calcium ion binding;GO:0005524|ATP binding;GO:0006499|N-terminal protein myristoylation | Ro06_G27551,Ro02_G14995 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA328:Ro02_G15470,Ro02_G15461,Ro02_G15457 | AT2G16430||AT4G36360||AT2G27190||AT1G45130 | PAP10, ATPAP10; PAP10 (PURPLE ACID PHOSPHATASE 10); acid phosphatase/ protein serine/threonine phosphatase||BGAL3; BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding||PAP1, ATPAP1, PAP12, ATPAP12; PAP12 (PURPLE ACID PHOSPHATASE 12); acid phosphatase/ protein serine/threonine phosphatase||BGAL5; BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding | GO:0003993|acid phosphatase activity;GO:0004565|beta-galactosidase activity;GO:0019515|lactose catabolic process via UDP-galactose;GO:0003824|catalytic activity;GO:0019513|lactose catabolic process, using glucoside 3-dehydrogenase;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0009341|beta-galactosidase complex;GO:0008150|biological_process;GO:0009505|plant-type cell wall;GO:0005990|lactose catabolic process;GO:0004722|protein serine/threonine phosphatase activity;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | Ro02_G02304,Ro05_G16785 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA358:Ro02_G35788,Ro02_G35786,Ro02_G35797 | AT4G19500||AT3G51560||AT5G45200||AT4G19520||AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative||ATP binding / protein binding / transmembrane receptor||ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | Ro02_G35512,Ro06_G18365 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA370:Ro03_G06276,Ro03_G06274,Ro03_G06272 | AT5G05580||AT3G11170||AT2G29980 | FAD8; FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase||FAD3; FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase||FAD7, FADD; FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | GO:0009507|chloroplast;GO:0009266|response to temperature stimulus;GO:0042389|omega-3 fatty acid desaturase activity;GO:0005783|endoplasmic reticulum;GO:0006633|fatty acid biosynthetic process;GO:0006636|unsaturated fatty acid biosynthetic process;GO:0009941|chloroplast envelope | Ro06_G05592,Ro07_G34586 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA379:Ro03_G12840,Ro03_G12842,Ro03_G12848 | AT1G07530||AT1G11200||AT2G29060 | SCL14, ATGRAS2, GRAS2; SCL14 (SCARECROW-LIKE 14); transcription factor||unknown protein||scarecrow transcription factor family protein | GO:0043193|positive regulation of gene-specific transcription;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005575|cellular_component;GO:0005829|cytosol;GO:0009410|response to xenobiotic stimulus | Ro05_G24335,Ro05_G31094 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA396:Ro03_G24495,Ro03_G24496,Ro03_G32585 | AT4G26840 | SUM1, SUMO 1, SUMO1, ATSUMO1; SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag | GO:0016925|protein sumoylation;GO:0005515|protein binding;GO:0009408|response to heat;GO:0005634|nucleus;GO:0031386|protein tag;GO:0005737|cytoplasm | Ro02_G19668,Ro06_G06684 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA414:Ro03_G32228,Ro03_G32226,Ro03_G32229 | - | - | - | Ro02_G15903,Ro02_G35869 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA426:Ro03_G32867,Ro03_G32890,Ro03_G32891 | AT4G27290||AT4G27300||AT1G11330 | S-locus protein kinase, putative||S-locus lectin protein kinase family protein||ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0048544|recognition of pollen;GO:0004713|protein tyrosine kinase activity;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro03_G31990,Ro03_G31991 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA428:Ro03_G32969,Ro03_G32971,Ro03_G32970 | AT2G34930||AT4G13920 | AtRLP50; AtRLP50 (Receptor Like Protein 50); kinase/ protein binding||disease resistance family protein | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0006952|defense response;GO:0007165|signal transduction;GO:0005618|cell wall | Ro03_G32962,Ro04_G36471 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA446:Ro04_G13317,Ro04_G36628,Ro04_G36627 | AT5G16140 | peptidyl-tRNA hydrolase family protein | GO:0006412|translation;GO:0004045|aminoacyl-tRNA hydrolase activity | Ro07_G34157,Ro05_G23003 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA477:Ro05_G11769,Ro05_G11770,Ro05_G11771 | AT4G02570 | ATCUL1, CUL1, AXR6; ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding | GO:0009524|phragmoplast;GO:0005819|spindle;GO:0009733|response to auxin stimulus;GO:0042752|regulation of circadian rhythm;GO:0000151|ubiquitin ligase complex;GO:0005515|protein binding;GO:0010265|SCF complex assembly;GO:0000794|condensed nuclear chromosome;GO:0009753|response to jasmonic acid stimulus;GO:0005634|nucleus;GO:0009867|jasmonic acid mediated signaling pathway;GO:0005737|cytoplasm;GO:0007049|cell cycle;GO:0009793|embryonic development ending in seed dormancy | Ro02_G07062,Ro04_G06420 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA530:Ro06_G13631,Ro06_G13634,Ro06_G28334 | AT1G79990||AT1G64520 | RPN12a; RPN12a (Regulatory Particle non-ATPase 12a); peptidase||LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SYS1 homologue (InterPro:IPR016973); Has 55556 Blast hits to 24059 proteins in 620 species: Archae - 38; Bacteria - 5697; Metazoa - 25539; Fungi - 10898; Plants - 5309; Viruses - 0; Other Eukaryotes - 8075 (source: NCBI BLink). | GO:0006511|ubiquitin-dependent protein catabolic process;GO:0048366|leaf development;GO:0009941|chloroplast envelope;GO:0043161|proteasomal ubiquitin-dependent protein catabolic process;GO:0009647|skotomorphogenesis;GO:0008541|proteasome regulatory particle, lid subcomplex;GO:0030163|protein catabolic process;GO:0000139|Golgi membrane;GO:0009733|response to auxin stimulus;GO:0009908|flower development;GO:0009408|response to heat;GO:0005634|nucleus;GO:0008233|peptidase activity;GO:0043248|proteasome assembly;GO:0009735|response to cytokinin stimulus;GO:0048825|cotyledon development;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0051788|response to misfolded protein;GO:0000502|proteasome complex;GO:0048528|post-embryonic root development | Ro01_G07705,Ro01_G29932 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA597:Ro07_G23746,Ro07_G23747,Ro07_G34016 | AT3G50950||AT1G50180 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0006952|defense response | Ro05_G15542,Ro06_G22443 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA602:Ro07_G26434,Ro07_G27311,Ro07_G27312 | AT2G37560 | ORC2, ATORC2; ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2); DNA replication origin binding / protein binding | GO:0003688|DNA replication origin binding;GO:0005515|protein binding;GO:0006260|DNA replication;GO:0000808|origin recognition complex | Ro02_G34904,Ro05_G31159 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA603:Ro07_G27516,Ro07_G33685,Ro07_G33686 | AT3G60160 | ATMRP9; ATMRP9; ATPase, coupled to transmembrane movement of substances | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0016021|integral to membrane;GO:0009624|response to nematode | Ro07_G33430,Ro07_G33432 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA757:Ro01_G29957,Ro01_G29958 | AT1G02390||AT1G06520 | ATGPAT1, GPAT1; GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase||ATGPAT2, GPAT2; GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase | GO:0008415|acyltransferase activity;GO:0048235|pollen sperm cell differentiation;GO:0003841|1-acylglycerol-3-phosphate O-acyltransferase activity;GO:0008152|metabolic process;GO:0005739|mitochondrion;GO:0016020|membrane | Ro05_G30943,Ro04_G36925,Ro04_G36428 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA759:Ro01_G29992,Ro01_G30003 | AT5G59190||AT5G59100||AT3G46850||AT5G58840 | subtilase family protein | GO:0006508|proteolysis;GO:0046686|response to cadmium ion;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0005575|cellular_component;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity | Ro01_G30016,Ro07_G34548,Ro06_G28228 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA760:Ro01_G29993,Ro01_G30002 | AT4G15040||AT5G59190||AT3G46850||AT3G46840 | subtilase family protein||identical protein binding / serine-type endopeptidase | GO:0006508|proteolysis;GO:0046686|response to cadmium ion;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0005575|cellular_component;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity;GO:0006499|N-terminal protein myristoylation | Ro06_G28227,Ro07_G34548,Ro01_G30015 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA959:Ro02_G35679,Ro02_G35684 | - | - | - | Ro01_G29761,Ro02_G21498,Ro04_G21654 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA968:Ro02_G35815,Ro02_G10113 | AT5G03260 | LAC11; LAC11 (laccase 11); laccase | GO:0046274|lignin catabolic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity | Ro01_G01056,Ro03_G32159,Ro03_G17571 | 5 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1106:Ro03_G24394,Ro03_G24396;TA1854:Ro07_G20242,Ro07_G20239 | AT5G62290 | nucleotide-sensitive chloride conductance regulator (ICln) family protein | GO:0005216|ion channel activity;GO:0006821|chloride transport;GO:0006884|cell volume homeostasis;GO:0005575|cellular_component | Ro02_G05393 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1159:Ro03_G32480,Ro03_G32471;TA1315:Ro04_G36573,Ro04_G36580 | AT1G52800 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | GO:0016491|oxidoreductase activity;GO:0005575|cellular_component | Ro03_G32265 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1224:Ro04_G07115,Ro04_G07114;TA1554:Ro06_G03787,Ro06_G03789 | AT5G08391||AT3G48660||AT3G27030||AT5G40980 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0031225|anchored to membrane | Ro05_G01910 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1367:Ro04_G37172,Ro04_G37174;TA1958:Ro07_G34060,Ro07_G34061 | - | - | - | Ro05_G18681 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1650:Ro06_G17688,Ro06_G28106;TA1770:Ro06_G29450,Ro06_G29452 | - | - | - | Ro06_G28202 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1651:Ro06_G18080,Ro06_G28634;TA1933:Ro07_G33790,Ro07_G33791 | - | - | - | Ro04_G37168 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA456:Ro04_G20691,Ro04_G20697,Ro04_G20698;TA1260:Ro04_G20692,Ro04_G20696 | AT5G11180||AT2G29100||AT2G29110 | ATGLR2.8, GLR2.8; ATGLR2.8; intracellular ligand-gated ion channel||ATGLR2.9, GLR2.9; ATGLR2.9; intracellular ligand-gated ion channel||ATGLR2.6, GLR2.6; ATGLR2.6; intracellular ligand-gated ion channel | GO:0005217|intracellular ligand-gated ion channel activity;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006874|cellular calcium ion homeostasis;GO:0009416|response to light stimulus;GO:0016020|membrane | - | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA486:Ro05_G15590,Ro05_G15593,Ro05_G15599;TA1215:Ro04_G03201,Ro04_G03197 | AT5G65380||AT5G52450 | MATE efflux protein-related||ripening-responsive protein, putative | GO:0009835|ripening;GO:0006855|drug transmembrane transport;GO:0009624|response to nematode;GO:0015238|drug transmembrane transporter activity;GO:0005215|transporter activity;GO:0005886|plasma membrane;GO:0015297|antiporter activity;GO:0016020|membrane | - | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA547:Ro06_G28086,Ro06_G28087,Ro06_G25908;TA771:Ro01_G30159,Ro01_G30160 | - | - | - | - | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA627:Ro07_G34661,Ro07_G34662,Ro07_G34663;TA1997:Ro07_G34750,Ro07_G34753 | AT4G16920||AT5G46450||AT5G45260||AT4G16950||AT4G12010 | RRS1, ATWRKY52, SLH1; RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor||disease resistance protein (TIR-NBS-LRR class), putative||RPP5; RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding | GO:0031224|intrinsic to membrane;GO:0009817|defense response to fungus, incompatible interaction;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0008219|cell death;GO:0006952|defense response;GO:0009816|defense response to bacterium, incompatible interaction;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA633:Ro01_G00933,Ro01_G29688;TA1989:Ro07_G34583,Ro07_G34582 | AT5G22540 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G00990 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA765:Ro01_G30036,Ro01_G05344;TA1211:Ro04_G02716,Ro04_G02724 | AT1G70250||AT1G66920||AT1G68400||AT1G25390||AT5G38280 | receptor serine/threonine kinase, putative||PR5K; PR5K; kinase/ transmembrane receptor protein serine/threonine kinase||leucine-rich repeat transmembrane protein kinase, putative||serine/threonine protein kinase, putative||protein kinase family protein | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0009620|response to fungus | Ro05_G30600 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA797:Ro01_G30475,Ro01_G30481;TA1291:Ro04_G27996,Ro04_G37094 | ATCG00780 | RPL14; encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex | GO:0009507|chloroplast | Ro04_G37045 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA886:Ro02_G19615,Ro02_G19614;TA948:Ro02_G35476,Ro02_G35478 | - | - | - | Ro06_G09123 | 5 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1030:Ro03_G10587,Ro03_G33170 | AT3G21690 | MATE efflux family protein | GO:0006855|drug transmembrane transport;GO:0015238|drug transmembrane transporter activity;GO:0005215|transporter activity;GO:0005886|plasma membrane;GO:0015297|antiporter activity;GO:0016020|membrane | Ro06_G06754,Ro03_G10588 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1074:Ro03_G17737,Ro03_G17735 | AT5G60900 | RLK1; RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro07_G09546,Ro03_G32767 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1077:Ro03_G18196,Ro03_G18195 | AT2G21580||AT4G34555 | 40S ribosomal protein S25, putative||40S ribosomal protein S25 (RPS25B) | GO:0006412|translation;GO:0005886|plasma membrane;GO:0022626|cytosolic ribosome;GO:0003735|structural constituent of ribosome;GO:0005840|ribosome;GO:0022627|cytosolic small ribosomal subunit | Ro02_G10093,Ro07_G18094 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1079:Ro03_G18870,Ro03_G32584 | AT1G43760 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40390.1); Has 2614 Blast hits to 2551 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G29320,Ro07_G33407 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1092:Ro03_G20707,Ro03_G08067 | AT2G42520||AT2G44130||AT1G55270 | kelch repeat-containing F-box family protein||DEAD box RNA helicase, putative | GO:0003674|molecular_function;GO:0008026|ATP-dependent helicase activity;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0005777|peroxisome | Ro01_G21058,Ro06_G21845 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1102:Ro03_G23783,Ro03_G32259 | AT4G02550 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G30406,Ro03_G32264 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1120:Ro03_G31751,Ro03_G31755 | - | - | - | Ro04_G36593,Ro06_G24807 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1127:Ro03_G31877,Ro03_G31878 | AT1G27190 | leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0005634|nucleus;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro04_G24954,Ro04_G36235 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1139:Ro03_G32161,Ro03_G14130 | - | - | - | Ro06_G29263,Ro05_G31151 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1182:Ro03_G32926,Ro03_G32922 | AT4G26485 | - | - | Ro02_G34952,Ro02_G36024 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1184:Ro03_G32964,Ro03_G32963 | AT2G34930||AT4G13920 | AtRLP50; AtRLP50 (Receptor Like Protein 50); kinase/ protein binding||disease resistance family protein | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0006952|defense response;GO:0007165|signal transduction;GO:0005618|cell wall | Ro03_G32860,Ro03_G32861 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1240:Ro04_G15357,Ro04_G15361 | AT5G59240||AT3G61670 | 40S ribosomal protein S8 (RPS8B)||unknown protein | GO:0003674|molecular_function;GO:0042254|ribosome biogenesis;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0005886|plasma membrane;GO:0008150|biological_process;GO:0005840|ribosome;GO:0016020|membrane;GO:0022627|cytosolic small ribosomal subunit | Ro04_G15380,Ro07_G18690 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1246:Ro04_G17506,Ro04_G17501 | AT3G50310||AT4G36950 | MAPKKK21; MAPKKK21; ATP binding / protein kinase/ protein serine/threonine kinase||MAPKKK20; MAPKKK20; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro04_G09311,Ro04_G13333 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1256:Ro04_G19568,Ro04_G19566 | AT4G15960||AT4G02340||AT2G26740 | epoxide hydrolase, putative||catalytic/ epoxide hydrolase||ATSEH; ATSEH (Arabidopsis thaliana soluble epoxide hydrolase); epoxide hydrolase | GO:0004301|epoxide hydrolase activity;GO:0009414|response to water deprivation;GO:0009733|response to auxin stimulus;GO:0003824|catalytic activity;GO:0008150|biological_process;GO:0005739|mitochondrion;GO:0005777|peroxisome | Ro02_G07038,Ro06_G15298 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1264:Ro04_G21612,Ro04_G37048 | ATCG00350||ATCG00340 | PSAA; Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome.||PSAB; Encodes the D1 subunit of photosystem I and II reaction centers. | GO:0009507|chloroplast;GO:0016020|membrane;GO:0009579|thylakoid | Ro04_G37083,Ro04_G21406 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1274:Ro04_G23546,Ro04_G23543 | AT2G34400||AT3G58970 | magnesium transporter CorA-like family protein||pentatricopeptide (PPR) repeat-containing protein | GO:0005886|plasma membrane;GO:0046873|metal ion transmembrane transporter activity;GO:0008150|biological_process;GO:0030001|metal ion transport;GO:0015095|magnesium ion transmembrane transporter activity;GO:0005575|cellular_component;GO:0016020|membrane | Ro05_G23212,Ro04_G23545 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1278:Ro04_G24811,Ro04_G12776 | - | - | - | Ro04_G23330,Ro04_G36820 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1332:Ro04_G36768,Ro04_G36769 | - | - | - | Ro04_G37263,Ro07_G27005 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1343:Ro04_G36834,Ro04_G27098 | AT3G48320 | CYP71A21; CYP71A21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0019825|oxygen binding | Ro01_G26173,Ro02_G35435 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1370:Ro04_G37255,Ro04_G37251 | AT1G65810||AT5G54910 | DEAD/DEAH box helicase, putative||tRNA-splicing endonuclease positive effector-related | GO:0008026|ATP-dependent helicase activity;GO:0005730|nucleolus;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro04_G12557,Ro04_G25886 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1373:Ro04_G37276,Ro04_G37277 | - | - | - | Ro04_G37284,Ro05_G15658 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1405:Ro05_G11961,Ro05_G11962 | AT3G14470||AT3G14720||AT2G42880 | disease resistance protein (NBS-LRR class), putative||ATMPK20; ATMPK20; MAP kinase||ATMPK19, MPK19; ATMPK19; MAP kinase | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0004707|MAP kinase activity;GO:0006952|defense response;GO:0007165|signal transduction | Ro03_G32840,Ro06_G09949 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1413:Ro05_G13288,Ro05_G31271 | - | - | - | Ro03_G32321,Ro03_G32389 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1435:Ro05_G19036,Ro05_G19033 | - | - | - | Ro05_G19019,Ro05_G30999 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1436:Ro05_G19309,Ro05_G31609 | AT1G67980 | CCOAMT; CCoAMT; caffeoyl-CoA O-methyltransferase | GO:0009809|lignin biosynthetic process;GO:0005829|cytosol;GO:0042409|caffeoyl-CoA O-methyltransferase activity | Ro03_G32569,Ro04_G36278 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1458:Ro05_G24450,Ro05_G24452 | AT1G60240||AT3G46100 | ATHRS1; ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase||apical meristem formation protein-related | GO:0009507|chloroplast;GO:0004821|histidine-tRNA ligase activity;GO:0003700|transcription factor activity;GO:0006427|histidyl-tRNA aminoacylation;GO:0045449|regulation of transcription;GO:0005739|mitochondrion;GO:0005575|cellular_component | Ro05_G27470,Ro06_G28536 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1465:Ro05_G25626,Ro05_G27746 | AT3G48770 | ATP binding / DNA binding | GO:0003677|DNA binding;GO:0009507|chloroplast;GO:0005524|ATP binding;GO:0008150|biological_process | Ro03_G02047,Ro04_G26386 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1487:Ro05_G30570,Ro05_G30568 | AT4G24000||AT4G23990 | ATCSLG3, CSLG3; ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups||ATCSLG2, CSLG2; ATCSLG2; cellulose synthase/ transferase/ transferase, transferring glycosyl groups | GO:0016740|transferase activity;GO:0016020|membrane;GO:0016757|transferase activity, transferring glycosyl groups;GO:0000271|polysaccharide biosynthetic process;GO:0016759|cellulose synthase activity;GO:0030244|cellulose biosynthetic process | Ro05_G30569,Ro07_G34018 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1491:Ro05_G30620,Ro05_G30618 | AT3G19950||AT5G37250||AT1G74620 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0003700|transcription factor activity | Ro02_G35192,Ro05_G30632 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1494:Ro05_G30694,Ro05_G22857 | AT5G55990||AT5G47100||AT5G24270 | CBL2, ATCBL2; CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding||CBL9; CBL9; calcium ion binding||SOS3, CBL4; SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonine phosphatase | GO:0010107|potassium ion import;GO:0009414|response to water deprivation;GO:0004723|calcium-dependent protein serine/threonine phosphatase activity;GO:0005513|detection of calcium ion;GO:0008287|protein serine/threonine phosphatase complex;GO:0005886|plasma membrane;GO:0022626|cytosolic ribosome;GO:0006499|N-terminal protein myristoylation;GO:0006950|response to stress;GO:0030007|cellular potassium ion homeostasis;GO:0005955|calcineurin complex;GO:0042539|hypotonic salinity response;GO:0005509|calcium ion binding;GO:0005737|cytoplasm;GO:0009705|plant-type vacuole membrane;GO:0016020|membrane;GO:0010118|stomatal movement;GO:0005773|vacuole | Ro05_G16784,Ro05_G30706 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1503:Ro05_G30881,Ro05_G07287 | AT2G34930||AT3G05650 | AtRLP32; AtRLP32 (Receptor Like Protein 32); kinase/ protein binding||disease resistance family protein | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0050832|defense response to fungus;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0005618|cell wall | Ro05_G30893,Ro03_G24132 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1508:Ro05_G30955,Ro05_G30954 | AT1G16260||AT1G16120||AT1G79670 | WAKL1; WAKL1 (wall associated kinase-like 1); kinase||protein kinase family protein||RFO1, WAKL22; RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase | GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0006468|protein amino acid phosphorylation;GO:0009620|response to fungus;GO:0016301|kinase activity;GO:0005618|cell wall | Ro05_G30941,Ro05_G31384 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1606:Ro06_G09971,Ro06_G28524 | AT1G16260||AT1G16130||AT1G79670||AT1G16120 | WAKL2; WAKL2 (wall associated kinase-like 2); kinase||RFO1, WAKL22; RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase||protein kinase family protein||WAKL1; WAKL1 (wall associated kinase-like 1); kinase | GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0006468|protein amino acid phosphorylation;GO:0009620|response to fungus;GO:0016301|kinase activity;GO:0005618|cell wall | Ro05_G31384,Ro06_G14368 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1622:Ro06_G13236,Ro06_G13237 | AT3G53190||AT5G04310||AT3G07010 | pectate lyase family protein | GO:0030570|pectate lyase activity;GO:0031225|anchored to membrane;GO:0016829|lyase activity;GO:0012505|endomembrane system;GO:0008150|biological_process | Ro07_G16591,Ro06_G11293 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA166:Ro01_G03053,Ro01_G03057,Ro01_G03058,Ro01_G03059 | AT3G53690||AT5G10370 | zinc finger (C3HC4-type RING finger) family protein||helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | GO:0009507|chloroplast;GO:0008026|ATP-dependent helicase activity;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0005622|intracellular;GO:0004386|helicase activity;GO:0005524|ATP binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA169:Ro01_G24345,Ro01_G29980,Ro01_G27510,Ro01_G16642 | AT4G15390||AT3G26040||AT1G24420 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1704:Ro06_G28063,Ro06_G03852 | AT5G40780||AT1G24400 | LTH1; LHT1; amino acid transmembrane transporter||LHT2, AATL2; LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter | GO:0006865|amino acid transport;GO:0015172|acidic amino acid transmembrane transporter activity;GO:0005886|plasma membrane;GO:0015171|amino acid transmembrane transporter activity;GO:0043090|amino acid import;GO:0015175|neutral amino acid transmembrane transporter activity;GO:0016020|membrane | Ro04_G36293,Ro05_G01970 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA172:Ro01_G29825,Ro01_G29816,Ro01_G29818,Ro01_G22174 | AT5G10530 | lectin protein kinase, putative | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1732:Ro06_G28491,Ro06_G28490 | AT4G21470||AT4G21520 | ATFMN/FHY; ATFMN/FHY (riboflavin kinase/FMN hydrolase); FMN adenylyltransferase/ riboflavin kinase||transducin family protein / WD-40 repeat family protein | GO:0009231|riboflavin biosynthetic process;GO:0012505|endomembrane system;GO:0008531|riboflavin kinase activity;GO:0008152|metabolic process;GO:0003919|FMN adenylyltransferase activity;GO:0000166|nucleotide binding | Ro03_G06443,Ro03_G33152 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA173:Ro01_G29827,Ro01_G29828,Ro01_G29826,Ro01_G15230 | AT2G22590 | transferase, transferring glycosyl groups | GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1754:Ro06_G28940,Ro06_G28939 | AT5G27060||AT1G45616 | AtRLP53; AtRLP53 (Receptor Like Protein 53); kinase/ protein binding||AtRLP6; AtRLP6 (Receptor Like Protein 6); protein binding | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity;GO:0016020|membrane | Ro04_G36437,Ro06_G28946 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1755:Ro06_G28943,Ro06_G05611 | AT5G01320||AT5G54960 | PDC2; PDC2 (pyruvate decarboxylase-2); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding||pyruvate decarboxylase, putative | GO:0016740|transferase activity;GO:0003824|catalytic activity;GO:0000287|magnesium ion binding;GO:0005575|cellular_component;GO:0004737|pyruvate decarboxylase activity;GO:0030976|thiamin pyrophosphate binding;GO:0016831|carboxy-lyase activity;GO:0001666|response to hypoxia | Ro03_G31920,Ro03_G33106 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1785:Ro07_G06820,Ro07_G06818 | AT5G51460||AT1G35910||AT4G39770||AT4G22590 | trehalose-6-phosphate phosphatase, putative||ATTPPA; ATTPPA; trehalose-phosphatase | GO:0004805|trehalose-phosphatase activity;GO:0009507|chloroplast;GO:0003824|catalytic activity;GO:0008152|metabolic process;GO:0005575|cellular_component;GO:0005992|trehalose biosynthetic process | Ro07_G25408,Ro05_G03462 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1796:Ro07_G08995,Ro07_G08993 | AT3G49010 | ATBBC1, BBC1, RSU2; ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome | GO:0042254|ribosome biogenesis;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0022626|cytosolic ribosome;GO:0003735|structural constituent of ribosome;GO:0006412|translation;GO:0005840|ribosome;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane;GO:0005829|cytosol;GO:0005618|cell wall | Ro01_G11693,Ro05_G15555 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA179:Ro02_G03097,Ro02_G03102,Ro02_G03104,Ro02_G03105 | AT1G33540 | scpl18; scpl18 (serine carboxypeptidase-like 18); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0012505|endomembrane system | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA181:Ro02_G16401,Ro02_G16402,Ro02_G16404,Ro02_G16405 | AT2G15695||AT5G42700||AT3G19184 | transcriptional factor B3 family protein||unknown protein||DNA binding | GO:0003674|molecular_function;GO:0003677|DNA binding;GO:0008150|biological_process;GO:0006355|regulation of transcription, DNA-dependent;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA182:Ro02_G16557,Ro02_G16555,Ro02_G16553,Ro02_G16549 | AT5G42650 | AOS, CYP74A, DDE2; AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding | GO:0009941|chloroplast envelope;GO:0016020|membrane;GO:0009579|thylakoid | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA184:Ro02_G24682,Ro02_G24681,Ro02_G24680,Ro02_G24678 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA186:Ro02_G35032,Ro02_G35033,Ro02_G01399,Ro02_G35034 | AT4G12560 | F-box family protein | GO:0005737|cytoplasm;GO:0003674|molecular_function;GO:0005634|nucleus;GO:0031348|negative regulation of defense response | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA187:Ro02_G35055,Ro02_G35057,Ro02_G35058,Ro02_G35056 | AT5G23660||AT2G39060 | nodulin MtN3 family protein||MTN3; MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) | GO:0008150|biological_process;GO:0016021|integral to membrane;GO:0012505|endomembrane system;GO:0016020|membrane | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA188:Ro02_G35177,Ro02_G35174,Ro02_G35175,Ro02_G35172 | AT3G26880||AT3G55252||AT3G16970||AT4G16295 | LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55254.1); Has 81 Blast hits to 78 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||self-incompatibility protein-related||SPH1; SPH1 (S-PROTEIN HOMOLOGUE 1) | GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0009875|pollen-pistil interaction;GO:0008150|biological_process;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1894:Ro07_G26007,Ro07_G26006 | AT5G07010 | ATST2A, ST2A; ST2A (SULFOTRANSFERASE 2A); hydroxyjasmonate sulfotransferase/ sulfotransferase | GO:0009694|jasmonic acid metabolic process;GO:0005575|cellular_component;GO:0008146|sulfotransferase activity;GO:0009753|response to jasmonic acid stimulus | Ro02_G14981,Ro07_G24015 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA189:Ro02_G35265,Ro02_G26457,Ro02_G26455,Ro02_G35277 | AT1G12740||AT1G73340 | electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP87A2; CYP87A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA192:Ro02_G35757,Ro02_G35761,Ro02_G35759,Ro02_G35758 | AT1G62680||AT1G12700 | LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 26421 Blast hits to 6237 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 845; Fungi - 755; Plants - 23373; Viruses - 0; Other Eukaryotes - 1421 (source: NCBI BLink).||helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein | GO:0009507|chloroplast;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0005524|ATP binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA193:Ro02_G35766,Ro02_G35767,Ro02_G35784,Ro02_G35785 | AT5G23960 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase | GO:0051762|sesquiterpene biosynthetic process;GO:0016106|sesquiterpenoid biosynthetic process;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA194:Ro02_G35852,Ro02_G24090,Ro02_G35893,Ro02_G35891 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA195:Ro02_G36006,Ro02_G36007,Ro02_G15907,Ro02_G36016 | AT1G28420||AT2G14825||AT1G63870 | ||disease resistance protein (TIR-NBS-LRR class), putative||HB-1; HB-1 (homeobox-1); transcription factor | ;GO:0009507|chloroplast;GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0045087|innate immune response;GO:0005634|nucleus;GO:0006952|defense response;GO:0006355|regulation of transcription, DNA-dependent;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1969:Ro07_G34317,Ro07_G34318 | AT5G64140 | RPS28; RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome | GO:0042254|ribosome biogenesis;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0005840|ribosome;GO:0022627|cytosolic small ribosomal subunit | Ro05_G30525,Ro06_G25227 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1974:Ro07_G34380,Ro07_G13020 | - | - | - | Ro06_G29424,Ro07_G34392 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA197:Ro03_G15786,Ro03_G15787,Ro03_G15791,Ro03_G15792 | AT2G34840||AT1G22860||AT4G20900 | coatomer protein epsilon subunit family protein / COPE family protein||unknown protein||MS5, TDM1; MS5 (MALE-STERILE 5) | GO:0030126|COPI vesicle coat;GO:0005488|binding;GO:0003674|molecular_function;GO:0005515|protein binding;GO:0006890|retrograde vesicle-mediated transport, Golgi to ER;GO:0005198|structural molecule activity;GO:0008565|protein transporter activity;GO:0008150|biological_process;GO:0005634|nucleus;GO:0009556|microsporogenesis;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA198:Ro03_G16007,Ro03_G32748,Ro03_G25244,Ro03_G25248 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA199:Ro03_G16395,Ro03_G16394,Ro03_G07501,Ro03_G32048 | AT4G15060||AT1G78760||AT5G56440 | F-box protein-related||F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA203:Ro03_G32026,Ro03_G32046,Ro03_G02140,Ro03_G02146 | AT3G45680||AT3G45660||AT3G45650 | proton-dependent oligopeptide transport (POT) family protein||NAXT1; NAXT1 (NITRATE EXCRETION TRANSPORTER1); nitrate efflux transmembrane transporter/ transporter | GO:0009624|response to nematode;GO:0016020|membrane;GO:0010542|nitrate efflux transmembrane transporter activity;GO:0005886|plasma membrane;GO:0010447|response to acidity;GO:0015706|nitrate transport;GO:0005215|transporter activity;GO:0006857|oligopeptide transport | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA205:Ro03_G32097,Ro03_G32095,Ro03_G07466,Ro03_G32096 | AT3G47150||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA206:Ro03_G32445,Ro03_G32446,Ro03_G32444,Ro03_G32427 | AT3G51680 | short-chain dehydrogenase/reductase (SDR) family protein | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008152|metabolic process;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA207:Ro03_G32606,Ro03_G32605,Ro03_G16632,Ro03_G16633 | AT3G23880||AT3G07870||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA208:Ro03_G32624,Ro03_G32623,Ro03_G32622,Ro03_G26798 | AT1G32120||AT1G50830 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0016020|membrane | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA211:Ro03_G32898,Ro03_G32897,Ro03_G32845,Ro03_G32847 | AT1G65910||AT5G39610||AT1G76420 | ATNAC2, ORE1, ANAC092, ATNAC6; ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor||anac028; anac028 (Arabidopsis NAC domain containing protein 28); transcription factor||CUC3, NAC368, ANAC031; CUC3 (CUP SHAPED COTYLEDON3); transcription factor | GO:0010149|senescence;GO:0006979|response to oxidative stress;GO:0042803|protein homodimerization activity;GO:0003700|transcription factor activity;GO:0010199|organ boundary specification between lateral organs and the meristem;GO:0007275|multicellular organismal development;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0010014|meristem initiation;GO:0005575|cellular_component;GO:0010150|leaf senescence | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA215:Ro03_G33223,Ro03_G33222,Ro03_G33220,Ro03_G33224 | AT4G27280 | calcium-binding EF hand family protein | GO:0005509|calcium ion binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA223:Ro04_G22810,Ro04_G36927,Ro04_G36928,Ro04_G36929 | AT3G24050||AT4G34680 | GATA transcription factor 1 (GATA-1)||GATA transcription factor 3, putative (GATA-3) | GO:0005730|nucleolus;GO:0005634|nucleus;GO:0007623|circadian rhythm;GO:0003700|transcription factor activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA224:Ro04_G27356,Ro04_G27354,Ro04_G27353,Ro04_G23547 | AT4G25980||AT1G77100 | cationic peroxidase, putative||peroxidase, putative | GO:0006979|response to oxidative stress;GO:0004601|peroxidase activity;GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA225:Ro04_G27793,Ro04_G26476,Ro04_G26477,Ro04_G26480 | AT4G30380 | EXLB2; EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA227:Ro04_G36519,Ro04_G18028,Ro04_G18026,Ro04_G36520 | AT3G48880 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA228:Ro04_G36561,Ro04_G21436,Ro04_G36562,Ro04_G36579 | AT1G53550||AT3G07870 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA232:Ro05_G17805,Ro05_G31517,Ro05_G17802,Ro05_G17798 | AT1G76690 | OPR2, ATOPR2; OPR2 | GO:0005575|cellular_component;GO:0016629|12-oxophytodienoate reductase activity;GO:0009611|response to wounding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA234:Ro05_G23590,Ro05_G23593,Ro05_G22688,Ro05_G22682 | AT3G50950 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0006952|defense response | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA235:Ro05_G30628,Ro05_G30630,Ro05_G30629,Ro05_G30631 | AT5G50400 | ATPAP27, PAP27; PAP27 (PURPLE ACID PHOSPHATASE 27); acid phosphatase/ protein serine/threonine phosphatase | GO:0008150|biological_process;GO:0003993|acid phosphatase activity;GO:0012505|endomembrane system;GO:0004722|protein serine/threonine phosphatase activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA237:Ro05_G30753,Ro05_G30750,Ro05_G30752,Ro05_G30751 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA239:Ro05_G30823,Ro05_G30825,Ro05_G30824,Ro05_G30822 | AT1G12200||AT1G62600 | flavin-containing monooxygenase family protein / FMO family protein | GO:0004499|flavin-containing monooxygenase activity;GO:0050661|NADP or NADPH binding;GO:0050660|FAD binding;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0005773|vacuole | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA244:Ro06_G08213,Ro06_G08212,Ro06_G28802,Ro06_G08210 | AT1G54520 | unknown protein | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0008150|biological_process | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA245:Ro06_G09901,Ro06_G28970,Ro06_G09902,Ro06_G09903 | AT2G29360||AT2G29340 | tropinone reductase, putative / tropine dehydrogenase, putative||short-chain dehydrogenase/reductase (SDR) family protein | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008152|metabolic process;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA246:Ro06_G09997,Ro06_G28517,Ro06_G28516,Ro06_G13350 | AT5G52600||AT3G13540||AT5G66980||AT5G45500 | transcriptional factor B3 family protein||ATMYB5; ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor||unknown protein||AtMYB82; AtMYB82 (myb domain protein 82); DNA binding / transcription factor | GO:0010090|trichome morphogenesis;GO:0003674|molecular_function;GO:0010214|seed coat development;GO:0048354|mucilage biosynthetic process during seed coat development;GO:0003677|DNA binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0008150|biological_process;GO:0010468|regulation of gene expression;GO:0005575|cellular_component;GO:0010026|trichome differentiation;GO:0006355|regulation of transcription, DNA-dependent;GO:0009845|seed germination | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA247:Ro06_G13644,Ro06_G13647,Ro06_G13649,Ro06_G28323 | AT3G16010 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA250:Ro06_G24465,Ro06_G29145,Ro06_G29146,Ro06_G24466 | AT2G35980||AT3G11660 | NHL1; NHL1||YLS9, NHL10, ATNHL10; YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0051707|response to other organism;GO:0051607|defense response to virus;GO:0010150|leaf senescence | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA251:Ro06_G28570,Ro06_G28567,Ro06_G28569,Ro06_G28566 | AT2G04350 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) | GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA253:Ro06_G28779,Ro06_G28778,Ro06_G11340,Ro06_G11339 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA254:Ro06_G28808,Ro06_G28810,Ro06_G28809,Ro06_G28807 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA255:Ro06_G29029,Ro06_G29033,Ro06_G29037,Ro06_G11602 | AT3G14470||AT3G50950 | disease resistance protein (NBS-LRR class), putative||disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA256:Ro06_G29056,Ro06_G29058,Ro06_G29059,Ro06_G29057 | AT2G36970 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0012505|endomembrane system;GO:0016757|transferase activity, transferring glycosyl groups | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA260:Ro06_G29285,Ro06_G29284,Ro06_G29294,Ro06_G29293 | AT5G06860 | PGIP1, ATPGIP1; PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding | GO:0005515|protein binding;GO:0006952|defense response;GO:0009505|plant-type cell wall;GO:0007165|signal transduction;GO:0005618|cell wall | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA263:Ro07_G04365,Ro07_G33301,Ro07_G33302,Ro07_G33303 | AT4G01320 | ATSTE24, STE24; ATSTE24; endopeptidase/ metalloendopeptidase | GO:0005783|endoplasmic reticulum;GO:0006508|proteolysis;GO:0005773|vacuole | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA264:Ro07_G04404,Ro07_G04403,Ro07_G33297,Ro07_G04400 | AT2G46230 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26530.1); Has 493 Blast hits to 493 proteins in 165 species: Archae - 21; Bacteria - 0; Metazoa - 192; Fungi - 143; Plants - 53; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA268:Ro07_G20433,Ro07_G33251,Ro07_G20427,Ro07_G20425 | AT4G35580||AT1G33060||AT1G54330 | ANAC020; ANAC020 (Arabidopsis NAC domain containing protein 20); transcription factor||NTL9; NTL9 (NAC transcription factor-like 9); transcription factor||ANAC014; no apical meristem (NAM) family protein | GO:0045449|regulation of transcription;GO:0005575|cellular_component;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA271:Ro07_G21662,Ro07_G21663,Ro07_G21664,Ro07_G21665 | AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel | GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA272:Ro07_G22622,Ro07_G27724,Ro07_G34180,Ro07_G34181 | - | - | - | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA273:Ro07_G23458,Ro07_G23463,Ro07_G33515,Ro07_G18723 | AT3G60660 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA274:Ro07_G25431,Ro07_G34263,Ro07_G25643,Ro07_G25645 | AT5G37380 | DNAJ heat shock N-terminal domain-containing protein | GO:0006457|protein folding;GO:0051082|unfolded protein binding;GO:0031072|heat shock protein binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA281:Ro07_G33713,Ro07_G33717,Ro07_G33716,Ro07_G33714 | AT5G46270||AT4G08450||AT4G16890||AT2G17050 | disease resistance protein (TIR-NBS-LRR class), putative||SNC1, BAL; SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding||ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor | GO:0031224|intrinsic to membrane;GO:0009733|response to auxin stimulus;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0006952|defense response;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0009816|defense response to bacterium, incompatible interaction;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA284:Ro07_G34225,Ro07_G24537,Ro07_G34226,Ro07_G34231 | AT1G53440||AT5G38240 | serine/threonine protein kinase, putative||leucine-rich repeat family protein / protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA285:Ro07_G34235,Ro07_G34234,Ro07_G34237,Ro07_G22199 | AT5G07900||AT1G62120 | mitochondrial transcription termination factor-related / mTERF-related||mitochondrial transcription termination factor family protein / mTERF family protein | GO:0005739|mitochondrion;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0016020|membrane | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA286:Ro07_G34272,Ro07_G34271,Ro07_G34273,Ro07_G34274 | AT5G07900 | mitochondrial transcription termination factor family protein / mTERF family protein | GO:0016020|membrane | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA289:Ro07_G34647,Ro07_G34650,Ro07_G34648,Ro07_G34646 | AT2G18193||AT3G50940 | AAA-type ATPase family protein | GO:0000166|nucleotide binding;GO:0016887|ATPase activity;GO:0012505|endomembrane system;GO:0005524|ATP binding;GO:0017111|nucleoside-triphosphatase activity | - | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA292:Ro01_G10766,Ro01_G04124,Ro01_G04127 | AT5G67150 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | Ro01_G20679 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA305:Ro01_G29836,Ro01_G29846,Ro01_G12271 | AT5G10530 | lectin protein kinase, putative | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | Ro01_G29920 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA307:Ro01_G29970,Ro01_G29976,Ro01_G29971 | AT3G47570||AT5G20480||AT3G47090||AT3G47110 | leucine-rich repeat transmembrane protein kinase, putative||EFR; EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0002764|immune response-regulating signaling pathway;GO:0005886|plasma membrane;GO:0019199|transmembrane receptor protein kinase activity;GO:0012505|endomembrane system;GO:0009626|plant-type hypersensitive response;GO:0016045|detection of bacterium;GO:0006468|protein amino acid phosphorylation;GO:0010204|defense response signaling pathway, resistance gene-independent;GO:0005524|ATP binding | Ro07_G34569 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA318:Ro02_G01543,Ro02_G01541,Ro02_G01540 | AT5G25250||AT5G64870 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25250.1); Has 3110 Blast hits to 2534 proteins in 575 species: Archae - 10; Bacteria - 1084; Metazoa - 749; Fungi - 138; Plants - 89; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25260.1); Has 4072 Blast hits to 3210 proteins in 656 species: Archae - 10; Bacteria - 1411; Metazoa - 994; Fungi - 195; Plants - 102; Viruses - 10; Other Eukaryotes - 1350 (source: NCBI BLink). | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0005773|vacuole | Ro05_G11783 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA331:Ro02_G18447,Ro02_G35737,Ro02_G35736 | AT2G21300 | kinesin motor family protein | GO:0005886|plasma membrane;GO:0005524|ATP binding;GO:0007018|microtubule-based movement;GO:0003777|microtubule motor activity | Ro02_G23040 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA334:Ro02_G19391,Ro02_G35297,Ro02_G22743 | AT5G08420 | RNA binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding | Ro07_G23203 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA339:Ro02_G21878,Ro02_G21876,Ro02_G21873 | AT4G34880 | amidase family protein | GO:0019256|acrylonitrile catabolic process;GO:0016884|carbon-nitrogen ligase activity, with glutamine as amido-N-donor;GO:0012505|endomembrane system;GO:0019330|aldoxime metabolic process;GO:0004040|amidase activity | Ro04_G36937 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA343:Ro02_G34899,Ro02_G34903,Ro02_G34901 | AT2G26560 | PLP2, PLA IIA, PLA2A; PLA2A (PHOSPHOLIPASE A 2A); lipase/ nutrient reservoir | GO:0045735|nutrient reservoir activity;GO:0046686|response to cadmium ion;GO:0006629|lipid metabolic process;GO:0016298|lipase activity;GO:0051607|defense response to virus;GO:0031408|oxylipin biosynthetic process;GO:0009626|plant-type hypersensitive response;GO:0005737|cytoplasm;GO:0008219|cell death;GO:0016020|membrane | Ro02_G35139 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA346:Ro02_G35037,Ro02_G35036,Ro02_G01389 | AT1G37140 | MCT1; MCT1 (mei2 C-Terminal RRM only like 1); RNA binding | GO:0008150|biological_process;GO:0003723|RNA binding | Ro04_G36542 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA347:Ro02_G35086,Ro02_G35080,Ro02_G35084 | - | - | - | Ro05_G31091 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA348:Ro02_G35121,Ro02_G35128,Ro02_G35127 | AT4G10490||AT4G16330||AT4G10500||AT2G44800 | oxidoreductase, 2OG-Fe(II) oxygenase family protein||oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | GO:0009813|flavonoid biosynthetic process;GO:0016491|oxidoreductase activity;GO:0019748|secondary metabolic process;GO:0008150|biological_process;GO:0016706|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0005575|cellular_component;GO:0005777|peroxisome | Ro02_G35129 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA352:Ro02_G35390,Ro02_G35392,Ro02_G35393 | AT1G25280||AT1G43640||AT1G76900 | AtTLP1; AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor||AtTLP5; AtTLP5 (TUBBY LIKE PROTEIN 5); phosphoric diester hydrolase/ transcription factor||AtTLP10; AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor | GO:0008081|phosphoric diester hydrolase activity;GO:0005886|plasma membrane;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0005575|cellular_component | Ro05_G13369 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA360:Ro02_G35817,Ro02_G35816,Ro02_G10108 | AT4G39230||AT4G34540 | isoflavone reductase, putative||isoflavone reductase family protein | GO:0010283|pinoresinol reductase activity;GO:0046686|response to cadmium ion;GO:0032442|phenylcoumaran benzylic ether reductase activity;GO:0008152|metabolic process;GO:0005575|cellular_component;GO:0006808|regulation of nitrogen utilization | Ro02_G34825 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA366:Ro02_G36055,Ro02_G36072,Ro02_G36073 | AT3G12580 | HSP70; HSP70 (heat shock protein 70); ATP binding | GO:0006457|protein folding;GO:0009644|response to high light intensity;GO:0046686|response to cadmium ion;GO:0009615|response to virus;GO:0005886|plasma membrane;GO:0042542|response to hydrogen peroxide;GO:0009408|response to heat;GO:0009617|response to bacterium;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0005829|cytosol;GO:0005618|cell wall | Ro06_G29008 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA368:Ro03_G04933,Ro03_G04937,Ro03_G04938 | AT4G02570 | ATCUL1, CUL1, AXR6; ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding | GO:0009524|phragmoplast;GO:0005819|spindle;GO:0009733|response to auxin stimulus;GO:0042752|regulation of circadian rhythm;GO:0000151|ubiquitin ligase complex;GO:0005515|protein binding;GO:0010265|SCF complex assembly;GO:0000794|condensed nuclear chromosome;GO:0009753|response to jasmonic acid stimulus;GO:0005634|nucleus;GO:0009867|jasmonic acid mediated signaling pathway;GO:0005737|cytoplasm;GO:0007049|cell cycle;GO:0009793|embryonic development ending in seed dormancy | Ro02_G07062 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA369:Ro03_G05203,Ro03_G05200,Ro03_G05196 | AT2G29120 | ATGLR2.7, GLR2.7; ATGLR2.7; intracellular ligand-gated ion channel | GO:0005217|intracellular ligand-gated ion channel activity;GO:0009416|response to light stimulus;GO:0006874|cellular calcium ion homeostasis;GO:0005773|vacuole | Ro03_G05950 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA371:Ro03_G06473,Ro03_G06471,Ro03_G06469 | - | - | - | Ro04_G26828 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA377:Ro03_G11150,Ro03_G11153,Ro03_G11154 | AT5G05160||AT5G27060||AT2G32660||AT5G45800 | AtRLP53; AtRLP53 (Receptor Like Protein 53); kinase/ protein binding||leucine-rich repeat transmembrane protein kinase, putative||AtRLP22; AtRLP22 (Receptor Like Protein 22); kinase/ protein binding||MEE62; MEE62 (maternal effect embryo arrest 62); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006952|defense response;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0009793|embryonic development ending in seed dormancy;GO:0005618|cell wall | Ro04_G08539 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA380:Ro03_G12860,Ro03_G31962,Ro03_G12866 | AT4G01780||AT3G12550||AT3G48670 | XH/XS domain-containing protein / XS zinc finger domain-containing protein||XH/XS domain-containing protein | GO:0003674|molecular_function;GO:0046686|response to cadmium ion;GO:0008150|biological_process;GO:0006342|chromatin silencing;GO:0006306|DNA methylation;GO:0005575|cellular_component | Ro03_G31961 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA388:Ro03_G18612,Ro03_G18613,Ro03_G08704 | AT4G19190 | zinc knuckle (CCHC-type) family protein | GO:0008150|biological_process;GO:0008270|zinc ion binding;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | Ro02_G10445 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA392:Ro03_G20490,Ro03_G20494,Ro03_G27282 | AT4G10650 | GTP binding | GO:0005622|intracellular | Ro07_G06576 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA393:Ro03_G21239,Ro03_G32331,Ro03_G27590 | - | - | - | Ro05_G31290 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA394:Ro03_G21431,Ro03_G31804,Ro03_G14698 | - | - | - | Ro04_G36639 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA395:Ro03_G21976,Ro03_G21977,Ro03_G21982 | AT5G48220 | indole-3-glycerol phosphate synthase, putative | GO:0009507|chloroplast;GO:0003824|catalytic activity;GO:0009570|chloroplast stroma;GO:0004425|indole-3-glycerol-phosphate synthase activity;GO:0006568|tryptophan metabolic process;GO:0008152|metabolic process | Ro06_G25873 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA397:Ro03_G24837,Ro03_G24838,Ro03_G15343 | AT4G05460 | F-box family protein (FBL20) | GO:0009507|chloroplast;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0004842|ubiquitin-protein ligase activity | Ro03_G33079 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA400:Ro03_G27254,Ro03_G32382,Ro03_G32383 | AT3G02370 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G29359 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA403:Ro03_G31780,Ro03_G31782,Ro03_G31784 | AT2G44480||AT5G42260 | BGLU17; BGLU17 (BETA GLUCOSIDASE 17); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds||BGLU12; BGLU12 (BETA GLUCOSIDASE 12); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | Ro06_G28653 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA411:Ro03_G32124,Ro03_G32128,Ro03_G06039 | AT3G26210||AT3G26300||AT3G13110 | CYP71B23; CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M; ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransferase||CYP71B34; CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0046686|response to cadmium ion;GO:0005506|iron ion binding;GO:0008270|zinc ion binding;GO:0012505|endomembrane system;GO:0019344|cysteine biosynthetic process;GO:0009001|serine O-acetyltransferase activity;GO:0019825|oxygen binding;GO:0005739|mitochondrion;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro03_G32555 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA413:Ro03_G32177,Ro03_G32240,Ro03_G21745 | AT3G53480||AT4G15236 | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding||PDR9, ATPDR9, ABCG37; PDR9 (PLEIOTROPIC DRUG RESISTANCE 9); ATPase, coupled to transmembrane movement of substances | GO:0006855|drug transmembrane transport;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0016887|ATPase activity;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016020|membrane | Ro06_G28014 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA422:Ro03_G32638,Ro03_G32642,Ro03_G32643 | AT3G25810||AT5G23960 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase||myrcene/ocimene synthase, putative | GO:0009536|plastid;GO:0034002|(R)-limonene synthase activity;GO:0010334|sesquiterpene synthase activity;GO:0050551|myrcene synthase activity;GO:0005515|protein binding;GO:0051762|sesquiterpene biosynthetic process;GO:0043693|monoterpene biosynthetic process;GO:0016106|sesquiterpenoid biosynthetic process;GO:0050550|pinene synthase activity;GO:0005575|cellular_component;GO:0050552|(4S)-limonene synthase activity | Ro03_G32637 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA424:Ro03_G32680,Ro03_G32679,Ro03_G32678 | AT3G14490||AT5G23960 | ATTPS21, TPS21; TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase||terpene synthase/cyclase family protein | GO:0009507|chloroplast;GO:0016829|lyase activity;GO:0000287|magnesium ion binding;GO:0016106|sesquiterpenoid biosynthetic process;GO:0008152|metabolic process;GO:0051762|sesquiterpene biosynthetic process;GO:0005575|cellular_component | Ro03_G32704 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA450:Ro04_G17013,Ro04_G36827,Ro04_G17017 | AT3G13080 | ATMRP3, MRP3; ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase | GO:0010290|chlorophyll catabolite transmembrane transporter activity;GO:0000325|plant-type vacuole;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0006810|transport;GO:0015431|glutathione S-conjugate-exporting ATPase activity;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005774|vacuolar membrane | Ro04_G36770 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA478:Ro05_G11833,Ro05_G30858,Ro05_G07224 | AT3G02340||AT5G37230 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0003700|transcription factor activity | Ro05_G30854 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA479:Ro05_G12564,Ro05_G31478,Ro05_G26694 | AT3G20230 | 50S ribosomal protein L18 family | GO:0009507|chloroplast;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0005622|intracellular;GO:0005840|ribosome | Ro07_G25520 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA481:Ro05_G12970,Ro05_G12968,Ro05_G12967 | - | - | - | Ro03_G31862 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA487:Ro05_G18679,Ro05_G30672,Ro05_G26552 | AT3G26200||AT1G13080||AT3G48280 | CYP71A25; CYP71A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B22; CYP71B22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B2; CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0010286|heat acclimation;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro05_G30646 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA488:Ro05_G21771,Ro05_G21774,Ro05_G21776 | AT4G24430||AT1G09890 | lyase | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0016829|lyase activity;GO:0005575|cellular_component | Ro05_G15650 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA490:Ro05_G22876,Ro05_G22880,Ro05_G22549 | AT5G62050||AT5G53110 | OXA1, ATOXA1, OXA1AT; OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 118 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity;GO:0005743|mitochondrial inner membrane;GO:0006461|protein complex assembly;GO:0012505|endomembrane system;GO:0005739|mitochondrion;GO:0045039|protein import into mitochondrial inner membrane | Ro04_G11587 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA492:Ro05_G25935,Ro05_G31664,Ro05_G31663 | AT5G09360||AT5G48100 | LAC14; LAC14 (laccase 14); laccase||TT10, LAC15, ATLAC15; TT10 (TRANSPARENT TESTA 10); copper ion binding / laccase | GO:0046274|lignin catabolic process;GO:0009813|flavonoid biosynthetic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity;GO:0046688|response to copper ion;GO:0009809|lignin biosynthetic process;GO:0005507|copper ion binding | Ro05_G24574 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA505:Ro05_G31358,Ro05_G17351,Ro05_G17354 | AT3G02010||AT3G24000 | INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 15874 Blast hits to 5333 proteins in 187 species: Archae - 1; Bacteria - 6; Metazoa - 100; Fungi - 81; Plants - 15349; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).||pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process | Ro07_G09562 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA508:Ro05_G31497,Ro05_G31500,Ro05_G31498 | AT5G36110||AT5G36140 | CYP716A2; CYP716A2; electron carrier/ heme binding / iron ion binding / monooxygenase||CYP716A1; CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro05_G30499 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA512:Ro05_G31648,Ro05_G31647,Ro05_G31645 | AT5G17680||AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | Ro05_G31733 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA520:Ro06_G08516,Ro06_G20894,Ro06_G29303 | AT1G24140||AT1G70170 | matrixin family protein||MMP; MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase | GO:0006508|proteolysis;GO:0008152|metabolic process;GO:0031225|anchored to membrane | Ro06_G09712 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA524:Ro06_G11594,Ro06_G11595,Ro06_G29032 | AT4G19840 | ATPP2-A1, ATPP2A-1, PP2-A1; ATPP2-A1; carbohydrate binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0030246|carbohydrate binding | Ro03_G10853 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA533:Ro06_G16619,Ro06_G16617,Ro06_G16616 | AT5G11470||AT1G15490 | hydrolase, alpha/beta fold family protein||DNA binding / nucleic acid binding | GO:0003677|DNA binding;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016787|hydrolase activity | Ro06_G26561 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA540:Ro06_G24667,Ro06_G29104,Ro06_G29103 | AT5G03610||AT5G03600 | GDSL-motif lipase/hydrolase family protein | GO:0016788|hydrolase activity, acting on ester bonds;GO:0012505|endomembrane system;GO:0004091|carboxylesterase activity;GO:0006629|lipid metabolic process | Ro02_G35187 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA542:Ro06_G25480,Ro06_G25479,Ro06_G25473 | AT4G35160 | O-methyltransferase family 2 protein | GO:0008171|O-methyltransferase activity;GO:0046983|protein dimerization activity;GO:0005829|cytosol;GO:0008168|methyltransferase activity | Ro04_G36445 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA546:Ro06_G28027,Ro06_G28026,Ro06_G28028 | AT5G66900||AT5G66910 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | Ro07_G33802 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA552:Ro06_G28527,Ro06_G09940,Ro06_G09944 | AT3G23730||AT4G14130 | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative||XTR7; XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase | GO:0006073|cellular glucan metabolic process;GO:0016762|xyloglucan:xyloglucosyl transferase activity;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0016798|hydrolase activity, acting on glycosyl bonds;GO:0006499|N-terminal protein myristoylation;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | Ro04_G21379 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA557:Ro06_G28675,Ro06_G18342,Ro06_G18347 | AT5G39410 | binding / catalytic | GO:0005488|binding;GO:0003824|catalytic activity;GO:0009941|chloroplast envelope;GO:0005886|plasma membrane;GO:0008152|metabolic process;GO:0005739|mitochondrion;GO:0016020|membrane;GO:0005773|vacuole | Ro06_G18338 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA610:Ro07_G33522,Ro07_G33527,Ro07_G33526 | AT2G46440||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC11, CNGC11; ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane;GO:0009620|response to fungus | Ro01_G30104 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA616:Ro07_G33819,Ro07_G33821,Ro07_G33823 | AT3G09270||AT2G29490 | ATGSTU1, GST19; ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1); glutathione transferase||ATGSTU8; ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase | GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0009407|toxin catabolic process;GO:0046686|response to cadmium ion | Ro07_G33801 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA623:Ro07_G34255,Ro07_G12727,Ro07_G12724 | - | - | - | Ro03_G31980 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA628:Ro07_G34716,Ro07_G34715,Ro07_G34714 | AT1G64940||AT1G64950||AT5G23880 | CYP89A5; CYP89A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP89A6; CYP89A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||EMB1265, CPSF100, ESP5, ATCPSF100; CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding | GO:0005847|mRNA cleavage and polyadenylation specificity factor complex;GO:0005506|iron ion binding;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0006378|mRNA polyadenylation;GO:0012505|endomembrane system;GO:0006379|mRNA cleavage;GO:0035194|posttranscriptional gene silencing by RNA;GO:0005783|endoplasmic reticulum;GO:0005634|nucleus;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0009793|embryonic development ending in seed dormancy;GO:0020037|heme binding | Ro07_G09419 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA632:Ro01_G00902,Ro01_G00904 | AT3G13750||AT4G26140||AT1G45130 | BGAL12; BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding||BGAL1; BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding||BGAL5; BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding | GO:0006979|response to oxidative stress;GO:0004565|beta-galactosidase activity;GO:0019515|lactose catabolic process via UDP-galactose;GO:0003824|catalytic activity;GO:0019513|lactose catabolic process, using glucoside 3-dehydrogenase;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0009341|beta-galactosidase complex;GO:0009505|plant-type cell wall;GO:0005990|lactose catabolic process;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | Ro06_G09125,Ro05_G16785 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA648:Ro01_G01273,Ro01_G01270 | AT3G12500 | ATHCHIB, PR3, PR-3, CHI-B, B-CHI; ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase | GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0009871|jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway;GO:0050832|defense response to fungus;GO:0004568|chitinase activity;GO:0005773|vacuole | Ro04_G21534,Ro02_G21490 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA655:Ro01_G04120,Ro01_G23148 | AT4G03430 | STA1, EMB2770; EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism | GO:0005634|nucleus;GO:0000398|nuclear mRNA splicing, via spliceosome;GO:0009409|response to cold;GO:0009628|response to abiotic stimulus | Ro07_G25186,Ro05_G14056 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA686:Ro01_G17051,Ro01_G23093 | AT1G64520 | RPN12a; RPN12a (Regulatory Particle non-ATPase 12a); peptidase | GO:0006511|ubiquitin-dependent protein catabolic process;GO:0048366|leaf development;GO:0009941|chloroplast envelope;GO:0043161|proteasomal ubiquitin-dependent protein catabolic process;GO:0009647|skotomorphogenesis;GO:0008541|proteasome regulatory particle, lid subcomplex;GO:0030163|protein catabolic process;GO:0009733|response to auxin stimulus;GO:0009908|flower development;GO:0009408|response to heat;GO:0005634|nucleus;GO:0008233|peptidase activity;GO:0043248|proteasome assembly;GO:0009735|response to cytokinin stimulus;GO:0048825|cotyledon development;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0051788|response to misfolded protein;GO:0000502|proteasome complex;GO:0048528|post-embryonic root development | Ro05_G01692,Ro01_G29932 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA739:Ro01_G29717,Ro01_G29725 | AT2G17220||AT4G35600 | protein kinase, putative||CONNEXIN 32; CONNEXIN 32; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0006499|N-terminal protein myristoylation | Ro01_G29617,Ro07_G34156 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA744:Ro01_G29787,Ro01_G29788 | AT5G10530||AT5G65600 | lectin protein kinase, putative||legume lectin family protein / protein kinase family protein | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | Ro04_G36516,Ro04_G37018 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA777:Ro01_G30239,Ro01_G11739 | AT5G54810||AT4G27070 | TSB1, TRPB, TRP2, ATTSB1; TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase||TSB2; TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase | GO:0009507|chloroplast;GO:0006979|response to oxidative stress;GO:0009570|chloroplast stroma;GO:0000162|tryptophan biosynthetic process;GO:0004834|tryptophan synthase activity;GO:0009651|response to salt stress;GO:0009684|indoleacetic acid biosynthetic process | Ro01_G08674,Ro03_G19779 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA794:Ro01_G30468,Ro01_G30478 | ATCG01110 | NDHH; Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. | GO:0009535|chloroplast thylakoid membrane;GO:0009507|chloroplast;GO:0009772|photosynthetic electron transport in photosystem II;GO:0003959|NADPH dehydrogenase activity | Ro04_G21580,Ro04_G37098 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA840:Ro02_G07992,Ro02_G21877 | AT2G16600||AT3G56070||AT5G58710 | ROC7; ROC7; peptidyl-prolyl cis-trans isomerase||ROC3; ROC3; peptidyl-prolyl cis-trans isomerase||ROC2; ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | GO:0009507|chloroplast;GO:0006457|protein folding;GO:0048364|root development;GO:0046686|response to cadmium ion;GO:0005886|plasma membrane;GO:0003755|peptidyl-prolyl cis-trans isomerase activity;GO:0007165|signal transduction;GO:0005829|cytosol | Ro06_G11299,Ro03_G06262 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA911:Ro02_G25589,Ro02_G35921 | AT5G17680||AT4G12010||AT5G46450||AT5G45200 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | Ro02_G10302,Ro06_G28177 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA912:Ro02_G25595,Ro02_G25590 | AT4G31690||AT5G66980 | transcriptional factor B3 family protein | GO:0009941|chloroplast envelope;GO:0003677|DNA binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0006355|regulation of transcription, DNA-dependent | Ro07_G11490,Ro04_G19702 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA932:Ro02_G35171,Ro02_G35169 | AT2G34320 | nucleic acid binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | Ro06_G28920,Ro07_G34640 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA960:Ro02_G35717,Ro02_G35718 | - | - | - | Ro02_G22759,Ro05_G31176 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA961:Ro02_G35746,Ro02_G35747 | AT1G19440 | KCS4; KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups | GO:0008415|acyltransferase activity;GO:0000038|very-long-chain fatty acid metabolic process;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0003824|catalytic activity;GO:0016020|membrane;GO:0042335|cuticle development | Ro02_G34824,Ro02_G35806 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA966:Ro02_G35808,Ro02_G35803 | AT2G22990||AT3G10450||AT5G09640 | SNG1, SCPL8; SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase||SCPL7; SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7); serine-type carboxypeptidase||SNG2, SCPL19; SCPL19; serine-type carboxypeptidase/ sinapoyltransferase | GO:0016752|sinapoyltransferase activity;GO:0006508|proteolysis;GO:0019748|secondary metabolic process;GO:0012505|endomembrane system | Ro02_G35804,Ro02_G35810 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA973:Ro02_G35920,Ro02_G15248 | AT4G33950||AT1G10940||AT5G66880 | ASK1, SNRK2-4, SNRK2.4, SRK2A; SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase||SNRK2-3, SNRK2.3, SRK2I; SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase||OST1, SNRK2-6, SRK2E, SNRK2.6, P44; OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase | GO:0010119|regulation of stomatal movement;GO:0048366|leaf development;GO:0006636|unsaturated fatty acid biosynthetic process;GO:0040007|growth;GO:0005985|sucrose metabolic process;GO:0010029|regulation of seed germination;GO:0009737|response to abscisic acid stimulus;GO:0005829|cytosol;GO:0006800|oxygen and reactive oxygen species metabolic process;GO:0009738|abscisic acid mediated signaling pathway;GO:0042742|defense response to bacterium;GO:0019432|triglyceride biosynthetic process;GO:0005634|nucleus;GO:0006970|response to osmotic stress;GO:0005737|cytoplasm;GO:0016301|kinase activity;GO:0010118|stomatal movement;GO:0009414|response to water deprivation;GO:0009789|positive regulation of abscisic acid mediated signaling pathway;GO:0009931|calcium-dependent protein serine/threonine kinase activity;GO:0009651|response to salt stress;GO:0009739|response to gibberellin stimulus;GO:0004672|protein kinase activity | Ro05_G31301,Ro01_G29721 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA975:Ro02_G36014,Ro02_G25332 | AT4G33840||AT4G33860 | glycosyl hydrolase family 10 protein | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | Ro03_G31915,Ro02_G36003 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA984:Ro03_G02074,Ro03_G02076 | AT1G68760 | ATNUDT1, ATNUDX1; ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1); dihydroneopterin triphosphate pyrophosphohydrolase/ hydrolase | GO:0008413|8-oxo-7,8-dihydroguanine triphosphatase activity;GO:0006974|response to DNA damage stimulus;GO:0016787|hydrolase activity;GO:0005829|cytosol;GO:0019177|dihydroneopterin triphosphate pyrophosphohydrolase activity | Ro03_G06309,Ro04_G36199 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA989:Ro03_G02188,Ro03_G25441 | AT1G07920 | elongation factor 1-alpha / EF-1-alpha | GO:0009507|chloroplast;GO:0046686|response to cadmium ion;GO:0003746|translation elongation factor activity;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005739|mitochondrion;GO:0016020|membrane | Ro04_G25741,Ro07_G17139 | 4 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1177:Ro03_G32893,Ro03_G06967;TA1882:Ro07_G24519,Ro07_G33994 | AT3G06240 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1707:Ro06_G28083,Ro06_G28084;TA1744:Ro06_G28703,Ro06_G28702 | AT3G58880||AT3G59170 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1801:Ro07_G09435,Ro07_G09436;TA1994:Ro07_G34727,Ro07_G34728 | AT5G52300||AT4G25580 | stress-responsive protein-related||RD29B, LTI65; LTI65 (LOW-TEMPERATURE-INDUCED 65) | GO:0003674|molecular_function;GO:0009414|response to water deprivation;GO:0009738|abscisic acid mediated signaling pathway;GO:0009651|response to salt stress;GO:0009737|response to abscisic acid stimulus;GO:0009409|response to cold;GO:0005575|cellular_component | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1928:Ro07_G33720,Ro07_G33730;TA1931:Ro07_G33760,Ro07_G06589 | AT2G44525 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA724:Ro01_G29510,Ro01_G21072;TA1351:Ro04_G36953,Ro04_G36952 | - | - | - | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA785:Ro01_G30344,Ro01_G24155;TA1952:Ro07_G34021,Ro07_G19556 | - | - | - | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA955:Ro02_G35558,Ro02_G35559;TA1144:Ro03_G32277,Ro03_G32278 | - | - | - | - | 4 | 2 | Rubus occidentalis | Roccidentalis | |||
| TA1000:Ro03_G05778,Ro03_G05781 | AT3G12670||AT1G30820||AT4G02120 | CTP synthase, putative / UTP--ammonia ligase, putative||emb2742; emb2742 (embryo defective 2742); CTP synthase/ catalytic | GO:0046686|response to cadmium ion;GO:0003824|catalytic activity;GO:0006221|pyrimidine nucleotide biosynthetic process;GO:0012505|endomembrane system;GO:0003883|CTP synthase activity;GO:0009218|pyrimidine ribonucleotide metabolic process | Ro05_G21815 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1010:Ro03_G06511,Ro03_G06508 | AT3G45620 | transducin family protein / WD-40 repeat family protein | GO:0005515|protein binding;GO:0000166|nucleotide binding;GO:0008150|biological_process | Ro02_G15102 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1019:Ro03_G08065,Ro03_G08066 | AT3G13620 | amino acid permease family protein | GO:0006865|amino acid transport;GO:0006810|transport;GO:0016020|membrane;GO:0015326|cationic amino acid transmembrane transporter activity | Ro05_G12591 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1023:Ro03_G08134,Ro03_G08135 | AT3G07160||AT5G13000||AT2G31960 | ATGSL03, GSL03, ATGSL3; ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups||ATGSL12, gsl12; ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups||ATGSL10, gsl10; ATGSL10 (glucan synthase-like 10); 1,3-beta-glucan synthase | GO:0006075|1,3-beta-glucan biosynthetic process;GO:0052543|callose deposition in cell wall;GO:0048589|developmental growth;GO:0016757|transferase activity, transferring glycosyl groups;GO:0009846|pollen germination;GO:0005886|plasma membrane;GO:0009555|pollen development;GO:0055047|generative cell mitosis;GO:0000148|1,3-beta-glucan synthase complex;GO:0003843|1,3-beta-glucan synthase activity;GO:0009556|microsporogenesis | Ro07_G15412 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1029:Ro03_G10513,Ro03_G10518 | AT1G61680||AT4G16740 | ATTPS03; ATTPS03; (E)-beta-ocimene synthase/ myrcene synthase||TPS14, ATTPS14; TPS14 (TERPENE SYNTHASE 14); S-linalool synthase | GO:0016099|monoterpenoid biosynthetic process;GO:0009536|plastid;GO:0050551|myrcene synthase activity;GO:0043693|monoterpene biosynthetic process;GO:0034007|S-linalool synthase activity;GO:0009611|response to wounding | Ro01_G22181 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1035:Ro03_G10655,Ro03_G31903 | AT5G05260 | CYP79A2; CYP79A2 (CYTOCHROME P450 79A2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding | GO:0016709|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;GO:0019761|glucosinolate biosynthetic process;GO:0019825|oxygen binding | Ro07_G33621 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1053:Ro03_G14095,Ro03_G14096 | AT4G22930 | PYR4, DHOASE; PYR4 (PYRIMIDIN 4); dihydroorotase/ hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | GO:0009507|chloroplast;GO:0004151|dihydroorotase activity;GO:0019856|pyrimidine base biosynthetic process;GO:0006207|'de novo' pyrimidine base biosynthetic process | Ro06_G20738 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1060:Ro03_G15851,Ro03_G32937 | AT3G12800 | SDRB, DECR; SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B); binding / catalytic/ oxidoreductase | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0008152|metabolic process;GO:0005777|peroxisome | Ro03_G05862 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1064:Ro03_G16135,Ro03_G33050 | AT1G62020 | coatomer protein complex, subunit alpha, putative | GO:0006886|intracellular protein transport;GO:0030126|COPI vesicle coat;GO:0006888|ER to Golgi vesicle-mediated transport;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0005215|transporter activity;GO:0005198|structural molecule activity;GO:0016192|vesicle-mediated transport;GO:0016020|membrane | Ro05_G16282 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1088:Ro03_G20472,Ro03_G20474 | AT5G12470 | unknown protein | GO:0003674|molecular_function;GO:0009536|plastid;GO:0008150|biological_process;GO:0005739|mitochondrion;GO:0009706|chloroplast inner membrane | Ro07_G09065 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1089:Ro03_G20479,Ro03_G32176 | AT1G17070||AT1G09450 | haspin-related||D111/G-patch domain-containing protein | GO:0003676|nucleic acid binding;GO:0005622|intracellular;GO:0008150|biological_process;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | Ro05_G19125 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1096:Ro03_G21983,Ro03_G21984 | AT3G19640 | magnesium transporter CorA-like family protein (MRS2-3) | GO:0005886|plasma membrane;GO:0046873|metal ion transmembrane transporter activity;GO:0030001|metal ion transport;GO:0015095|magnesium ion transmembrane transporter activity;GO:0016020|membrane | Ro02_G03096 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1097:Ro03_G21986,Ro03_G27526 | AT1G47710 | serpin, putative / serine protease inhibitor, putative | GO:0004869|cysteine-type endopeptidase inhibitor activity;GO:0008150|biological_process;GO:0048046|apoplast;GO:0004867|serine-type endopeptidase inhibitor activity | Ro03_G32158 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1100:Ro03_G23387,Ro03_G17761 | - | - | - | Ro04_G26765 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1101:Ro03_G23775,Ro03_G32178 | AT1G04555 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro03_G32334 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1104:Ro03_G24117,Ro03_G26791 | AT1G66150||AT2G01820 | TMK1; TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase||leucine-rich repeat protein kinase, putative | GO:0004674|protein serine/threonine kinase activity;GO:0005576|extracellular region;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0009555|pollen development;GO:0004672|protein kinase activity;GO:0009505|plant-type cell wall;GO:0007165|signal transduction;GO:0005524|ATP binding | Ro06_G07592 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1109:Ro03_G25483,Ro03_G25488 | AT5G06150||AT4G37490 | CYC1BAT, CYCB1;2; CYC1BAT; cyclin-dependent protein kinase regulator||CYC1, CYCB1;1, CYCB1; CYCB1;1 (CYCLIN B1;1); cyclin-dependent protein kinase regulator | GO:0016538|cyclin-dependent protein kinase regulator activity;GO:0010332|response to gamma radiation;GO:0009651|response to salt stress;GO:0001558|regulation of cell growth;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0051726|regulation of cell cycle | Ro05_G09387 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1117:Ro03_G27699,Ro03_G27539 | AT5G25610||AT2G13540 | RD22; RD22; nutrient reservoir||ENS, ABH1, CBP80, ATCBP80; ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding | GO:0009269|response to desiccation;GO:0009887|organ morphogenesis;GO:0045735|nutrient reservoir activity;GO:0006412|translation;GO:0012505|endomembrane system;GO:0048574|long-day photoperiodism, flowering;GO:0009651|response to salt stress;GO:0031053|primary microRNA processing;GO:0009737|response to abscisic acid stimulus;GO:0000339|RNA cap binding;GO:0005634|nucleus;GO:0000394|RNA splicing, via endonucleolytic cleavage and ligation | Ro03_G26305 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1126:Ro03_G31856,Ro03_G31857 | - | - | - | Ro04_G36724 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1133:Ro03_G32037,Ro03_G32036 | - | - | - | Ro03_G32071 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1154:Ro03_G32337,Ro03_G14302 | AT2G27040 | AGO4, OCP11; AGO4 (ARGONAUTE 4); nucleic acid binding | GO:0031048|chromatin silencing by small RNA;GO:0015030|Cajal body;GO:0005730|nucleolus;GO:0009816|defense response to bacterium, incompatible interaction;GO:0003676|nucleic acid binding;GO:0006342|chromatin silencing;GO:0030422|production of siRNA involved in RNA interference;GO:0005719|nuclear euchromatin;GO:0006306|DNA methylation | Ro03_G26924 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1160:Ro03_G32497,Ro03_G32495 | AT3G14460 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005524|ATP binding;GO:0006952|defense response | Ro03_G32496 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1167:Ro03_G32652,Ro03_G16923 | AT2G26460 | RED family protein | GO:0003674|molecular_function;GO:0005634|nucleus;GO:0008380|RNA splicing | Ro03_G32661 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1173:Ro03_G32795,Ro03_G32796 | - | - | - | Ro01_G00901 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1180:Ro03_G32918,Ro03_G32919 | - | - | - | Ro05_G13888 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1190:Ro03_G33143,Ro03_G33144 | AT1G17420 | LOX3; LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | GO:0009507|chloroplast;GO:0016165|lipoxygenase activity;GO:0046872|metal ion binding;GO:0005506|iron ion binding;GO:0009055|electron carrier activity;GO:0016702|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Ro07_G19071 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1203:Ro04_G00174,Ro04_G00173 | AT1G15000 | scpl50; scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0005773|vacuole | Ro02_G13782 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1207:Ro04_G00348,Ro04_G00347 | AT1G23890||AT1G70280 | NHL repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | Ro06_G28032 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1226:Ro04_G07221,Ro04_G07220 | - | - | - | Ro04_G15371 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1233:Ro04_G12625,Ro04_G36977 | AT5G09360||AT5G48100 | LAC14; LAC14 (laccase 14); laccase||TT10, LAC15, ATLAC15; TT10 (TRANSPARENT TESTA 10); copper ion binding / laccase | GO:0046274|lignin catabolic process;GO:0009813|flavonoid biosynthetic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity;GO:0046688|response to copper ion;GO:0009809|lignin biosynthetic process;GO:0005507|copper ion binding | Ro04_G36324 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1239:Ro04_G15356,Ro04_G15366 | AT4G14180 | AtPRD1; AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1); protein binding / protein homodimerization | GO:0009507|chloroplast;GO:0042803|protein homodimerization activity;GO:0005515|protein binding;GO:0051026|chiasma assembly;GO:0042138|meiotic DNA double-strand break formation | Ro04_G27585 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1242:Ro04_G15397,Ro04_G25899 | AT2G32000 | DNA topoisomerase family protein | GO:0003917|DNA topoisomerase type I activity;GO:0003677|DNA binding;GO:0003676|nucleic acid binding;GO:0012505|endomembrane system;GO:0003916|DNA topoisomerase activity;GO:0006268|DNA unwinding involved in replication;GO:0005694|chromosome;GO:0006259|DNA metabolic process;GO:0006265|DNA topological change | Ro07_G17245 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1248:Ro04_G17515,Ro04_G27824 | AT3G21740 | APO4; APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4) | GO:0005739|mitochondrion;GO:0008150|biological_process | Ro06_G06776 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1252:Ro04_G18879,Ro04_G36515 | AT2G16730 | BGAL13; BGAL13; beta-galactosidase | GO:0004565|beta-galactosidase activity;GO:0019515|lactose catabolic process via UDP-galactose;GO:0019513|lactose catabolic process, using glucoside 3-dehydrogenase;GO:0012505|endomembrane system;GO:0009341|beta-galactosidase complex;GO:0005990|lactose catabolic process;GO:0005975|carbohydrate metabolic process | Ro02_G08807 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1254:Ro04_G19484,Ro04_G19485 | AT1G67790||AT3G01680 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G09980 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1255:Ro04_G19565,Ro04_G19563 | AT2G37900||AT3G53960||AT2G40460 | proton-dependent oligopeptide transport (POT) family protein | GO:0009624|response to nematode;GO:0016020|membrane;GO:0005886|plasma membrane;GO:0005215|transporter activity;GO:0006857|oligopeptide transport | Ro06_G15300 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1267:Ro04_G21735,Ro04_G24816 | AT3G22880||AT1G48790 | ATDMC1, DMC1, ARLIM15; DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding||mov34 family protein | GO:0003674|molecular_function;GO:0006281|DNA repair;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0007131|reciprocal meiotic recombination;GO:0005634|nucleus;GO:0007126|meiosis;GO:0051026|chiasma assembly;GO:0005575|cellular_component;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0008094|DNA-dependent ATPase activity;GO:0003684|damaged DNA binding | Ro04_G36813 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1271:Ro04_G23317,Ro04_G23318 | AT5G46210 | CUL4, ATCUL4; CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase | GO:0010100|negative regulation of photomorphogenesis;GO:0048825|cotyledon development;GO:0006281|DNA repair;GO:0010182|sugar mediated signaling pathway;GO:0000151|ubiquitin ligase complex;GO:0005515|protein binding;GO:0009640|photomorphogenesis;GO:0048575|short-day photoperiodism, flowering;GO:0009908|flower development;GO:0048367|shoot development;GO:0005634|nucleus;GO:0004842|ubiquitin-protein ligase activity;GO:0000209|protein polyubiquitination;GO:0010154|fruit development;GO:0048366|leaf development;GO:0007049|cell cycle;GO:0009755|hormone-mediated signaling pathway | Ro01_G25544 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1281:Ro04_G25198,Ro04_G36702 | - | - | - | Ro05_G31448 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1287:Ro04_G26320,Ro04_G26317 | AT5G64210||AT3G22370 | AOX2; AOX2; alternative oxidase||AOX1A, ATAOX1A; AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase | GO:0005740|mitochondrial envelope;GO:0010230|alternative respiration;GO:0055114|oxidation reduction;GO:0009916|alternative oxidase activity;GO:0006950|response to stress;GO:0045333|cellular respiration;GO:0009409|response to cold;GO:0005739|mitochondrion | Ro05_G26153 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1296:Ro04_G36245,Ro04_G36244 | AT2G02580||AT3G26320 | CYP71B36; CYP71B36; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B9; CYP71B9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0008150|biological_process;GO:0019825|oxygen binding;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro04_G36486 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1298:Ro04_G36257,Ro04_G36255 | AT3G26590 | MATE efflux family protein | GO:0006855|drug transmembrane transport;GO:0015238|drug transmembrane transporter activity;GO:0005215|transporter activity;GO:0005886|plasma membrane;GO:0015297|antiporter activity;GO:0016020|membrane;GO:0005773|vacuole | Ro03_G31839 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1300:Ro04_G36336,Ro04_G36335 | AT1G48310 | CHR18, CHA18; CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding | GO:0003677|DNA binding;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro04_G08913 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1303:Ro04_G36353,Ro04_G21520 | - | - | - | Ro03_G26659 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1317:Ro04_G36604,Ro04_G36605 | AT5G48570||AT3G25230 | ROF2, ATFKBP65; peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative||ROF1, ATFKBP62, FKBP62; ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase | GO:0006457|protein folding;GO:0046686|response to cadmium ion;GO:0003755|peptidyl-prolyl cis-trans isomerase activity;GO:0005516|calmodulin binding;GO:0009408|response to heat;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005528|FK506 binding;GO:0009611|response to wounding;GO:0005773|vacuole | Ro02_G35221 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1321:Ro04_G36664,Ro04_G36665 | - | - | - | Ro04_G36673 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1330:Ro04_G36744,Ro04_G36747 | - | - | - | Ro01_G30134 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1331:Ro04_G36754,Ro04_G36755 | - | - | - | Ro02_G35635 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1334:Ro04_G36788,Ro04_G27412 | AT4G15570 | MAA3; MAA3 (MAGATAMA 3) | GO:0003674|molecular_function;GO:0009553|embryo sac development;GO:0009875|pollen-pistil interaction;GO:0010183|pollen tube guidance;GO:0005575|cellular_component | Ro01_G23319 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1336:Ro04_G36794,Ro04_G36811 | AT3G22680 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro01_G29767 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1344:Ro04_G36838,Ro04_G36840 | - | - | - | Ro01_G30430 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1347:Ro04_G36890,Ro04_G12740 | AT3G07300 | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein | GO:0044237|cellular metabolic process | Ro07_G34340 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1355:Ro04_G37060,Ro04_G37061 | - | - | - | Ro06_G29238 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1360:Ro04_G37115,Ro04_G37147 | ATCG00670 | CLPP1, PCLPP; Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). | GO:0009507|chloroplast;GO:0009570|chloroplast stroma;GO:0009532|plastid stroma | Ro04_G21579 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1361:Ro04_G37116,Ro04_G37149 | ATCG00710 | PSBH; Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII. | GO:0009507|chloroplast;GO:0016020|membrane;GO:0009579|thylakoid;GO:0042301|phosphate binding | Ro04_G37055 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1369:Ro04_G37204,Ro04_G37196 | AT1G73050 | (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative | GO:0016614|oxidoreductase activity, acting on CH-OH group of donors;GO:0046202|cyanide biosynthetic process;GO:0050660|FAD binding;GO:0012505|endomembrane system;GO:0006952|defense response | Ro04_G36797 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1371:Ro04_G37259,Ro04_G37258 | - | - | - | Ro04_G24128 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1397:Ro05_G11416,Ro05_G17898 | AT4G28830 | methyltransferase/ nucleic acid binding | GO:0005575|cellular_component;GO:0003676|nucleic acid binding;GO:0032259|methylation;GO:0008168|methyltransferase activity | Ro01_G29539 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1409:Ro05_G12155,Ro05_G30693 | AT1G62400||AT5G50000||AT3G01490 | HT1; HT1 (high leaf temperature 1); kinase/ protein serine/threonine/tyrosine kinase||protein kinase, putative | GO:0010119|regulation of stomatal movement;GO:0006468|protein amino acid phosphorylation;GO:0004712|protein serine/threonine/tyrosine kinase activity;GO:0016301|kinase activity;GO:0005575|cellular_component | Ro06_G09768 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1414:Ro05_G13808,Ro05_G13805 | AT3G03050 | CSLD3, KJK, ATCSLD3; CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups | GO:0010583|response to cyclopentenone;GO:0016757|transferase activity, transferring glycosyl groups;GO:0009832|plant-type cell wall biogenesis;GO:0000271|polysaccharide biosynthetic process;GO:0005886|plasma membrane;GO:0016759|cellulose synthase activity;GO:0005783|endoplasmic reticulum;GO:0005794|Golgi apparatus;GO:0009409|response to cold | Ro07_G08958 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1418:Ro05_G13935,Ro05_G31068 | AT1G63440 | HMA5; HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism | GO:0046688|response to copper ion;GO:0010273|detoxification of copper ion;GO:0016021|integral to membrane;GO:0015662|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;GO:0016020|membrane | Ro05_G30777 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1420:Ro05_G14061,Ro05_G31459 | AT5G17990 | TRP1, pat1; TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase | GO:0009507|chloroplast;GO:0009570|chloroplast stroma;GO:0000162|tryptophan biosynthetic process;GO:0009941|chloroplast envelope;GO:0004048|anthranilate phosphoribosyltransferase activity | Ro05_G12182 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1421:Ro05_G14146,Ro05_G14147 | AT2G47550||AT1G02810 | pectinesterase family protein | GO:0012505|endomembrane system;GO:0004857|enzyme inhibitor activity;GO:0030599|pectinesterase activity;GO:0009505|plant-type cell wall;GO:0042545|cell wall modification;GO:0005618|cell wall | Ro05_G16074 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1425:Ro05_G14505,Ro05_G14501 | AT3G01680 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro05_G18673 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1437:Ro05_G19582,Ro05_G26146 | AT1G59740||AT1G33440 | proton-dependent oligopeptide transport (POT) family protein | GO:0009624|response to nematode;GO:0016020|membrane;GO:0005886|plasma membrane;GO:0005215|transporter activity;GO:0006857|oligopeptide transport | Ro02_G08741 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1441:Ro05_G20007,Ro05_G23043 | AT3G07610||AT1G62310 | IBM1; IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor||transcription factor jumonji (jmjC) domain-containing protein | GO:0032454|histone demethylase activity (H3-K9 specific);GO:0005515|protein binding;GO:0009555|pollen development;GO:0008270|zinc ion binding;GO:0003700|transcription factor activity;GO:0009908|flower development;GO:0048366|leaf development;GO:0032776|DNA methylation on cytosine;GO:0033169|histone H3-K9 demethylation;GO:0005575|cellular_component | Ro05_G26116 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1450:Ro05_G22897,Ro05_G30962 | - | - | - | Ro05_G15553 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1481:Ro05_G27610,Ro05_G18742 | AT4G11610 | C2 domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G19529 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1486:Ro05_G30567,Ro05_G01682 | AT5G38250||AT1G18390||AT5G38280 | serine/threonine protein kinase, putative||ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase||PR5K; PR5K; kinase/ transmembrane receptor protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0009620|response to fungus | Ro05_G30600 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1490:Ro05_G30612,Ro05_G30611 | AT5G41040 | transferase family protein | GO:0016740|transferase activity;GO:0050734|hydroxycinnamoyltransferase activity;GO:0010345|suberin biosynthetic process;GO:0005575|cellular_component;GO:0052325|cell wall pectin biosynthetic process | Ro06_G03773 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1502:Ro05_G30864,Ro05_G30863 | AT4G18550 | lipase class 3 family protein | GO:0005575|cellular_component;GO:0004806|triglyceride lipase activity;GO:0006629|lipid metabolic process | Ro05_G31083 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1505:Ro05_G30905,Ro05_G30904 | AT3G17380 | meprin and TRAF homology domain-containing protein / MATH domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G28363 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1506:Ro05_G30913,Ro05_G30910 | AT5G39580||AT5G64120 | peroxidase, putative | GO:0004601|peroxidase activity;GO:0005618|cell wall;GO:0012505|endomembrane system;GO:0048046|apoplast;GO:0006499|N-terminal protein myristoylation;GO:0050832|defense response to fungus;GO:0045730|respiratory burst;GO:0016020|membrane;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro05_G31349 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1513:Ro05_G31037,Ro05_G31038 | AT3G18670||AT5G04700 | ankyrin repeat family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). | GO:0005515|protein binding;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0008150|biological_process | Ro05_G31431 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1514:Ro05_G31054,Ro05_G31060 | - | - | - | Ro05_G31044 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1522:Ro05_G31345,Ro05_G31346 | - | - | - | Ro07_G21985 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1528:Ro05_G31464,Ro05_G31463 | AT5G19210 | DEAD/DEAH box helicase, putative | GO:0008026|ATP-dependent helicase activity;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0005524|ATP binding | Ro04_G17663 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1542:Ro05_G31668,Ro05_G31684 | AT2G33160||AT3G09510 | nucleic acid binding||glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | GO:0003676|nucleic acid binding;GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0005975|carbohydrate metabolic process | Ro02_G34963 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1547:Ro05_G31715,Ro05_G22073 | AT1G22150||AT1G77990||AT1G78000 | SULTR1;3; SULTR1;3; sulfate transmembrane transporter||AST56, SULTR2;2; AST56; sulfate transmembrane transporter||SULTR1;2, SEL1; SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter | GO:0009970|cellular response to sulfate starvation;GO:0006810|transport;GO:0008272|sulfate transport;GO:0015116|sulfate transmembrane transporter activity;GO:0016021|integral to membrane;GO:0016020|membrane | Ro05_G25671 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1548:Ro05_G31722,Ro05_G31721 | AT1G12210||AT5G36930 | RFL1; RFL1 (RPS5-like 1); ATP binding / protein binding||disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0045087|innate immune response;GO:0006952|defense response;GO:0009617|response to bacterium;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | Ro04_G36575 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1557:Ro06_G04864,Ro06_G04866 | AT3G30390 | amino acid transporter family protein | GO:0006865|amino acid transport;GO:0005886|plasma membrane;GO:0015171|amino acid transmembrane transporter activity;GO:0016020|membrane;GO:0005773|vacuole | Ro04_G02562 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1589:Ro06_G09090,Ro06_G09086 | AT4G30110 | HMA2; HMA2; cadmium-transporting ATPase | GO:0006754|ATP biosynthetic process;GO:0012505|endomembrane system;GO:0030001|metal ion transport;GO:0016021|integral to membrane;GO:0008152|metabolic process;GO:0015434|cadmium-transporting ATPase activity;GO:0016020|membrane | Ro04_G05974 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1593:Ro06_G09099,Ro06_G28420 | AT3G13790 | ATCWINV1, ATBFRUCT1; ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds | GO:0004564|beta-fructofuranosidase activity;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0009611|response to wounding;GO:0005618|cell wall | Ro03_G32125 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1594:Ro06_G09103,Ro06_G09102 | AT5G27470 | seryl-tRNA synthetase / serine--tRNA ligase | GO:0004812|aminoacyl-tRNA ligase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0046686|response to cadmium ion | Ro06_G02879 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1607:Ro06_G09975,Ro06_G09977 | AT5G45500||AT5G45520 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0009507|chloroplast | Ro05_G14509 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1616:Ro06_G11622,Ro06_G18843 | - | - | - | Ro05_G31391 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1618:Ro06_G13104,Ro06_G13113 | AT3G51270 | ATP binding / catalytic/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0003824|catalytic activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro07_G25526 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1619:Ro06_G13106,Ro06_G29228 | AT2G22410||AT2G29760 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0031425|chloroplast RNA processing;GO:0009507|chloroplast | Ro05_G30594 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1628:Ro06_G14336,Ro06_G14343 | AT4G31480 | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative | GO:0006886|intracellular protein transport;GO:0005488|binding;GO:0030126|COPI vesicle coat;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0005198|structural molecule activity;GO:0030276|clathrin binding;GO:0016192|vesicle-mediated transport;GO:0030117|membrane coat | Ro04_G36617 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1635:Ro06_G15287,Ro06_G15286 | AT1G55020||AT3G22400 | LOX5; LOX5; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen||LOX1; LOX1; lipoxygenase | GO:0009507|chloroplast;GO:0016165|lipoxygenase activity;GO:0046872|metal ion binding;GO:0048364|root development;GO:0005506|iron ion binding;GO:0030397|membrane disassembly;GO:0009695|jasmonic acid biosynthetic process;GO:0009055|electron carrier activity;GO:0009753|response to jasmonic acid stimulus;GO:0009737|response to abscisic acid stimulus;GO:0006952|defense response;GO:0009816|defense response to bacterium, incompatible interaction;GO:0005575|cellular_component;GO:0009611|response to wounding;GO:0016702|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;GO:0040007|growth | Ro04_G27784 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1646:Ro06_G16992,Ro06_G16994 | AT1G15240 | phox (PX) domain-containing protein | GO:0007165|signal transduction;GO:0035091|phosphoinositide binding | Ro06_G28341 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1649:Ro06_G17614,Ro06_G28709 | AT5G39680||AT5G50390 | EMB2744; EMB2744 (EMBRYO DEFECTIVE 2744)||pentatricopeptide (PPR) repeat-containing protein | GO:0009507|chloroplast;GO:0005575|cellular_component;GO:0008150|biological_process;GO:0009793|embryonic development ending in seed dormancy | Ro07_G34279 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1652:Ro06_G18521,Ro06_G18522 | AT3G62770 | AtATG18a; AtATG18a | GO:0010149|senescence;GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0042594|response to starvation;GO:0006914|autophagy | Ro02_G07054 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1653:Ro06_G18527,Ro06_G28864 | AT1G09080||AT5G42020 | BIP, BIP2; BIP2; ATP binding||BIP3; BIP3; ATP binding | GO:0006457|protein folding;GO:0005788|endoplasmic reticulum lumen;GO:0046686|response to cadmium ion;GO:0010197|polar nucleus fusion;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005618|cell wall;GO:0005783|endoplasmic reticulum;GO:0009408|response to heat;GO:0005634|nucleus;GO:0005524|ATP binding;GO:0016020|membrane;GO:0005773|vacuole;GO:0009860|pollen tube growth | Ro05_G01704 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1654:Ro06_G18915,Ro06_G18912 | AT3G56150 | EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1; EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C); translation initiation factor | GO:0006413|translational initiation;GO:0005634|nucleus;GO:0005829|cytosol;GO:0003743|translation initiation factor activity | Ro05_G14140 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1660:Ro06_G19503,Ro06_G19501 | AT3G10050 | OMR1; OMR1 (L-O-METHYLTHREONINE RESISTANT 1); L-threonine ammonia-lyase | GO:0009507|chloroplast;GO:0006566|threonine metabolic process;GO:0004794|L-threonine ammonia-lyase activity;GO:0009097|isoleucine biosynthetic process | Ro04_G37303 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1669:Ro06_G20959,Ro06_G20963 | AT3G59030 | TT12, ATTT12; TT12 (TRANSPARENT TESTA 12); antiporter/ solute:hydrogen antiporter/ transmembrane transporter/ transporter | GO:0005215|transporter activity;GO:0010023|proanthocyanidin biosynthetic process;GO:0015297|antiporter activity;GO:0022857|transmembrane transporter activity;GO:0015299|solute:hydrogen antiporter activity;GO:0010231|maintenance of seed dormancy;GO:0009705|plant-type vacuole membrane;GO:0016020|membrane | Ro06_G26278 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1673:Ro06_G22302,Ro06_G28390 | - | - | - | Ro06_G29358 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1679:Ro06_G22919,Ro06_G22920 | AT2G37270 | ATRPS5B; ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome | GO:0009507|chloroplast;GO:0003735|structural constituent of ribosome;GO:0005886|plasma membrane;GO:0022626|cytosolic ribosome;GO:0006412|translation;GO:0005840|ribosome;GO:0016020|membrane;GO:0022627|cytosolic small ribosomal subunit;GO:0005618|cell wall | Ro02_G35026 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1681:Ro06_G22974,Ro06_G28243 | AT5G48930 | HCT; HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase | GO:0016740|transferase activity;GO:0047205|quinate O-hydroxycinnamoyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0047172|shikimate O-hydroxycinnamoyltransferase activity;GO:0005575|cellular_component;GO:0010252|auxin homeostasis;GO:0009963|positive regulation of flavonoid biosynthetic process | Ro06_G28189 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1691:Ro06_G25271,Ro06_G17637 | - | - | - | Ro02_G35874 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1693:Ro06_G26123,Ro06_G20262 | AT3G14470 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response | Ro06_G29321 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1700:Ro06_G27417,Ro06_G09707 | AT2G30050||AT3G01340 | protein transport protein SEC13 family protein / WD-40 repeat family protein||transducin family protein / WD-40 repeat family protein | GO:0006886|intracellular protein transport;GO:0000166|nucleotide binding;GO:0005730|nucleolus;GO:0006900|membrane budding;GO:0005575|cellular_component | Ro06_G25216 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1711:Ro06_G28284,Ro06_G28286 | AT4G32250 | protein kinase family protein | GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro06_G28302 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1715:Ro06_G28344,Ro06_G12402 | AT2G25737 | unknown protein | GO:0016021|integral to membrane;GO:0012505|endomembrane system | Ro05_G22079 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1736:Ro06_G28607,Ro06_G06699 | AT2G32940||AT1G12000 | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative||AGO6; AGO6 (ARGONAUTE 6); nucleic acid binding | GO:0010318|pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex;GO:0046686|response to cadmium ion;GO:0006096|glycolysis;GO:0047334|diphosphate-fructose-6-phosphate 1-phosphotransferase activity;GO:0003676|nucleic acid binding;GO:0015979|photosynthesis;GO:0005634|nucleus;GO:0006342|chromatin silencing;GO:0030422|production of siRNA involved in RNA interference;GO:0006306|DNA methylation;GO:0016020|membrane;GO:0005618|cell wall | Ro03_G10254 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1746:Ro06_G28759,Ro06_G28761 | - | - | - | Ro04_G16982 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1747:Ro06_G28844,Ro06_G28845 | - | - | - | Ro01_G20746 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1748:Ro06_G28851,Ro06_G18547 | AT5G27830 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 46 Blast hits to 46 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | GO:0006979|response to oxidative stress;GO:0003674|molecular_function;GO:0012505|endomembrane system | Ro07_G25518 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1757:Ro06_G28981,Ro06_G28979 | AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel | GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | Ro06_G28980 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1761:Ro06_G29091,Ro06_G23700 | AT2G16810 | F-box family protein (FBX8) | GO:0004842|ubiquitin-protein ligase activity;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0005575|cellular_component | Ro05_G11775 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1762:Ro06_G29092,Ro06_G29093 | AT3G52930||AT4G26510 | fructose-bisphosphate aldolase, putative||ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase | GO:0005524|ATP binding;GO:0005739|mitochondrion;GO:0005829|cytosol;GO:0005507|copper ion binding;GO:0009507|chloroplast;GO:0046686|response to cadmium ion;GO:0048046|apoplast;GO:0016773|phosphotransferase activity, alcohol group as acceptor;GO:0005618|cell wall;GO:0006098|pentose-phosphate shunt;GO:0008152|metabolic process;GO:0016301|kinase activity;GO:0005740|mitochondrial envelope;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0004845|uracil phosphoribosyltransferase activity | Ro03_G14645 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1763:Ro06_G29098,Ro06_G29096 | AT2G36430 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G29097 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1764:Ro06_G29150,Ro06_G07551 | AT3G13390||AT1G55570 | sks11; sks11 (SKU5 Similar 11); copper ion binding / oxidoreductase||sks12; sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase | GO:0016491|oxidoreductase activity;GO:0012505|endomembrane system;GO:0005507|copper ion binding | Ro03_G08125 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1778:Ro07_G04641,Ro07_G04640 | - | - | - | Ro07_G12323 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1789:Ro07_G07772,Ro07_G07773 | AT3G55570 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G05606 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1792:Ro07_G07831,Ro07_G07833 | AT5G05780||AT2G39990 | EIF2; EIF2; translation initiation factor||RPN8A, AE3, ATHMOV34; RPN8A (RP NON-ATPASE SUBUNIT 8A) | GO:0008541|proteasome regulatory particle, lid subcomplex;GO:0003674|molecular_function;GO:0003743|translation initiation factor activity;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0006413|translational initiation;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005852|eukaryotic translation initiation factor 3 complex;GO:0016020|membrane;GO:0009965|leaf morphogenesis | Ro06_G14430 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1799:Ro07_G09151,Ro07_G33962 | - | - | - | Ro04_G37169 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1808:Ro07_G11977,Ro07_G34503 | AT3G55140 | pectate lyase family protein | GO:0030570|pectate lyase activity;GO:0016829|lyase activity | Ro06_G06195 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1820:Ro07_G13604,Ro07_G13606 | AT2G26720||AT5G26330 | plastocyanin-like domain-containing protein / mavicyanin, putative | GO:0031225|anchored to membrane;GO:0009055|electron carrier activity;GO:0005507|copper ion binding | Ro07_G22624 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1821:Ro07_G13614,Ro07_G18717 | AT4G00170||AT2G45140 | PVA12; PVA12 (PLANT VAP HOMOLOG 12); structural molecule||vesicle-associated membrane family protein / VAMP family protein | GO:0005886|plasma membrane;GO:0005198|structural molecule activity;GO:0005783|endoplasmic reticulum;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005575|cellular_component;GO:0005829|cytosol | Ro05_G08652 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1831:Ro07_G15421,Ro07_G33237 | AT2G44480 | BGLU17; BGLU17 (BETA GLUCOSIDASE 17); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | Ro07_G25239 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1832:Ro07_G15423,Ro07_G24171 | AT5G09360 | LAC14; LAC14 (laccase 14); laccase | GO:0046274|lignin catabolic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity | Ro07_G34188 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1835:Ro07_G15728,Ro07_G34252 | - | - | - | Ro02_G35826 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1852:Ro07_G19652,Ro07_G19651 | AT5G41761 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro07_G07953 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1860:Ro07_G21212,Ro07_G33966 | AT5G43960 | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | GO:0006810|transport;GO:0003676|nucleic acid binding;GO:0005622|intracellular;GO:0003723|RNA binding;GO:0006913|nucleocytoplasmic transport;GO:0000166|nucleotide binding | Ro04_G12640 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1861:Ro07_G21213,Ro07_G33970 | - | - | - | Ro01_G24767 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1866:Ro07_G22192,Ro07_G22189 | AT5G46160 | ribosomal protein L14 family protein / huellenlos paralog (HLP) | GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0015934|large ribosomal subunit;GO:0005622|intracellular;GO:0005840|ribosome | Ro02_G16192 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1868:Ro07_G22403,Ro07_G22402 | AT1G09560||AT1G18970||AT1G02335 | GL22; GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir||GLP4; GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir||GLP5; GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir | GO:0045735|nutrient reservoir activity;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0030145|manganese ion binding;GO:0005634|nucleus;GO:0009409|response to cold;GO:0005618|cell wall | Ro07_G23577 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1870:Ro07_G22618,Ro07_G12668 | AT5G06360 | ribosomal protein S8e family protein | GO:0042254|ribosome biogenesis;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0005622|intracellular;GO:0005840|ribosome | Ro05_G18624 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1872:Ro07_G23155,Ro07_G23151 | AT3G11220 | ELO1; Paxneb protein-related | GO:0033588|Elongator holoenzyme complex | Ro01_G15239 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1878:Ro07_G24008,Ro07_G21658 | AT4G00740||AT4G00750 | dehydration-responsive family protein||dehydration-responsive protein-related | GO:0008150|biological_process;GO:0005794|Golgi apparatus | Ro03_G10509 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1881:Ro07_G24516,Ro07_G33992 | AT1G21230||AT1G21210 | WAK5; WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase||WAK4; WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase | GO:0048527|lateral root development;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0009826|unidimensional cell growth;GO:0006468|protein amino acid phosphorylation;GO:0005509|calcium ion binding;GO:0005524|ATP binding | Ro07_G08975 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1891:Ro07_G25680,Ro07_G25681 | AT4G31920||AT3G16857||AT5G58080 | ARR10; ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator||ARR18; ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18); transcription factor/ two-component response regulator||ARR1; ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator | GO:0003700|transcription factor activity;GO:0009736|cytokinin mediated signaling pathway;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0000156|two-component response regulator activity;GO:0048367|shoot development;GO:0031537|regulation of anthocyanin metabolic process;GO:0010380|regulation of chlorophyll biosynthetic process;GO:0009735|response to cytokinin stimulus | Ro03_G20492 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1899:Ro07_G27174,Ro07_G27173 | AT1G07900 | LBD1; LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1) | GO:0005739|mitochondrion;GO:0008150|biological_process | Ro07_G33926 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1903:Ro07_G33256,Ro07_G07858 | AT5G54160 | ATOMT1, OMT1; ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3'-O-methyltransferase/ quercetin 3-O-methyltransferase | GO:0051555|flavonol biosynthetic process;GO:0005886|plasma membrane;GO:0047763|caffeate O-methyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0005634|nucleus;GO:0033799|myricetin 3'-O-methyltransferase activity;GO:0005737|cytoplasm;GO:0030755|quercetin 3-O-methyltransferase activity;GO:0005829|cytosol | Ro02_G35187 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1907:Ro07_G33320,Ro07_G33334 | AT2G45990 | unknown protein | GO:0009507|chloroplast;GO:0009570|chloroplast stroma | Ro07_G04330 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1908:Ro07_G33322,Ro07_G33339 | AT2G46000 | unknown protein | GO:0012505|endomembrane system | Ro07_G04331 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1929:Ro07_G33721,Ro07_G06590 | AT3G60150 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro07_G33762 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1938:Ro07_G33867,Ro07_G33879 | AT5G65560 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro05_G06569 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1945:Ro07_G33904,Ro07_G24294 | AT3G26210||AT3G26330||AT3G26300 | CYP71B23; CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B37; CYP71B37; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71B34; CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro06_G29380 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1948:Ro07_G33988,Ro07_G33989 | - | - | - | Ro03_G17483 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1949:Ro07_G33998,Ro07_G33999 | - | - | - | Ro03_G23191 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1950:Ro07_G34003,Ro07_G17080 | AT4G16890||AT4G12010||AT5G17680 | disease resistance protein (TIR-NBS-LRR class), putative||SNC1, BAL; SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding | GO:0031224|intrinsic to membrane;GO:0005524|ATP binding;GO:0009733|response to auxin stimulus;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0009816|defense response to bacterium, incompatible interaction;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0000166|nucleotide binding | Ro02_G36010 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1960:Ro07_G34153,Ro07_G34152 | - | - | - | Ro01_G29720 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1972:Ro07_G34354,Ro07_G34350 | AT3G54490 | RPB5E; RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase | GO:0003677|DNA binding;GO:0005634|nucleus;GO:0006350|transcription;GO:0003899|DNA-directed RNA polymerase activity | Ro06_G28141 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1978:Ro07_G34432,Ro07_G34433 | AT3G08040||AT1G51340 | FRD3, MAN1; FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter||MATE efflux family protein | GO:0006855|drug transmembrane transport;GO:0015238|drug transmembrane transporter activity;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0015297|antiporter activity;GO:0016020|membrane | Ro07_G34434 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1984:Ro07_G34540,Ro07_G19454 | AT5G04550 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro07_G34543 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1990:Ro07_G34634,Ro07_G34635 | AT5G61520 | hexose transporter, putative | GO:0005351|sugar:hydrogen symporter activity;GO:0006810|transport;GO:0055085|transmembrane transport;GO:0016021|integral to membrane;GO:0015144|carbohydrate transmembrane transporter activity;GO:0016020|membrane | Ro05_G31582 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1996:Ro07_G34749,Ro07_G24113 | AT5G51790 | basix helix-loop-helix (bHLH) family protein | GO:0045449|regulation of transcription;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0003700|transcription factor activity | Ro07_G24114 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA291:Ro01_G10747,Ro01_G10749,Ro01_G10750 | AT2G26140 | ftsh4; ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase | GO:0006508|proteolysis;GO:0009536|plastid;GO:0016887|ATPase activity;GO:0005739|mitochondrion;GO:0030163|protein catabolic process;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA293:Ro01_G12244,Ro01_G12243,Ro01_G12242 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA294:Ro01_G14710,Ro01_G14704,Ro01_G27118 | AT5G16370 | AAE5; AAE5 (ACYL ACTIVATING ENZYME 5); catalytic | GO:0008152|metabolic process;GO:0005777|peroxisome;GO:0003824|catalytic activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA296:Ro01_G20310,Ro01_G20311,Ro01_G20312 | AT4G39530||AT5G52630 | MEF1; MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1)||pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0016554|cytidine to uridine editing;GO:0005488|binding;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA297:Ro01_G20323,Ro01_G29905,Ro01_G29904 | AT5G64840 | ATGCN5; ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5); transporter | GO:0009624|response to nematode;GO:0005215|transporter activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA298:Ro01_G20324,Ro01_G29906,Ro01_G11692 | AT2G43870||AT5G02820 | RHL2, BIN5; RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding||polygalacturonase, putative / pectinase, putative | GO:0005515|protein binding;GO:0003677|DNA binding;GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity;GO:0005634|nucleus;GO:0006259|DNA metabolic process;GO:0009957|epidermal cell fate specification;GO:0005524|ATP binding;GO:0005975|carbohydrate metabolic process;GO:0006265|DNA topological change | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA299:Ro01_G20927,Ro01_G29847,Ro01_G12269 | AT4G36860||AT5G17680 | zinc ion binding||disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0008270|zinc ion binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA302:Ro01_G29488,Ro01_G29489,Ro01_G29491 | AT2G41040 | methyltransferase-related | GO:0009507|chloroplast;GO:0010287|plastoglobule;GO:0008168|methyltransferase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA303:Ro01_G29793,Ro01_G11163,Ro01_G29795 | AT3G23880||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0031348|negative regulation of defense response | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA306:Ro01_G29848,Ro01_G29852,Ro01_G29849 | AT5G65380 | ripening-responsive protein, putative | GO:0009835|ripening;GO:0006855|drug transmembrane transport;GO:0015238|drug transmembrane transporter activity;GO:0005215|transporter activity;GO:0015297|antiporter activity;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA308:Ro01_G29983,Ro01_G29985,Ro01_G29984 | AT1G65810 | tRNA-splicing endonuclease positive effector-related | GO:0008150|biological_process;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA309:Ro01_G30009,Ro01_G22948,Ro01_G30010 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA312:Ro01_G30114,Ro01_G30115,Ro01_G30116 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA314:Ro01_G30190,Ro01_G30191,Ro01_G11271 | AT4G01870 | tolB protein-related | GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA317:Ro02_G00618,Ro02_G00617,Ro02_G00616 | AT2G41100||AT2G15680||AT1G32250 | calmodulin, putative||calmodulin-related protein, putative||TCH3, ATCAL4; TCH3 (TOUCH 3); calcium ion binding | GO:0009612|response to mechanical stimulus;GO:0009646|response to absence of light;GO:0005886|plasma membrane;GO:0009266|response to temperature stimulus;GO:0008150|biological_process;GO:0005509|calcium ion binding;GO:0009652|thigmotropism;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA319:Ro02_G01555,Ro02_G01553,Ro02_G01552 | AT1G80490||AT3G16830 | TPR1; TPR1 (TOPLESS-RELATED 1)||TPR2; TPR2 (TOPLESS-RELATED 2) | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0010072|primary shoot apical meristem specification;GO:0005829|cytosol | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA321:Ro02_G03968,Ro02_G03965,Ro02_G03964 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA322:Ro02_G05418,Ro02_G35167,Ro02_G35166 | AT2G29420||AT3G09270 | ATGSTU7, GST25; ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7); glutathione transferase||ATGSTU8; ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase | GO:0046686|response to cadmium ion;GO:0009407|toxin catabolic process;GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0009751|response to salicylic acid stimulus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA323:Ro02_G08047,Ro02_G36038,Ro02_G36037 | AT1G50090 | aminotransferase class IV family protein | GO:0004084|branched-chain-amino-acid transaminase activity;GO:0003824|catalytic activity;GO:0008152|metabolic process;GO:0009081|branched chain family amino acid metabolic process;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA324:Ro02_G10982,Ro02_G10980,Ro02_G10979 | AT5G48540 | 33 kDa secretory protein-related | GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA325:Ro02_G12682,Ro02_G12675,Ro02_G12674 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA326:Ro02_G12712,Ro02_G12711,Ro02_G12710 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA327:Ro02_G13770,Ro02_G13763,Ro02_G35150 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA330:Ro02_G16210,Ro02_G16211,Ro02_G20342 | AT2G21520||AT2G21540 | ATSFH3, SFH3; SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter||transporter | GO:0006810|transport;GO:0005215|transporter activity;GO:0005622|intracellular | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA332:Ro02_G19266,Ro02_G19267,Ro02_G19269 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA333:Ro02_G19268,Ro02_G35280,Ro02_G35281 | AT1G11620||AT2G14710 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA335:Ro02_G20099,Ro02_G20103,Ro02_G35411 | AT1G76710 | SDG26; SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase | GO:0010228|vegetative to reproductive phase transition of meristem;GO:0005634|nucleus;GO:0016571|histone methylation;GO:0018024|histone-lysine N-methyltransferase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA336:Ro02_G20289,Ro02_G20291,Ro02_G20292 | AT1G49320 | BURP domain-containing protein | GO:0000326|protein storage vacuole;GO:0003674|molecular_function;GO:0048316|seed development | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA337:Ro02_G20309,Ro02_G27239,Ro02_G21340 | AT3G18830 | ATPLT5; ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transmembrane transporter/ D-xylose transmembrane transporter/ carbohydrate transmembrane transporter/ galactose transmembrane transporter/ glucose transmembrane transporter/ glycerol transmembrane transporter/ mann | GO:0015575|mannitol transmembrane transporter activity;GO:0015168|glycerol transmembrane transporter activity;GO:0005351|sugar:hydrogen symporter activity;GO:0005355|glucose transmembrane transporter activity;GO:0005354|galactose transmembrane transporter activity;GO:0015148|D-xylose transmembrane transporter activity;GO:0005886|plasma membrane;GO:0006810|transport;GO:0055085|transmembrane transport;GO:0015144|carbohydrate transmembrane transporter activity;GO:0015591|D-ribose transmembrane transporter activity;GO:0015145|monosaccharide transmembrane transporter activity;GO:0005365|myo-inositol transmembrane transporter activity;GO:0016020|membrane;GO:0015576|sorbitol transmembrane transporter activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA338:Ro02_G20702,Ro02_G20701,Ro02_G35452 | AT5G09360 | LAC14; LAC14 (laccase 14); laccase | GO:0046274|lignin catabolic process;GO:0055114|oxidation reduction;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0008471|laccase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA340:Ro02_G22007,Ro02_G22008,Ro02_G22012 | AT5G09570 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64400.1); Has 141 Blast hits to 141 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 31; Plants - 42; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0008150|biological_process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA341:Ro02_G22755,Ro02_G22752,Ro02_G22750 | AT2G21340 | antiporter/ drug transporter | GO:0015238|drug transmembrane transporter activity;GO:0009507|chloroplast;GO:0015297|antiporter activity;GO:0006855|drug transmembrane transport | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA342:Ro02_G25657,Ro02_G15864,Ro02_G15865 | AT5G43400 | unknown protein | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0008150|biological_process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA344:Ro02_G34919,Ro02_G34918,Ro02_G00538 | AT4G37320||AT4G37340||AT4G37370 | CYP81D8; CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP81D5; CYP81D5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP81D3; CYP81D3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0005886|plasma membrane;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA345:Ro02_G34985,Ro02_G34987,Ro02_G34991 | AT4G38830 | protein kinase family protein | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA349:Ro02_G35242,Ro02_G35244,Ro02_G35243 | AT2G43820||AT1G05680 | GT, UGT74F2; UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups||UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0016757|transferase activity, transferring glycosyl groups;GO:0035251|UDP-glucosyltransferase activity;GO:0046482|para-aminobenzoic acid metabolic process;GO:0008194|UDP-glycosyltransferase activity;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA350:Ro02_G35351,Ro02_G35347,Ro02_G35348 | AT1G78780 | pathogenesis-related family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA351:Ro02_G35362,Ro02_G35363,Ro02_G35364 | AT5G53130||AT2G23980 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC6, CNGC6; ATCNGC6; calmodulin binding | GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0046686|response to cadmium ion;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA353:Ro02_G35394,Ro02_G35397,Ro02_G35396 | AT5G62970 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA355:Ro02_G35660,Ro02_G35661,Ro02_G35659 | AT4G23810 | WRKY53, ATWRKY53; WRKY53; DNA binding / protein binding / transcription activator/ transcription factor | GO:0009507|chloroplast | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA357:Ro02_G35741,Ro02_G18990,Ro02_G18994 | AT2G21385 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA359:Ro02_G35791,Ro02_G35792,Ro02_G35794 | AT1G19640 | JMT; JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase | GO:0030795|jasmonate O-methyltransferase activity;GO:0009694|jasmonic acid metabolic process;GO:0009695|jasmonic acid biosynthetic process;GO:0009867|jasmonic acid mediated signaling pathway;GO:0005737|cytoplasm;GO:0009611|response to wounding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA361:Ro02_G35880,Ro02_G16548,Ro02_G35881 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA363:Ro02_G35962,Ro02_G26374,Ro02_G25701 | AT4G06744||AT1G49750||AT3G19320 | leucine-rich repeat family protein||leucine-rich repeat family protein / extensin family protein | GO:0005515|protein binding;GO:0008150|biological_process;GO:0009507|chloroplast;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA365:Ro02_G36047,Ro02_G08049,Ro02_G36039 | AT1G50060||AT2G14610||AT2G19990 | PR-1-LIKE; PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)||pathogenesis-related protein, putative||PR1, PR 1, ATPR1; PR1 (PATHOGENESIS-RELATED GENE 1) | GO:0009627|systemic acquired resistance;GO:0003674|molecular_function;GO:0005576|extracellular region;GO:0012505|endomembrane system;GO:0009753|response to jasmonic acid stimulus;GO:0008150|biological_process;GO:0006952|defense response;GO:0010266|response to vitamin B1;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA367:Ro03_G02039,Ro03_G02046,Ro03_G02048 | AT2G28200||AT5G03510 | nucleic acid binding / transcription factor/ zinc ion binding||zinc finger (C2H2 type) family protein | GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA372:Ro03_G08717,Ro03_G32851,Ro03_G32852 | AT4G16890 | SNC1, BAL; SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding | GO:0031224|intrinsic to membrane;GO:0009733|response to auxin stimulus;GO:0006952|defense response;GO:0009816|defense response to bacterium, incompatible interaction;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0000166|nucleotide binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA374:Ro03_G10387,Ro03_G10383,Ro03_G10382 | AT1G78850||AT1G78860||AT1G78830 | curculin-like (mannose-binding) lectin family protein | GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0005529|sugar binding;GO:0009505|plant-type cell wall;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA375:Ro03_G10859,Ro03_G10860,Ro03_G10862 | AT5G53130||AT2G46440 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC11, CNGC11; ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane;GO:0009620|response to fungus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA378:Ro03_G12044,Ro03_G12046,Ro03_G12047 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA381:Ro03_G13709,Ro03_G13708,Ro03_G13707 | AT2G28085||AT1G75580 | auxin-responsive family protein||auxin-responsive protein, putative | GO:0005516|calmodulin binding;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0009733|response to auxin stimulus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA382:Ro03_G15338,Ro03_G15336,Ro03_G15334 | AT2G20340 | tyrosine decarboxylase, putative | GO:0004837|tyrosine decarboxylase activity;GO:0003824|catalytic activity;GO:0030170|pyridoxal phosphate binding;GO:0005575|cellular_component;GO:0016831|carboxy-lyase activity;GO:0009611|response to wounding;GO:0006520|cellular amino acid metabolic process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA383:Ro03_G15663,Ro03_G27360,Ro03_G26645 | AT3G07040 | RPM1, RPS3; RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); nucleotide binding / protein binding | GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0009626|plant-type hypersensitive response;GO:0006952|defense response;GO:0000166|nucleotide binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA384:Ro03_G16008,Ro03_G16006,Ro03_G32746 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA385:Ro03_G16264,Ro03_G27227,Ro03_G27226 | AT1G19715||AT1G52030 | MBP2, MBP1.2, F-ATMBP; MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding||jacalin lectin family protein | GO:0003674|molecular_function;GO:0007155|cell adhesion;GO:0009908|flower development;GO:0005529|sugar binding;GO:0008150|biological_process;GO:0010169|thioglucosidase complex;GO:0006952|defense response;GO:0010180|thioglucosidase binding;GO:0005575|cellular_component;GO:0009611|response to wounding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA386:Ro03_G17154,Ro03_G33040,Ro03_G33042 | AT5G53130||AT4G01010 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC13, CNGC13; ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA387:Ro03_G17418,Ro03_G17417,Ro03_G13454 | AT5G08420 | RNA binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA389:Ro03_G19101,Ro03_G32805,Ro03_G19102 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA399:Ro03_G27225,Ro03_G27223,Ro03_G01996 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA405:Ro03_G31820,Ro03_G31815,Ro03_G14668 | AT4G12560||AT3G23880||AT1G47710 | F-box family protein||serpin, putative / serine protease inhibitor, putative | GO:0003674|molecular_function;GO:0048046|apoplast;GO:0004867|serine-type endopeptidase inhibitor activity;GO:0004869|cysteine-type endopeptidase inhibitor activity;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0031348|negative regulation of defense response | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA406:Ro03_G31911,Ro03_G06304,Ro03_G06302 | AT5G06600||AT3G11910 | UBP13; UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease||UBP12; UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease | GO:0003690|double-stranded DNA binding;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0004221|ubiquitin thiolesterase activity;GO:0005575|cellular_component;GO:0006265|DNA topological change | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA408:Ro03_G31951,Ro03_G31950,Ro03_G31953 | AT5G59590 | UGT76E2; UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA409:Ro03_G32069,Ro03_G23225,Ro03_G23228 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA410:Ro03_G32089,Ro03_G13718,Ro03_G13716 | AT1G08090 | ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1; ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter | GO:0048527|lateral root development;GO:0015112|nitrate transmembrane transporter activity;GO:0015706|nitrate transport;GO:0010167|response to nitrate;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA417:Ro03_G32368,Ro03_G32369,Ro03_G32385 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA419:Ro03_G32465,Ro03_G32419,Ro03_G32420 | AT1G05750 | PDE247, CLB19; PDE247 (pigment defective 247) | GO:0009507|chloroplast;GO:0009451|RNA modification | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA420:Ro03_G32573,Ro03_G18871,Ro03_G18874 | AT1G02850 | BGLU11; BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA421:Ro03_G32591,Ro03_G04942,Ro03_G32619 | AT4G37640||AT2G20142 | ACA2; ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding||transmembrane receptor | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005886|plasma membrane;GO:0006810|transport;GO:0015085|calcium ion transmembrane transporter activity;GO:0005783|endoplasmic reticulum;GO:0005516|calmodulin binding;GO:0005388|calcium-transporting ATPase activity;GO:0005789|endoplasmic reticulum membrane;GO:0045087|innate immune response;GO:0007165|signal transduction | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA427:Ro03_G32938,Ro03_G32929,Ro03_G32930 | AT3G12760 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15860.2); Has 628 Blast hits to 626 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 408; Fungi - 99; Plants - 64; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA429:Ro03_G32977,Ro03_G32993,Ro03_G32978 | AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel | GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA430:Ro03_G33006,Ro03_G33004,Ro03_G33005 | AT5G11720 | alpha-glucosidase 1 (AGLU1) | GO:0048046|apoplast;GO:0009505|plant-type cell wall;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005773|vacuole | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA431:Ro03_G33052,Ro03_G27480,Ro03_G27479 | AT4G30560||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC9, CNGC9; ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0030551|cyclic nucleotide binding;GO:0005261|cation channel activity;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA433:Ro03_G33127,Ro03_G06453,Ro03_G33126 | AT4G17905 | ATL4H; ATL4H; protein binding / zinc ion binding | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA434:Ro03_G33182,Ro03_G33183,Ro03_G13517 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA435:Ro03_G33184,Ro03_G33185,Ro03_G13518 | AT2G47980 | SCC3, ATSCC3; SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding | GO:0005488|binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA436:Ro03_G33187,Ro03_G27849,Ro03_G33175 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA437:Ro04_G02742,Ro04_G02743,Ro04_G02745 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA439:Ro04_G06376,Ro04_G06373,Ro04_G36429 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA440:Ro04_G08549,Ro04_G08550,Ro04_G08551 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA441:Ro04_G09298,Ro04_G36630,Ro04_G09296 | AT1G60710 | ATB2; ATB2; oxidoreductase | GO:0016491|oxidoreductase activity;GO:0046686|response to cadmium ion | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA444:Ro04_G12916,Ro04_G12918,Ro04_G12919 | AT1G03220 | extracellular dermal glycoprotein, putative / EDGP, putative | GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0009505|plant-type cell wall;GO:0016020|membrane;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA445:Ro04_G13305,Ro04_G36654,Ro04_G36656 | AT1G29080 | peptidase C1A papain family protein | GO:0006508|proteolysis;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA447:Ro04_G13963,Ro04_G13961,Ro04_G36994 | AT4G29890 | choline monooxygenase, putative (CMO-like) | GO:0006725|cellular aromatic compound metabolic process;GO:0009507|chloroplast;GO:0051537|2 iron, 2 sulfur cluster binding;GO:0005506|iron ion binding;GO:0016491|oxidoreductase activity;GO:0055114|oxidation reduction;GO:0009055|electron carrier activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA448:Ro04_G14566,Ro04_G14567,Ro04_G14568 | AT5G56420||AT5G18780 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA449:Ro04_G15615,Ro04_G15612,Ro04_G08526 | AT1G25270 | LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). | GO:0016020|membrane;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA452:Ro04_G18053,Ro04_G36374,Ro04_G18056 | AT1G19715 | jacalin lectin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA453:Ro04_G18276,Ro04_G18277,Ro04_G37024 | AT1G15125||AT5G38100||AT3G26560 | methyltransferase-related||S-adenosylmethionine-dependent methyltransferase/ methyltransferase||ATP-dependent RNA helicase, putative | GO:0008026|ATP-dependent helicase activity;GO:0008757|S-adenosylmethionine-dependent methyltransferase activity;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0003723|RNA binding;GO:0004004|ATP-dependent RNA helicase activity;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0005829|cytosol;GO:0008168|methyltransferase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA454:Ro04_G19828,Ro04_G19831,Ro04_G19834 | AT5G15660 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA455:Ro04_G19942,Ro04_G19944,Ro04_G18030 | AT3G06620||AT1G67890 | protein kinase family protein | GO:0006468|protein amino acid phosphorylation;GO:0004712|protein serine/threonine/tyrosine kinase activity;GO:0006355|regulation of transcription, DNA-dependent;GO:0007165|signal transduction;GO:0016301|kinase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA457:Ro04_G22816,Ro04_G22817,Ro04_G22818 | AT5G06020||AT5G06030||AT5G12060 | self-incompatibility protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA459:Ro04_G23390,Ro04_G23389,Ro04_G17414 | AT4G22660 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA460:Ro04_G24703,Ro04_G19456,Ro04_G36256 | AT1G59960 | aldo/keto reductase, putative | GO:0016491|oxidoreductase activity;GO:0009651|response to salt stress | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA461:Ro04_G24817,Ro04_G24815,Ro04_G36904 | AT3G23280 | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0006499|N-terminal protein myristoylation | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA462:Ro04_G36171,Ro04_G00062,Ro04_G00061 | AT2G02990||AT1G14220 | RNS1, ATRNS1; RNS1 (RIBONUCLEASE 1); endoribonuclease/ ribonuclease||ribonuclease T2 family protein | GO:0005576|extracellular region;GO:0007568|aging;GO:0009718|anthocyanin biosynthetic process;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0006499|N-terminal protein myristoylation;GO:0033897|ribonuclease T2 activity;GO:0003723|RNA binding;GO:0016036|cellular response to phosphate starvation;GO:0004540|ribonuclease activity;GO:0009611|response to wounding;GO:0004521|endoribonuclease activity;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA465:Ro04_G36351,Ro04_G21519,Ro04_G36341 | AT3G53480||AT4G15236 | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding||PDR9, ATPDR9, ABCG37; PDR9 (PLEIOTROPIC DRUG RESISTANCE 9); ATPase, coupled to transmembrane movement of substances | GO:0006855|drug transmembrane transport;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0016887|ATPase activity;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA466:Ro04_G36381,Ro04_G36383,Ro04_G36380 | AT3G06860 | MFP2, ATMFP2; MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase | GO:0005730|nucleolus;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA467:Ro04_G36473,Ro04_G14563,Ro04_G36475 | AT1G31690||AT4G14940||AT1G31710 | ATAO1; ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1); amine oxidase/ copper ion binding||copper amine oxidase, putative||amine oxidase/ copper ion binding / quinone binding | GO:0009834|secondary cell wall biogenesis;GO:0048038|quinone binding;GO:0012505|endomembrane system;GO:0005507|copper ion binding;GO:0008131|amine oxidase activity;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA468:Ro04_G36481,Ro04_G36480,Ro04_G21159 | AT5G16780 | DOT2, MDF; DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2) | GO:0010087|phloem or xylem histogenesis;GO:0003674|molecular_function;GO:0048364|root development;GO:0010305|leaf vascular tissue pattern formation;GO:0005730|nucleolus;GO:0010588|cotyledon vascular tissue pattern formation;GO:0009933|meristem structural organization;GO:0009908|flower development;GO:0005634|nucleus;GO:0048366|leaf development;GO:0048367|shoot development;GO:0048528|post-embryonic root development | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA471:Ro04_G36891,Ro04_G12743,Ro04_G12738 | AT4G13440 | calcium-binding EF hand family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0005509|calcium ion binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA472:Ro05_G03231,Ro05_G03232,Ro05_G03233 | AT5G62480 | ATGSTU9, GST14, GST14B; ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9); glutathione transferase | GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0009407|toxin catabolic process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA473:Ro05_G03460,Ro05_G03464,Ro05_G16277 | AT3G24780||AT5G13210 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13210.1); Has 276 Blast hits to 231 proteins in 34 species: Archae - 0; Bacteria - 26; Metazoa - 5; Fungi - 23; Plants - 46; Viruses - 15; Other Eukaryotes - 161 (source: NCBI BLink).||CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24780.1); Has 250 Blast hits to 233 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 23; Plants - 45; Viruses - 15; Other Eukaryotes - 159 (source: NCBI BLink). | ;GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0008150|biological_process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA474:Ro05_G07250,Ro05_G30870,Ro05_G07260 | AT1G13570 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA475:Ro05_G07306,Ro05_G30887,Ro05_G30886 | AT1G47710||AT5G47010 | UPF1, LBA1, ATUPF1; LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase||serpin, putative / serine protease inhibitor, putative | GO:0009744|response to sucrose stimulus;GO:0000184|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;GO:0016246|RNA interference;GO:0003724|RNA helicase activity;GO:0010182|sugar mediated signaling pathway;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0003677|DNA binding;GO:0004867|serine-type endopeptidase inhibitor activity;GO:0004869|cysteine-type endopeptidase inhibitor activity;GO:0008150|biological_process;GO:0005524|ATP binding;GO:0016787|hydrolase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA476:Ro05_G09343,Ro05_G09346,Ro05_G09348 | AT5G64260||AT4G08950 | EXL2; EXL2 (EXORDIUM LIKE 2)||EXO; EXO (EXORDIUM) | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0009505|plant-type cell wall;GO:0009741|response to brassinosteroid stimulus;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA480:Ro05_G12579,Ro05_G12577,Ro05_G12576 | AT1G72060 | serine-type endopeptidase inhibitor | GO:0006979|response to oxidative stress;GO:0012505|endomembrane system;GO:0004867|serine-type endopeptidase inhibitor activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA483:Ro05_G14069,Ro05_G14075,Ro05_G14076 | AT1G72160 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | GO:0006810|transport;GO:0005886|plasma membrane;GO:0005215|transporter activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA484:Ro05_G14258,Ro05_G14262,Ro05_G30798 | AT4G22840||AT4G22830 | unknown protein||bile acid:sodium symporter family protein | GO:0009507|chloroplast;GO:0016020|membrane;GO:0008508|bile acid:sodium symporter activity;GO:0005215|transporter activity;GO:0006814|sodium ion transport | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA485:Ro05_G14272,Ro05_G13044,Ro05_G08565 | AT1G74250 | DNAJ heat shock N-terminal domain-containing protein | GO:0006457|protein folding;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0005622|intracellular;GO:0031072|heat shock protein binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA489:Ro05_G22454,Ro05_G26898,Ro05_G26897 | AT4G09960||AT1G71692 | AGL12, XAL1; AGL12 (AGAMOUS-LIKE 12); transcription factor||STK, AGL11; STK (SEEDSTICK); protein binding / transcription factor | GO:0048440|carpel development;GO:0005515|protein binding;GO:0003700|transcription factor activity;GO:0048481|ovule development;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA491:Ro05_G22912,Ro05_G27520,Ro05_G30964 | AT1G32090 | early-responsive to dehydration protein-related / ERD protein-related | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA493:Ro05_G26903,Ro05_G26902,Ro05_G26901 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA494:Ro05_G27158,Ro05_G31404,Ro05_G31403 | AT1G64790||AT1G52360 | binding||coatomer protein complex, subunit beta 2 (beta prime), putative | GO:0006886|intracellular protein transport;GO:0005488|binding;GO:0030126|COPI vesicle coat;GO:0005515|protein binding;GO:0005198|structural molecule activity;GO:0005634|nucleus;GO:0016192|vesicle-mediated transport;GO:0016020|membrane;GO:0030117|membrane coat;GO:0005829|cytosol | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA495:Ro05_G30609,Ro05_G30614,Ro05_G30608 | AT5G50760 | auxin-responsive family protein | GO:0003674|molecular_function;GO:0009733|response to auxin stimulus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA496:Ro05_G30639,Ro05_G30636,Ro05_G30635 | AT3G48270||AT3G48310 | CYP71A22; CYP71A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP71A26; CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0019825|oxygen binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA498:Ro05_G30794,Ro05_G30795,Ro05_G14264 | AT4G27190 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005575|cellular_component;GO:0006952|defense response;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA500:Ro05_G30850,Ro05_G30862,Ro05_G30866 | AT3G14660||AT5G24910||AT5G24900 | CYP714A2; CYP714A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP72A13; CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP714A1; CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA503:Ro05_G31127,Ro05_G31128,Ro05_G16069 | AT5G49730||AT5G49740 | ATFRO7, FRO7; ATFRO7 (FERRIC REDUCTION OXIDASE 7); ferric-chelate reductase/ oxidoreductase||ATFRO6, FRO6; ATFRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase | GO:0000293|ferric-chelate reductase activity;GO:0009507|chloroplast;GO:0016491|oxidoreductase activity;GO:0005886|plasma membrane;GO:0009767|photosynthetic electron transport chain;GO:0009416|response to light stimulus;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA507:Ro05_G31389,Ro05_G31390,Ro05_G27892 | AT3G52470 | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein | GO:0008150|biological_process;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA510:Ro05_G31593,Ro05_G31595,Ro05_G31594 | AT5G53130||AT2G46450 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC12, CNGC12; ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0005242|inward rectifier potassium channel activity;GO:0009620|response to fungus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA513:Ro05_G31656,Ro05_G31659,Ro05_G31688 | AT5G04700||AT3G18670 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).||ankyrin repeat family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0005515|protein binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA515:Ro06_G05637,Ro06_G05634,Ro06_G28936 | AT1G62310||AT1G07080 | transcription factor jumonji (jmjC) domain-containing protein||gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein | GO:0003824|catalytic activity;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0003700|transcription factor activity;GO:0008150|biological_process;GO:0005773|vacuole | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA516:Ro06_G06732,Ro06_G28613,Ro06_G28615 | AT2G21110||AT2G21100 | disease resistance-responsive protein-related / dirigent protein-related||disease resistance-responsive family protein | GO:0009807|lignan biosynthetic process;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0006952|defense response | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA517:Ro06_G08179,Ro06_G08178,Ro06_G08175 | AT1G01300 | aspartyl protease family protein | GO:0006508|proteolysis;GO:0016020|membrane;GO:0009505|plant-type cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA519:Ro06_G08497,Ro06_G08501,Ro06_G08502 | AT1G51190 | PLT2; PLT2 (PLETHORA 2); transcription factor | GO:0007389|pattern specification process;GO:0048364|root development;GO:0019827|stem cell maintenance;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA521:Ro06_G09891,Ro06_G09893,Ro06_G09895 | AT2G37770||AT2G37790 | aldo/keto reductase family protein | GO:0016491|oxidoreductase activity;GO:0005634|nucleus;GO:0055114|oxidation reduction;GO:0005829|cytosol | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA522:Ro06_G09976,Ro06_G09979,Ro06_G09981 | AT2G20900||AT5G45490 | DGK5, ATDGK5; diacylglycerol kinase, putative||disease resistance protein-related | GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;GO:0004143|diacylglycerol kinase activity;GO:0006915|apoptosis;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA523:Ro06_G11288,Ro06_G28767,Ro06_G28768 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA525:Ro06_G11854,Ro06_G11853,Ro06_G11851 | AT2G36430||AT3G44710 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA526:Ro06_G12350,Ro06_G12349,Ro06_G15961 | AT1G10340 | ankyrin repeat family protein | GO:0005515|protein binding;GO:0005575|cellular_component;GO:0008150|biological_process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA527:Ro06_G12387,Ro06_G12384,Ro06_G12383 | AT2G25737 | unknown protein | GO:0016021|integral to membrane;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA528:Ro06_G13162,Ro06_G29207,Ro06_G13161 | AT2G27880 | AGO5; AGO5 (ARGONAUTE 5); nucleic acid binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA529:Ro06_G13170,Ro06_G13169,Ro06_G17239 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA534:Ro06_G17311,Ro06_G28579,Ro06_G28580 | AT5G48160||AT3G07780 | OBE2; OBE2 (OBERON2); protein binding / zinc ion binding||OBE1; OBE1 (OBERON1); protein binding / zinc ion binding | GO:0010492|maintenance of shoot apical meristem identity;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0010078|maintenance of root meristem identity;GO:0005634|nucleus;GO:0010468|regulation of gene expression;GO:0010071|root meristem specification;GO:0009793|embryonic development ending in seed dormancy | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA536:Ro06_G20163,Ro06_G27289,Ro06_G27835 | AT3G28875 | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA537:Ro06_G21235,Ro06_G21238,Ro06_G24265 | AT2G28120 | nodulin family protein | GO:0005886|plasma membrane;GO:0006499|N-terminal protein myristoylation | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA538:Ro06_G22462,Ro06_G28594,Ro06_G28591 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA539:Ro06_G24344,Ro06_G23568,Ro06_G23567 | AT3G57380||AT2G41640 | transferase, transferring glycosyl groups | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016757|transferase activity, transferring glycosyl groups | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA541:Ro06_G24986,Ro06_G24988,Ro06_G24990 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA543:Ro06_G26539,Ro06_G15722,Ro06_G28475 | AT3G14360 | lipase class 3 family protein | GO:0005575|cellular_component;GO:0004806|triglyceride lipase activity;GO:0006629|lipid metabolic process | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA544:Ro06_G27264,Ro06_G26599,Ro06_G26600 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA545:Ro06_G27769,Ro06_G11040,Ro06_G11036 | AT5G03560 | nucleobase:cation symporter | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0015391|nucleobase:cation symporter activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA550:Ro06_G28358,Ro06_G28367,Ro06_G28368 | AT4G25150 | acid phosphatase, putative | GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA551:Ro06_G28478,Ro06_G28477,Ro06_G28480 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA554:Ro06_G28581,Ro06_G28582,Ro06_G28585 | AT4G12010 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA555:Ro06_G28590,Ro06_G28603,Ro06_G06671 | AT5G14180 | MPL1; MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1); catalytic | GO:0012505|endomembrane system;GO:0006114|glycerol biosynthetic process;GO:0006629|lipid metabolic process;GO:0003824|catalytic activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA556:Ro06_G28623,Ro06_G28624,Ro06_G28622 | AT3G26922||AT4G00160 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2).||F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA559:Ro06_G28770,Ro06_G28771,Ro06_G11287 | AT1G08750 | GPI-anchor transamidase, putative | GO:0006508|proteolysis;GO:0003923|GPI-anchor transamidase activity;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA560:Ro06_G28773,Ro06_G28774,Ro06_G28775 | AT3G26930||AT5G56430||AT3G28410 | F-box family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13965.1); Has 678 Blast hits to 661 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA561:Ro06_G28777,Ro06_G28776,Ro06_G28780 | AT1G66910||AT1G66920 | protein kinase, putative||serine/threonine protein kinase, putative | GO:0004674|protein serine/threonine kinase activity;GO:0005524|ATP binding;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA562:Ro06_G28882,Ro06_G28881,Ro06_G28883 | AT4G18930||AT4G18940 | cyclic phosphodiesterase, putative||cyclic phosphodiesterase | GO:0003824|catalytic activity;GO:0005622|intracellular;GO:0006388|tRNA splicing, via endonucleolytic cleavage and ligation;GO:0016070|RNA metabolic process;GO:0005737|cytoplasm;GO:0004112|cyclic-nucleotide phosphodiesterase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA564:Ro06_G28906,Ro06_G28898,Ro06_G28897 | AT3G62020||AT1G09560 | GLP5; GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir||GLP10; GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir | GO:0045735|nutrient reservoir activity;GO:0030145|manganese ion binding;GO:0008150|biological_process;GO:0005634|nucleus;GO:0009409|response to cold;GO:0009505|plant-type cell wall;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA569:Ro06_G29340,Ro06_G29341,Ro06_G29342 | AT3G21090||AT1G51460 | ABC transporter family protein | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0006810|transport;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA571:Ro07_G04344,Ro07_G33326,Ro07_G33327 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA572:Ro07_G04345,Ro07_G33331,Ro07_G33332 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA573:Ro07_G04347,Ro07_G33328,Ro07_G33329 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA574:Ro07_G04752,Ro07_G04751,Ro07_G34590 | AT2G13620||AT2G28180 | ATCHX15, CHX15; ATCHX15; monovalent cation:proton antiporter/ sodium:hydrogen antiporter||ATCHX8, CHX8, CHX08; ATCHX8; monovalent cation:proton antiporter/ sodium:hydrogen antiporter | GO:0005451|monovalent cation:hydrogen antiporter activity;GO:0016021|integral to membrane;GO:0005739|mitochondrion;GO:0006812|cation transport;GO:0015385|sodium:hydrogen antiporter activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA576:Ro07_G06577,Ro07_G06579,Ro07_G06594 | AT1G05160 | CYP88A3, ATKAO1, KAO1; CYP88A3 (CYTOCHROME P450 88 A3); ent-kaurenoate oxidase/ oxygen binding | GO:0009686|gibberellin biosynthetic process;GO:0051777|ent-kaurenoate oxidase activity;GO:0019825|oxygen binding;GO:0005783|endoplasmic reticulum | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA577:Ro07_G07750,Ro07_G07751,Ro07_G07756 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA578:Ro07_G11979,Ro07_G11978,Ro07_G34505 | AT5G04530 | KCS19; KCS19 (3-KETOACYL-COA SYNTHASE 19); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups | GO:0008415|acyltransferase activity;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0009409|response to cold;GO:0009416|response to light stimulus;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA580:Ro07_G12280,Ro07_G12288,Ro07_G12290 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA581:Ro07_G15008,Ro07_G15011,Ro07_G15012 | AT5G06570 | hydrolase | GO:0008152|metabolic process;GO:0016787|hydrolase activity;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA582:Ro07_G15533,Ro07_G33871,Ro07_G33876 | AT1G18210 | calcium-binding protein, putative | GO:0005886|plasma membrane;GO:0005773|vacuole | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA583:Ro07_G15534,Ro07_G33866,Ro07_G33865 | AT3G03570 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607); BEST Arabidopsis thaliana protein match is: signal transducer (TAIR:AT4G40050.1); Has 153 Blast hits to 150 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005829|cytosol | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA584:Ro07_G15537,Ro07_G33861,Ro07_G33873 | AT5G17600 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA585:Ro07_G15732,Ro07_G15734,Ro07_G21517 | AT2G24740||AT2G22740||AT2G35160 | SDG21, SUVH8; SDG21 (SET DOMAIN GROUP 21); histone methyltransferase||SUVH6; SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase||SUVH5, SGD9; SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase | GO:0031048|chromatin silencing by small RNA;GO:0010216|maintenance of DNA methylation;GO:0016571|histone methylation;GO:0010200|response to chitin;GO:0010428|methyl-CpNpG binding;GO:0040029|regulation of gene expression, epigenetic;GO:0005634|nucleus;GO:0008327|methyl-CpG binding;GO:0042054|histone methyltransferase activity;GO:0010429|methyl-CpNpN binding;GO:0008168|methyltransferase activity | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA586:Ro07_G16476,Ro07_G16474,Ro07_G34450 | AT3G48880 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA587:Ro07_G17118,Ro07_G34458,Ro07_G17121 | AT2G39200 | MLO12, ATMLO12; MLO12 (MILDEW RESISTANCE LOCUS O 12); calmodulin binding | GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0006952|defense response;GO:0009817|defense response to fungus, incompatible interaction;GO:0008219|cell death;GO:0010150|leaf senescence | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA588:Ro07_G18169,Ro07_G18171,Ro07_G18172 | AT2G39210 | nodulin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA589:Ro07_G18285,Ro07_G33935,Ro07_G33933 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA590:Ro07_G18772,Ro07_G18770,Ro07_G18769 | AT5G29000 | myb family transcription factor | GO:0009507|chloroplast;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0005634|nucleus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA591:Ro07_G20220,Ro07_G20219,Ro07_G20218 | AT4G14225||AT4G22820 | zinc finger (AN1-like) family protein | GO:0008150|biological_process;GO:0003677|DNA binding;GO:0005575|cellular_component;GO:0008270|zinc ion binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA592:Ro07_G20429,Ro07_G20426,Ro07_G33252 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA595:Ro07_G21680,Ro07_G13238,Ro07_G13239 | AT5G12380||AT2G38750||AT2G38760 | ANNAT3; ANNAT3 (ANNEXIN ARABIDOPSIS 3); calcium ion binding / calcium-dependent phospholipid binding||annexin, putative||ANNAT4; ANNAT4 (ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding | GO:0009414|response to water deprivation;GO:0005544|calcium-dependent phospholipid binding;GO:0009986|cell surface;GO:0009651|response to salt stress;GO:0009408|response to heat;GO:0009737|response to abscisic acid stimulus;GO:0009409|response to cold;GO:0005509|calcium ion binding;GO:0006970|response to osmotic stress;GO:0005773|vacuole | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA596:Ro07_G22113,Ro07_G34270,Ro07_G34268 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA598:Ro07_G25154,Ro07_G25158,Ro07_G19412 | AT3G55430||AT2G16230 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds||glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative | GO:0003824|catalytic activity;GO:0012505|endomembrane system;GO:0043169|cation binding;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA599:Ro07_G25293,Ro07_G21421,Ro07_G21422 | AT2G44840 | ATERF13, EREBP, ERF13; ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor | GO:0010200|response to chitin;GO:0003677|DNA binding;GO:0009873|ethylene mediated signaling pathway;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA600:Ro07_G25807,Ro07_G26531,Ro07_G33654 | AT1G80070 | SUS2, EMB33, EMB177, EMB14; SUS2 (ABNORMAL SUSPENSOR 2) | GO:0009507|chloroplast;GO:0016020|membrane;GO:0000398|nuclear mRNA splicing, via spliceosome | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA604:Ro07_G33254,Ro07_G33253,Ro07_G20424 | AT1G01020 | ARV1; ARV1 | GO:0003674|molecular_function;GO:0006665|sphingolipid metabolic process;GO:0016125|sterol metabolic process;GO:0005783|endoplasmic reticulum;GO:0016020|membrane | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA605:Ro07_G33290,Ro07_G33292,Ro07_G33288 | AT2G46440||AT5G14870 | CNGC18, ATCNGC18; CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18); calmodulin binding / cyclic nucleotide binding / ion channel||ATCNGC11, CNGC11; ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0016324|apical plasma membrane;GO:0009860|pollen tube growth;GO:0006874|cellular calcium ion homeostasis;GO:0005516|calmodulin binding;GO:0005261|cation channel activity;GO:0030551|cyclic nucleotide binding;GO:0016020|membrane;GO:0009620|response to fungus | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA606:Ro07_G33323,Ro07_G33324,Ro07_G04349 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA609:Ro07_G33481,Ro07_G27490,Ro07_G27491 | AT3G60730||AT2G45220 | pectinesterase family protein | GO:0012505|endomembrane system;GO:0004857|enzyme inhibitor activity;GO:0030599|pectinesterase activity;GO:0009505|plant-type cell wall;GO:0042545|cell wall modification;GO:0016020|membrane;GO:0005618|cell wall | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA611:Ro07_G33529,Ro07_G33531,Ro07_G33530 | AT3G02340 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA613:Ro07_G33576,Ro07_G33575,Ro07_G33577 | AT3G14470 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA614:Ro07_G33608,Ro07_G33603,Ro07_G33604 | AT5G45060||AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA618:Ro07_G33848,Ro07_G33846,Ro07_G33847 | AT1G07810 | ECA1, ATECA1, ACA3; ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase | GO:0046686|response to cadmium ion;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0010042|response to manganese ion;GO:0005783|endoplasmic reticulum;GO:0005388|calcium-transporting ATPase activity;GO:0006828|manganese ion transport;GO:0005789|endoplasmic reticulum membrane;GO:0030026|cellular manganese ion homeostasis | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA624:Ro07_G34363,Ro07_G34362,Ro07_G34365 | AT3G14470||AT3G14460 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA625:Ro07_G34393,Ro07_G34394,Ro07_G12989 | - | - | - | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA626:Ro07_G34461,Ro07_G34465,Ro07_G17122 | AT3G12090 | TET6; TET6 (TETRASPANIN6) | GO:0003674|molecular_function;GO:0016021|integral to membrane;GO:0012505|endomembrane system;GO:0007568|aging | - | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA640:Ro01_G01050,Ro01_G01049 | - | - | - | Ro04_G21006 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA643:Ro01_G01185,Ro01_G29640 | AT4G38660||AT4G36010||AT1G20030 | thaumatin, putative||pathogenesis-related thaumatin family protein | GO:0003674|molecular_function;GO:0051707|response to other organism;GO:0031225|anchored to membrane | Ro02_G02232 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA645:Ro01_G01243,Ro01_G01242 | AT2G17200 | ubiquitin family protein | GO:0003674|molecular_function;GO:0006464|protein modification process | Ro01_G01283 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA658:Ro01_G05001,Ro01_G29470 | AT2G43880||AT3G59850||AT2G43870 | polygalacturonase, putative / pectinase, putative | GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0005975|carbohydrate metabolic process | Ro01_G10736 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA661:Ro01_G05053,Ro01_G27941 | AT5G57950 | 26S proteasome regulatory subunit, putative | GO:0005515|protein binding;GO:0005838|proteasome regulatory particle | Ro03_G32648 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA663:Ro01_G05143,Ro01_G05149 | AT5G35080 | protein binding | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0008150|biological_process | Ro01_G05144 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA666:Ro01_G07627,Ro01_G29530 | AT1G31430||AT1G08070||AT1G47580 | pentatricopeptide (PPR) repeat-containing protein||lipoyltransferase, putative | ;GO:0003674|molecular_function;GO:0031425|chloroplast RNA processing;GO:0017118|lipoyltransferase activity;GO:0003824|catalytic activity;GO:0006464|protein modification process;GO:0005575|cellular_component | Ro03_G32524 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA668:Ro01_G07724,Ro01_G07726 | AT2G02360||AT2G02240 | MEE66; MEE66 (maternal effect embryo arrest 66)||AtPP2-B10; AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0030246|carbohydrate binding;GO:0009793|embryonic development ending in seed dormancy | Ro01_G11669 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA677:Ro01_G11272,Ro01_G11270 | AT3G15580||AT3G06420 | ATG8I, APG8H; APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule binding||ATG8H; ATG8H (autophagy 8h); microtubule binding | GO:0005775|vacuolar lumen;GO:0008017|microtubule binding;GO:0019776|Atg8 ligase activity;GO:0019779|APG8 activating enzyme activity;GO:0006914|autophagy;GO:0005737|cytoplasm | Ro04_G19315 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA684:Ro01_G14969,Ro01_G14965 | AT1G07615 | GTP binding | GO:0005525|GTP binding;GO:0005622|intracellular | Ro03_G31975 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA697:Ro01_G21073,Ro01_G29511 | AT5G57610||AT2G35050 | protein kinase family protein | GO:0004712|protein serine/threonine/tyrosine kinase activity;GO:0005575|cellular_component;GO:0006468|protein amino acid phosphorylation;GO:0004672|protein kinase activity | Ro04_G36951 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA703:Ro01_G23139,Ro01_G30055 | AT1G10200 | WLIM1; WLIM1; transcription factor/ zinc ion binding | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003700|transcription factor activity;GO:0008270|zinc ion binding | Ro01_G27137 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA715:Ro01_G26557,Ro01_G26555 | AT1G05300||AT2G32270 | ZIP5; ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter||ZIP3; ZIP3; zinc ion transmembrane transporter | GO:0005385|zinc ion transmembrane transporter activity;GO:0008324|cation transmembrane transporter activity;GO:0046873|metal ion transmembrane transporter activity;GO:0012505|endomembrane system;GO:0006829|zinc ion transport;GO:0016021|integral to membrane;GO:0006812|cation transport;GO:0016020|membrane | Ro06_G08421 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA725:Ro01_G29513,Ro01_G29515 | - | - | - | Ro01_G29922 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA726:Ro01_G29528,Ro01_G07645 | AT5G19950 | unknown protein | GO:0005739|mitochondrion | Ro01_G24768 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA732:Ro01_G29584,Ro01_G02915 | AT2G19480 | NFA02, NFA2, NAP1;2; NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding | GO:0005488|binding | Ro03_G27224 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA749:Ro01_G29835,Ro01_G29837 | AT3G48280 | CYP71A25; CYP71A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0019825|oxygen binding | Ro05_G30875 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA762:Ro01_G30019,Ro01_G30020 | AT5G42440||AT3G03920 | Gar1 RNA-binding region family protein||protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005730|nucleolus;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0006364|rRNA processing;GO:0019843|rRNA binding | Ro02_G25988 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA763:Ro01_G30023,Ro01_G05362 | - | - | - | Ro06_G16859 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA767:Ro01_G30044,Ro01_G30043 | AT3G56780||AT5G56420||AT4G10400 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro06_G28893 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA778:Ro01_G30248,Ro01_G30247 | AT5G03795 | LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G07620.1); Has 866 Blast hits to 860 proteins in 87 species: Archae - 0; Bacteria - 9; Metazoa - 265; Fungi - 4; Plants - 504; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). | GO:0016020|membrane | Ro02_G36081 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA782:Ro01_G30282,Ro01_G30281 | AT1G75820 | CLV1, FAS3, FLO5; CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0030154|cell differentiation;GO:0004702|receptor signaling protein serine/threonine kinase activity;GO:0016021|integral to membrane;GO:0006468|protein amino acid phosphorylation;GO:0007172|signal complex assembly;GO:0005524|ATP binding;GO:0016020|membrane;GO:0009934|regulation of meristem structural organization | Ro02_G34850 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA787:Ro01_G30388,Ro01_G26168 | - | - | - | Ro01_G30147 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA789:Ro01_G30425,Ro01_G30426 | - | - | - | Ro01_G20027 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA795:Ro01_G30469,Ro01_G21581 | ATCG01100 | NDHA; NADH dehydrogenase ND1 | GO:0016020|membrane | Ro04_G37100 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA803:Ro02_G00589,Ro02_G00587 | AT5G67090||AT5G67360 | subtilase family protein||ARA12; ARA12; serine-type endopeptidase | GO:0006508|proteolysis;GO:0005576|extracellular region;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0009505|plant-type cell wall;GO:0010214|seed coat development;GO:0048359|mucilage metabolic process during seed coat development;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity;GO:0005618|cell wall | Ro07_G18160 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA807:Ro02_G01380,Ro02_G01379 | - | - | - | Ro05_G14450 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA809:Ro02_G01493,Ro02_G01492 | AT2G01170 | BAT1; BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1); amino acid transmembrane transporter | GO:0006865|amino acid transport;GO:0015189|L-lysine transmembrane transporter activity;GO:0006810|transport;GO:0005313|L-glutamate transmembrane transporter activity;GO:0016021|integral to membrane;GO:0015180|L-alanine transmembrane transporter activity;GO:0015181|arginine transmembrane transporter activity;GO:0015171|amino acid transmembrane transporter activity;GO:0016020|membrane | Ro01_G30270 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA813:Ro02_G02216,Ro02_G02213 | AT1G20110||AT1G75880 | family II extracellular lipase 1 (EXL1)||zinc finger (FYVE type) family protein | GO:0008415|acyltransferase activity;GO:0005576|extracellular region;GO:0016298|lipase activity;GO:0035091|phosphoinositide binding;GO:0004091|carboxylesterase activity;GO:0019953|sexual reproduction;GO:0007165|signal transduction | Ro06_G21257 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA817:Ro02_G03098,Ro02_G03110 | AT3G57710||AT3G57720 | protein kinase, putative||protein kinase family protein | GO:0016301|kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | Ro02_G23736 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA822:Ro02_G03992,Ro02_G35115 | AT5G64560 | magnesium transporter CorA-like family protein (MRS2-2) | GO:0030001|metal ion transport;GO:0015095|magnesium ion transmembrane transporter activity;GO:0016020|membrane;GO:0046873|metal ion transmembrane transporter activity | Ro04_G20545 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA836:Ro02_G06645,Ro02_G35191 | AT4G13200 | unknown protein | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0010287|plastoglobule;GO:0009579|thylakoid;GO:0008150|biological_process;GO:0009535|chloroplast thylakoid membrane | Ro02_G35161 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA857:Ro02_G10983,Ro02_G10981 | AT3G07410||AT2G31680 | AtRABA5b; AtRABA5b (Arabidopsis Rab GTPase homolog A5b); GTP binding||AtRABA5d; AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding | GO:0005886|plasma membrane;GO:0005525|GTP binding;GO:0015031|protein transport | Ro04_G36674 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA858:Ro02_G12684,Ro02_G12681 | AT1G20610||AT1G76310 | CYCB2;3; CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator||CYCB2;4; CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator | GO:0005634|nucleus | Ro04_G15928 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA862:Ro02_G13094,Ro02_G35409 | AT1G43170||AT1G61580 | RPL3B, ARP2; RPL3B (R-PROTEIN L3 B); structural constituent of ribosome||ARP1, emb2207, RPL3A; ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome | GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0005618|cell wall;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0006412|translation;GO:0005840|ribosome;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane;GO:0009793|embryonic development ending in seed dormancy;GO:0005773|vacuole | Ro05_G26401 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA869:Ro02_G14792,Ro02_G34988 | AT1G52820||AT4G32551||AT1G52800 | oxidoreductase, 2OG-Fe(II) oxygenase family protein||LUG, RON2; LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor||2-oxoglutarate-dependent dioxygenase, putative | GO:0016491|oxidoreductase activity;GO:0016481|negative regulation of transcription;GO:0005515|protein binding;GO:0009908|flower development;GO:0005634|nucleus;GO:0005575|cellular_component;GO:0046982|protein heterodimerization activity;GO:0016564|transcription repressor activity | Ro02_G17690 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA875:Ro02_G15476,Ro02_G35752 | AT4G39080||AT2G21410 | VHA-A2; VHA-A2 (VACUOLAR PROTON ATPASE A2); ATPase||VHA-A3; VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase | GO:0009507|chloroplast;GO:0031669|cellular response to nutrient levels;GO:0015986|ATP synthesis coupled proton transport;GO:0000325|plant-type vacuole;GO:0005886|plasma membrane;GO:0016887|ATPase activity;GO:0009678|hydrogen-translocating pyrophosphatase activity;GO:0005739|mitochondrion;GO:0009705|plant-type vacuole membrane;GO:0005774|vacuolar membrane;GO:0016020|membrane;GO:0005773|vacuole | Ro02_G02298 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA879:Ro02_G16409,Ro02_G16410 | AT3G19940 | sugar transporter, putative | GO:0005351|sugar:hydrogen symporter activity;GO:0006810|transport;GO:0055085|transmembrane transport;GO:0016021|integral to membrane;GO:0015144|carbohydrate transmembrane transporter activity;GO:0016020|membrane | Ro04_G36962 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA890:Ro02_G20583,Ro02_G21497 | AT5G06240 | emb2735; emb2735 (embryo defective 2735) | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0009793|embryonic development ending in seed dormancy | Ro05_G17799 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA896:Ro02_G22005,Ro02_G35605 | AT3G16520 | UGT88A1; UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | Ro07_G34696 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA898:Ro02_G22269,Ro02_G35211 | AT4G31940||AT3G25180 | CYP82G1; CYP82G1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP82C4; CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | Ro01_G29954 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA910:Ro02_G25572,Ro02_G25574 | AT4G19975 | - | - | Ro05_G03678 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA913:Ro02_G26638,Ro02_G23499 | AT3G12290 | tetrahydrofolate dehydrogenase/cyclohydrolase, putative | GO:0009507|chloroplast;GO:0005488|binding;GO:0009396|folic acid and derivative biosynthetic process;GO:0003824|catalytic activity;GO:0008152|metabolic process | Ro02_G07047 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA916:Ro02_G34888,Ro02_G00724 | AT5G11520 | ASP3, YLS4; ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate:2-oxoglutarate aminotransferase | GO:0016020|membrane;GO:0009536|plastid;GO:0010150|leaf senescence;GO:0004069|L-aspartate:2-oxoglutarate aminotransferase activity;GO:0006807|nitrogen compound metabolic process;GO:0005777|peroxisome | Ro04_G12447 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA921:Ro02_G34973,Ro02_G34967 | AT4G00960||AT4G05200||AT4G21230 | protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | Ro02_G34972 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA922:Ro02_G34977,Ro02_G05722 | AT4G31130 | unknown protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | Ro06_G18304 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA931:Ro02_G35160,Ro02_G35159 | AT2G39830||AT4G36860 | DAR2; DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding||zinc ion binding | GO:0009507|chloroplast;GO:0008270|zinc ion binding;GO:0005886|plasma membrane | Ro02_G27638 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA939:Ro02_G35271,Ro02_G12692 | AT4G38270||AT4G38350 | GAUT3; GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups||hedgehog receptor | GO:0005886|plasma membrane;GO:0008158|hedgehog receptor activity;GO:0016020|membrane;GO:0005773|vacuole | Ro02_G19697 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA941:Ro02_G35311,Ro02_G35310 | AT2G36690||AT3G60290 | oxidoreductase, 2OG-Fe(II) oxygenase family protein||oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | GO:0016491|oxidoreductase activity;GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0016706|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | Ro01_G29585 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA943:Ro02_G35324,Ro02_G26680 | AT4G31980 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | Ro03_G33056 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA946:Ro02_G35422,Ro02_G21907 | - | - | - | Ro02_G25090 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA949:Ro02_G35507,Ro02_G16602 | - | - | - | Ro02_G35516 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA958:Ro02_G35657,Ro02_G21491 | AT5G35810||AT3G18670 | ankyrin repeat family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G54070.1); Has 446 Blast hits to 440 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0005515|protein binding;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | Ro01_G12216 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA977:Ro02_G36045,Ro02_G25370 | AT1G63270 | ATNAP10; ATNAP10; transporter | GO:0006810|transport;GO:0005215|transporter activity | Ro05_G20550 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA979:Ro02_G36070,Ro02_G36069 | AT1G20080||AT2G20990 | SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2; SYTB||SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1; SYTA (SYNAPTOTAGMIN A) | GO:0003674|molecular_function;GO:0006612|protein targeting to membrane;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0016020|membrane;GO:0005773|vacuole | Ro02_G02226 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA982:Ro03_G02062,Ro03_G02063 | AT5G59750||AT5G64300 | ATGCH, GCH, ATRIBA1, RFD1; ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II||riboflavin biosynthesis protein, putative | GO:0009507|chloroplast;GO:0009231|riboflavin biosynthetic process;GO:0008686|3,4-dihydroxy-2-butanone-4-phosphate synthase activity;GO:0003935|GTP cyclohydrolase II activity;GO:0016020|membrane | Ro01_G12238 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA991:Ro03_G04969,Ro03_G32604 | - | - | - | Ro03_G26805 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA994:Ro03_G05264,Ro03_G05263 | AT4G18700||AT5G45820||AT5G25110 | CIPK12, SnRK3.9, ATWL4, WL4; CIPK12 (CBL-INTERACTING PROTEIN KINASE 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||CIPK20, SnRK3.6, PKS18; CIPK20 (CBL-INTERACTING PROTEIN KINASE 20); kinase/ protein serine/threonine kinase||CIPK25, SnRK3.25; CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0050832|defense response to fungus;GO:0009737|response to abscisic acid stimulus;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0005829|cytosol | Ro03_G10082 | 3 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1001:Ro03_G05834,Ro03_G05835 | AT4G20070 | ATAAH; ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase); allantoate deiminase/ metallopeptidase | GO:0010136|ureide catabolic process;GO:0006508|proteolysis;GO:0047652|allantoate deiminase activity;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1002:Ro03_G05859,Ro03_G05861 | AT1G31120||AT2G35060 | KUP11; KUP11; potassium ion transmembrane transporter||KUP10; KUP10; potassium ion transmembrane transporter | GO:0006813|potassium ion transport;GO:0009555|pollen development;GO:0005886|plasma membrane;GO:0015079|potassium ion transmembrane transporter activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1003:Ro03_G05876,Ro03_G27837 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1004:Ro03_G05877,Ro03_G27836 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1005:Ro03_G05896,Ro03_G33165 | AT5G45540 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1006:Ro03_G05946,Ro03_G05945 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1007:Ro03_G06049,Ro03_G06048 | AT1G23120 | major latex protein-related / MLP-related | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0009607|response to biotic stimulus;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1008:Ro03_G06082,Ro03_G06080 | AT2G27830 | FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G22760.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1009:Ro03_G06321,Ro03_G31910 | AT2G30105 | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1011:Ro03_G06531,Ro03_G06530 | AT2G33775 | RALFL19; RALFL19 (ralf-like 19); signal transducer | GO:0007267|cell-cell signaling;GO:0048046|apoplast;GO:0004871|signal transducer activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1012:Ro03_G06539,Ro03_G06538 | AT1G28310||AT5G60200 | Dof-type zinc finger domain-containing protein | GO:0048364|root development;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1013:Ro03_G06547,Ro03_G33113 | AT1G28340 | AtRLP4; AtRLP4 (Receptor Like Protein 4); protein binding | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1015:Ro03_G06556,Ro03_G06555 | AT2G33847 | unknown protein | GO:0009507|chloroplast | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1016:Ro03_G06955,Ro03_G32863 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1017:Ro03_G06969,Ro03_G32892 | AT3G23330 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1018:Ro03_G07485,Ro03_G07484 | AT5G60520 | late embryogenesis abundant protein-related / LEA protein-related | GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1020:Ro03_G08085,Ro03_G08086 | AT5G19760 | dicarboxylate/tricarboxylate carrier (DTC) | GO:0009507|chloroplast;GO:0005743|mitochondrial inner membrane;GO:0005488|binding;GO:0009941|chloroplast envelope;GO:0005886|plasma membrane;GO:0006810|transport;GO:0017077|oxidative phosphorylation uncoupler activity;GO:0006839|mitochondrial transport;GO:0005739|mitochondrion;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1021:Ro03_G08093,Ro03_G08097 | AT1G30470 | SIT4 phosphatase-associated family protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1022:Ro03_G08103,Ro03_G08105 | AT3G13460 | ECT2; ECT2; protein binding | GO:0005737|cytoplasm;GO:0005515|protein binding;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1024:Ro03_G08151,Ro03_G08153 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1025:Ro03_G08716,Ro03_G08718 | AT1G53530 | signal peptidase I family protein | GO:0008236|serine-type peptidase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1026:Ro03_G10045,Ro03_G10042 | AT1G53210 | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | GO:0000325|plant-type vacuole;GO:0005886|plasma membrane;GO:0005509|calcium ion binding;GO:0005774|vacuolar membrane;GO:0016020|membrane;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1027:Ro03_G10051,Ro03_G32765 | AT3G06240||AT3G23880 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1028:Ro03_G10219,Ro03_G33193 | AT4G22320 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1031:Ro03_G10601,Ro03_G13458 | AT4G04670 | Met-10+ like family protein / kelch repeat-containing protein | GO:0031591|wybutosine biosynthetic process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1033:Ro03_G10638,Ro03_G10645 | AT3G18330||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1034:Ro03_G10653,Ro03_G10654 | AT3G10985||AT5G01740 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: SAG20 (SENESCENCE ASSOCIATED GENE 20) (TAIR:AT3G10985.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||SAG20, WI12, ATWI-12; SAG20 (SENESCENCE ASSOCIATED GENE 20) | GO:0003674|molecular_function;GO:0007568|aging;GO:0006950|response to stress;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0009620|response to fungus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1036:Ro03_G10830,Ro03_G32976 | AT5G17760||AT3G50940 | AAA-type ATPase family protein | GO:0000166|nucleotide binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0016887|ATPase activity;GO:0005524|ATP binding;GO:0017111|nucleoside-triphosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1037:Ro03_G10834,Ro03_G10835 | AT3G14290||AT1G16470 | PAB1; PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase||PAE2; PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase | GO:0006511|ubiquitin-dependent protein catabolic process;GO:0022626|cytosolic ribosome;GO:0008233|peptidase activity;GO:0010043|response to zinc ion;GO:0005839|proteasome core complex | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1038:Ro03_G11135,Ro03_G11138 | AT2G36350||AT3G44610 | protein kinase, putative||protein kinase family protein | GO:0009507|chloroplast;GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1039:Ro03_G12093,Ro03_G12095 | AT3G13380||AT1G55610 | BRL3; BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase||BRL1; BRL1 (BRI 1 LIKE); kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1040:Ro03_G12845,Ro03_G32061 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1041:Ro03_G12846,Ro03_G32060 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1042:Ro03_G13091,Ro03_G13092 | AT3G62020 | GLP10; GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir | GO:0045735|nutrient reservoir activity;GO:0030145|manganese ion binding;GO:0008150|biological_process;GO:0009505|plant-type cell wall;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1043:Ro03_G13355,Ro03_G13354 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1045:Ro03_G13416,Ro03_G13415 | AT4G18220||AT4G18210 | purine permease family protein||ATPUP10; ATPUP10; purine transmembrane transporter | GO:0009624|response to nematode;GO:0005345|purine transmembrane transporter activity;GO:0016020|membrane;GO:0006863|purine transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1047:Ro03_G13472,Ro03_G13473 | AT1G59890 | SNL5; SNL5 (SIN3-LIKE 5) | GO:0006355|regulation of transcription, DNA-dependent;GO:0003674|molecular_function;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1048:Ro03_G13475,Ro03_G13478 | AT3G44590 | 60S acidic ribosomal protein P2 (RPP2D) | GO:0006414|translational elongation;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0005634|nucleus;GO:0005840|ribosome;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1049:Ro03_G13476,Ro03_G33190 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1050:Ro03_G13486,Ro03_G33189 | AT4G22030 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1052:Ro03_G13878,Ro03_G32279 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1054:Ro03_G14663,Ro03_G14662 | AT1G15780 | unknown protein | GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1055:Ro03_G14689,Ro03_G14687 | AT1G55850 | ATCSLE1, CSLE1; ATCSLE1; cellulose synthase/ transferase, transferring glycosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0009832|plant-type cell wall biogenesis;GO:0000271|polysaccharide biosynthetic process;GO:0005886|plasma membrane;GO:0016759|cellulose synthase activity;GO:0005783|endoplasmic reticulum;GO:0030244|cellulose biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1056:Ro03_G15321,Ro03_G15317 | AT2G34630 | GPPS, GPS1; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative | GO:0009507|chloroplast;GO:0009790|embryonic development;GO:0009536|plastid;GO:0004161|dimethylallyltranstransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1057:Ro03_G15683,Ro03_G15682 | AT1G53590||AT3G14590 | NTMC2TYPE6.2, NTMC2T6.2; NTMC2T6.2; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T6.1 (TAIR:AT1G53590.1); Has 3079 Blast hits to 2709 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 1922; Fungi - 332; Plants - 570; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).||NTMC2TYPE6.1, NTMC2T6.1; NTMC2T6.1 | GO:0009507|chloroplast;GO:0005886|plasma membrane;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1058:Ro03_G15818,Ro03_G17182 | AT3G25690 | CHUP1; CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) | GO:0009507|chloroplast;GO:0009902|chloroplast relocation;GO:0009707|chloroplast outer membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1059:Ro03_G15849,Ro03_G15847 | AT1G16280 | DEAD/DEAH box helicase, putative | GO:0008026|ATP-dependent helicase activity;GO:0003676|nucleic acid binding;GO:0004386|helicase activity;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1061:Ro03_G16012,Ro03_G16011 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1062:Ro03_G16017,Ro03_G16016 | AT5G53750 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT4G27460.1); Has 79 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1063:Ro03_G16037,Ro03_G16035 | AT3G15510||AT4G27410 | ATNAC2, ANAC056, NARS1; ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2); transcription factor||RD26; RD26 (RESPONSIVE TO DESICCATION 26); transcription activator/ transcription factor | GO:0009414|response to water deprivation;GO:0016563|transcription activator activity;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development;GO:0045449|regulation of transcription;GO:0009737|response to abscisic acid stimulus;GO:0005634|nucleus;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1065:Ro03_G16173,Ro03_G33025 | AT4G05460||AT4G05490 | F-box family protein (FBL20)||F-box family protein (FBL22) | GO:0009507|chloroplast;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0004842|ubiquitin-protein ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1066:Ro03_G16178,Ro03_G33034 | AT5G44950||AT3G59200 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1069:Ro03_G16397,Ro03_G07500 | AT3G45290||AT1G11310 | MLO2, ATMLO2, PMR2; MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding||MLO3, ATMLO3; MLO3 (MILDEW RESISTANCE LOCUS O 3); calmodulin binding | GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0016021|integral to membrane;GO:0006952|defense response;GO:0009817|defense response to fungus, incompatible interaction;GO:0008219|cell death;GO:0031348|negative regulation of defense response;GO:0009620|response to fungus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1070:Ro03_G17188,Ro03_G32578 | AT3G23880 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1071:Ro03_G17484,Ro03_G17490 | AT3G23560 | ALF5; ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ drug transporter/ transporter | GO:0016020|membrane;GO:0015238|drug transmembrane transporter activity;GO:0009636|response to toxin;GO:0015297|antiporter activity;GO:0005215|transporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1072:Ro03_G17486,Ro03_G17487 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1073:Ro03_G17721,Ro03_G17720 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1075:Ro03_G17968,Ro03_G17964 | AT5G49760 | leucine-rich repeat family protein / protein kinase family protein | GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1076:Ro03_G17986,Ro03_G17985 | AT4G27240 | zinc finger (C2H2 type) family protein | GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1078:Ro03_G18864,Ro03_G32572 | AT3G20300 | unknown protein | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1080:Ro03_G19082,Ro03_G19100 | AT5G56040||AT5G21090 | leucine-rich repeat protein, putative||leucine-rich repeat protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1081:Ro03_G19086,Ro03_G19088 | AT5G67080||AT4G26890 | MAPKKK16; MAPKKK16; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase||MAPKKK19; MAPKKK19; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1082:Ro03_G19092,Ro03_G19093 | AT4G12560||AT3G06240 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1083:Ro03_G19094,Ro03_G19095 | AT1G53400 | unknown protein | GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1085:Ro03_G19190,Ro03_G19192 | AT3G46650||AT5G38010 | UDP-glucoronosyl/UDP-glucosyl transferase family protein||UDP-glycosyltransferase/ transferase, transferring glycosyl groups | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1086:Ro03_G19195,Ro03_G19196 | AT2G26975||AT5G59030 | copper transporter, putative||COPT1; COPT1 (copper transporter 1); copper ion transmembrane transporter | GO:0016020|membrane;GO:0048364|root development;GO:0005375|copper ion transmembrane transporter activity;GO:0048235|pollen sperm cell differentiation;GO:0006825|copper ion transport;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1087:Ro03_G19797,Ro03_G19800 | AT3G20620 | F-box family protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1090:Ro03_G20486,Ro03_G32183 | AT2G19770 | PRF5; PRF5 (PROFILIN5); actin binding / actin monomer binding | GO:0005737|cytoplasm;GO:0009524|phragmoplast;GO:0003785|actin monomer binding;GO:0003779|actin binding;GO:0030036|actin cytoskeleton organization;GO:0005634|nucleus;GO:0015629|actin cytoskeleton;GO:0007010|cytoskeleton organization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1091:Ro03_G20662,Ro03_G20663 | AT4G09100||AT4G09120 | zinc finger (C3HC4-type RING finger) family protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1093:Ro03_G20710,Ro03_G20708 | AT5G54990 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1094:Ro03_G20713,Ro03_G20711 | AT5G19860||AT1G55265 | unknown protein | GO:0008150|biological_process;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1095:Ro03_G21034,Ro03_G31796 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1098:Ro03_G22587,Ro03_G32708 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1099:Ro03_G23381,Ro03_G31845 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1103:Ro03_G23872,Ro03_G32269 | AT5G19420||AT5G12350 | Ran GTPase binding / chromatin binding / zinc ion binding | GO:0003682|chromatin binding;GO:0008270|zinc ion binding;GO:0008536|Ran GTPase binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1105:Ro03_G24138,Ro03_G24135 | AT5G55500 | ATXYLT, XYLT; XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE); xylosyltransferase | GO:0005797|Golgi medial cisterna;GO:0000139|Golgi membrane;GO:0031204|posttranslational protein targeting to membrane, translocation;GO:0006487|protein amino acid N-linked glycosylation;GO:0042285|xylosyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1107:Ro03_G24665,Ro03_G32356 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1108:Ro03_G25249,Ro03_G25251 | AT4G21700 | unknown protein | GO:0009507|chloroplast;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1110:Ro03_G26122,Ro03_G23602 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1111:Ro03_G26177,Ro03_G26178 | AT3G51950||AT5G12440 | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein||nucleic acid binding / nucleotide binding / zinc ion binding | GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1112:Ro03_G26188,Ro03_G32218 | AT3G21090||AT1G51500 | CER5, D3, ABCG12, WBC12, ATWBC12; CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances||ABC transporter family protein | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0016020|membrane;GO:0010025|wax biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1113:Ro03_G26189,Ro03_G32219 | AT1G51500 | CER5, D3, ABCG12, WBC12, ATWBC12; CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0016020|membrane;GO:0010025|wax biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1114:Ro03_G26916,Ro03_G26919 | AT3G52450||AT3G11840 | PUB22; PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase||PUB24; PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase | GO:0009414|response to water deprivation;GO:0016567|protein ubiquitination;GO:0010200|response to chitin;GO:0005488|binding;GO:0000151|ubiquitin ligase complex;GO:0051865|protein autoubiquitination;GO:0002679|respiratory burst involved in defense response;GO:0004842|ubiquitin-protein ligase activity;GO:0006952|defense response;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1115:Ro03_G27589,Ro03_G32325 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1116:Ro03_G27645,Ro03_G27834 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1119:Ro03_G31746,Ro03_G31754 | AT5G48930 | HCT; HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase | GO:0016740|transferase activity;GO:0047205|quinate O-hydroxycinnamoyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0047172|shikimate O-hydroxycinnamoyltransferase activity;GO:0005575|cellular_component;GO:0010252|auxin homeostasis;GO:0009963|positive regulation of flavonoid biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1121:Ro03_G31753,Ro03_G31752 | AT3G58060 | cation efflux family protein / metal tolerance protein, putative (MTPc3) | GO:0006812|cation transport;GO:0016020|membrane;GO:0015562|efflux transmembrane transporter activity;GO:0008324|cation transmembrane transporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1123:Ro03_G31790,Ro03_G21018 | AT2G44670 | senescence-associated protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1124:Ro03_G31826,Ro03_G12037 | AT2G26560 | PLP2, PLA IIA, PLA2A; PLA2A (PHOSPHOLIPASE A 2A); lipase/ nutrient reservoir | GO:0045735|nutrient reservoir activity;GO:0046686|response to cadmium ion;GO:0006629|lipid metabolic process;GO:0016298|lipase activity;GO:0051607|defense response to virus;GO:0031408|oxylipin biosynthetic process;GO:0009626|plant-type hypersensitive response;GO:0005737|cytoplasm;GO:0008219|cell death;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1125:Ro03_G31835,Ro03_G31834 | AT3G13340 | WD-40 repeat family protein | GO:0005834|heterotrimeric G-protein complex;GO:0003674|molecular_function;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1129:Ro03_G31917,Ro03_G31913 | AT5G05340 | peroxidase, putative | GO:0006979|response to oxidative stress;GO:0004601|peroxidase activity;GO:0005515|protein binding;GO:0048046|apoplast;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1130:Ro03_G31986,Ro03_G31985 | AT3G47570||AT3G47090 | leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0009507|chloroplast;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1131:Ro03_G32011,Ro03_G32009 | AT1G12775 | LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269 proteins in 197 species: Archae - 2; Bacteria - 23; Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink). | GO:0005739|mitochondrion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1132:Ro03_G32023,Ro03_G32022 | AT1G77405 | INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 13180 Blast hits to 4377 proteins in 153 species: Archae - 4; Bacteria - 12; Metazoa - 210; Fungi - 191; Plants - 12251; Viruses - 0; Other Eukaryotes - 512 (source: NCBI BLink). | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1135:Ro03_G32063,Ro03_G32064 | AT1G08080||AT2G28210 | ATACA2; ATACA2 (ALPHA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding||ATACA7, ACA7; ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding | GO:0004089|carbonate dehydratase activity;GO:0008270|zinc ion binding;GO:0012505|endomembrane system;GO:0006730|one-carbon metabolic process;GO:0010037|response to carbon dioxide;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1136:Ro03_G32076,Ro03_G32075 | AT2G28470 | BGAL8; BGAL8 (beta-galactosidase 8); beta-galactosidase/ catalytic/ cation binding / sugar binding | GO:0004565|beta-galactosidase activity;GO:0003824|catalytic activity;GO:0043169|cation binding;GO:0005529|sugar binding;GO:0005975|carbohydrate metabolic process;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1137:Ro03_G32094,Ro03_G32100 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1138:Ro03_G32156,Ro03_G32157 | AT3G19430 | late embryogenesis abundant protein-related / LEA protein-related | GO:0005199|structural constituent of cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1140:Ro03_G32163,Ro03_G21971 | AT5G42670||AT5G52070 | agenet domain-containing protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1141:Ro03_G32181,Ro03_G32182 | AT2G17050||AT4G12010 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1142:Ro03_G32185,Ro03_G27283 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1146:Ro03_G32288,Ro03_G27018 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1150:Ro03_G32309,Ro03_G32326 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1151:Ro03_G32310,Ro03_G32327 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1156:Ro03_G32400,Ro03_G32426 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1157:Ro03_G32435,Ro03_G32388 | AT1G08440 | CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter (TAIR:AT1G08430.1); Has 377 Blast hits to 376 proteins in 91 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 4; Plants - 211; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1161:Ro03_G32503,Ro03_G32532 | AT3G14460||AT2G30695 | disease resistance protein (NBS-LRR class), putative||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 207 Blast hits to 207 proteins in 55 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | GO:0003674|molecular_function;GO:0006915|apoptosis;GO:0005515|protein binding;GO:0006952|defense response;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1162:Ro03_G32539,Ro03_G11122 | AT3G05850 | transposable element gene | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1163:Ro03_G32556,Ro03_G11147 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1165:Ro03_G32600,Ro03_G08523 | AT4G26965 | NADH:ubiquinone oxidoreductase family protein | GO:0016491|oxidoreductase activity;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1166:Ro03_G32629,Ro03_G32628 | AT1G32120 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1169:Ro03_G32712,Ro03_G32714 | AT5G54370||AT1G54890 | late embryogenesis abundant protein-related / LEA protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1171:Ro03_G32754,Ro03_G32753 | AT5G55050 | GDSL-motif lipase/hydrolase family protein | GO:0006629|lipid metabolic process;GO:0016298|lipase activity;GO:0012505|endomembrane system;GO:0004091|carboxylesterase activity;GO:0016788|hydrolase activity, acting on ester bonds | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1172:Ro03_G32793,Ro03_G32794 | AT3G14920 | unknown protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0009505|plant-type cell wall;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1175:Ro03_G32829,Ro03_G32830 | AT3G23880||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0031348|negative regulation of defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1178:Ro03_G32910,Ro03_G06924 | AT3G12870 | unknown protein | GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1179:Ro03_G32914,Ro03_G32913 | AT5G45190 | cyclin family protein | GO:0010090|trichome morphogenesis;GO:0009615|response to virus;GO:0004693|cyclin-dependent protein kinase activity;GO:0009908|flower development;GO:0050792|regulation of viral reproduction;GO:0048366|leaf development;GO:0051726|regulation of cell cycle | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1183:Ro03_G32942,Ro03_G32944 | AT4G33870 | peroxidase, putative | GO:0006979|response to oxidative stress;GO:0004601|peroxidase activity;GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1186:Ro03_G33003,Ro03_G15773 | AT5G36110 | CYP716A1; CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1187:Ro03_G33011,Ro03_G33010 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1188:Ro03_G33016,Ro03_G15806 | AT1G30690 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | GO:0006810|transport;GO:0005886|plasma membrane;GO:0005634|nucleus;GO:0005215|transporter activity;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1189:Ro03_G33017,Ro03_G15809 | AT1G30680||AT1G30660 | toprim domain-containing protein||nucleic acid binding | GO:0006260|DNA replication;GO:0003676|nucleic acid binding;GO:0006304|DNA modification;GO:0005524|ATP binding;GO:0003678|DNA helicase activity;GO:0006259|DNA metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1191:Ro03_G33146,Ro03_G33145 | AT4G04910 | NSF; NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding | GO:0005515|protein binding;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1192:Ro03_G33148,Ro03_G33147 | AT4G21580 | oxidoreductase, zinc-binding dehydrogenase family protein | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0055114|oxidation reduction;GO:0008152|metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1193:Ro03_G33186,Ro03_G27848 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1194:Ro03_G33192,Ro03_G10221 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1195:Ro03_G33194,Ro03_G33195 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1196:Ro03_G33210,Ro03_G10187 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1198:Ro04_G00136,Ro04_G00133 | AT4G02570||AT1G69870 | proton-dependent oligopeptide transport (POT) family protein||ATCUL1, CUL1, AXR6; ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding | GO:0000151|ubiquitin ligase complex;GO:0015706|nitrate transport;GO:0009867|jasmonic acid mediated signaling pathway;GO:0007049|cell cycle;GO:0005215|transporter activity;GO:0016020|membrane;GO:0005819|spindle;GO:0009753|response to jasmonic acid stimulus;GO:0010265|SCF complex assembly;GO:0009793|embryonic development ending in seed dormancy;GO:0009733|response to auxin stimulus;GO:0042752|regulation of circadian rhythm;GO:0000794|condensed nuclear chromosome;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0009524|phragmoplast;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0006857|oligopeptide transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1199:Ro04_G00137,Ro04_G00134 | AT3G06240 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1200:Ro04_G00138,Ro04_G36168 | AT2G01270 | AtQSOX2; AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase | GO:0016972|thiol oxidase activity;GO:0055114|oxidation reduction;GO:0005794|Golgi apparatus;GO:0045454|cell redox homeostasis | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1201:Ro04_G00146,Ro04_G00145 | AT1G15010||AT2G01300 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0050832|defense response to fungus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1202:Ro04_G00151,Ro04_G00140 | AT5G40940 | FLA20; FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20) | GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1204:Ro04_G00231,Ro04_G00227 | AT1G14740 | unknown protein | GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1205:Ro04_G00290,Ro04_G00289 | AT1G70710 | ATGH9B1, CEL1; ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds | GO:0010583|response to cyclopentenone;GO:0009507|chloroplast;GO:0042547|cell wall modification involved in multidimensional cell growth;GO:0008810|cellulase activity;GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1206:Ro04_G00343,Ro04_G00342 | AT1G23840||AT1G23850 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1208:Ro04_G00432,Ro04_G00431 | AT1G59950||AT1G59960 | aldo/keto reductase, putative | GO:0016491|oxidoreductase activity;GO:0055114|oxidation reduction;GO:0009651|response to salt stress | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1209:Ro04_G00454,Ro04_G00453 | AT2G02080||AT2G02070 | AtIDD5; AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5); nucleic acid binding / transcription factor/ zinc ion binding||AtIDD4; AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor | GO:0009507|chloroplast;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1210:Ro04_G02650,Ro04_G02651 | AT1G14880||AT1G68610 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1212:Ro04_G02740,Ro04_G36223 | AT3G02600||AT1G15080 | ATPAP2, ATLPP2, LPP2; LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase||LPP3, ATLPP3; LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase | GO:0003993|acid phosphatase activity;GO:0005887|integral to plasma membrane;GO:0005886|plasma membrane;GO:0009738|abscisic acid mediated signaling pathway;GO:0006644|phospholipid metabolic process;GO:0008195|phosphatidate phosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1213:Ro04_G02753,Ro04_G02754 | AT5G38260 | serine/threonine protein kinase, putative | GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0006468|protein amino acid phosphorylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1214:Ro04_G02767,Ro04_G02769 | AT1G15170||AT5G52450 | MATE efflux protein-related||MATE efflux family protein | GO:0009507|chloroplast;GO:0006855|drug transmembrane transport;GO:0009624|response to nematode;GO:0015238|drug transmembrane transporter activity;GO:0005215|transporter activity;GO:0005886|plasma membrane;GO:0015297|antiporter activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1216:Ro04_G03203,Ro04_G03202 | AT4G25780||AT4G30320 | pathogenesis-related protein, putative||allergen V5/Tpx-1-related family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005576|extracellular region;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1217:Ro04_G05995,Ro04_G36987 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1218:Ro04_G06001,Ro04_G06000 | AT4G25850||AT5G57240 | ORP4C; ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C); oxysterol binding||ORP4B; ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B); oxysterol binding | GO:0008142|oxysterol binding;GO:0005575|cellular_component;GO:0008202|steroid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1219:Ro04_G06388,Ro04_G06387 | AT3G06390 | integral membrane family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1220:Ro04_G06402,Ro04_G06401 | AT5G18600||AT3G21460 | electron carrier/ protein disulfide oxidoreductase||glutaredoxin family protein | GO:0045454|cell redox homeostasis;GO:0015035|protein disulfide oxidoreductase activity;GO:0009055|electron carrier activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1221:Ro04_G06430,Ro04_G06424 | AT2G47820 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1222:Ro04_G06442,Ro04_G36406 | AT1G48910 | YUC10; YUC10; FAD binding / monooxygenase/ oxidoreductase | GO:0009653|anatomical structure morphogenesis;GO:0050660|FAD binding;GO:0016491|oxidoreductase activity;GO:0005575|cellular_component;GO:0004497|monooxygenase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1223:Ro04_G07095,Ro04_G36305 | AT5G36930||AT4G12010 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1225:Ro04_G07219,Ro04_G07217 | AT1G13195 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1227:Ro04_G08541,Ro04_G08542 | AT3G22560||AT2G32030 | GCN5-related N-acetyltransferase (GNAT) family protein | GO:0008080|N-acetyltransferase activity;GO:0008152|metabolic process;GO:0016020|membrane;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1228:Ro04_G09322,Ro04_G09321 | AT1G70170 | MMP; MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase | GO:0006508|proteolysis;GO:0008152|metabolic process;GO:0031225|anchored to membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1229:Ro04_G12450,Ro04_G12449 | AT1G04340||AT4G14420 | lesion inducing protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1230:Ro04_G12485,Ro04_G36100 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1231:Ro04_G12502,Ro04_G12504 | AT2G44540||AT1G48930 | AtGH9B9; AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds||AtGH9C1; AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds | GO:0012505|endomembrane system;GO:0005975|carbohydrate metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1232:Ro04_G12528,Ro04_G12530 | AT1G31870 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005634|nucleus;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1234:Ro04_G12751,Ro04_G36888 | AT1G68610||AT3G18470 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1235:Ro04_G12959,Ro04_G12957 | AT3G07200||AT5G48655 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0010200|response to chitin | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1236:Ro04_G13537,Ro04_G13539 | AT3G22850||AT5G43830 | unknown protein | GO:0003674|molecular_function;GO:0005886|plasma membrane;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1237:Ro04_G14087,Ro04_G12475 | AT3G04620 | nucleic acid binding | GO:0008150|biological_process;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1238:Ro04_G15191,Ro04_G15192 | AT5G21160 | La domain-containing protein / proline-rich family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005634|nucleus;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1241:Ro04_G15365,Ro04_G36588 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1243:Ro04_G15616,Ro04_G15611 | AT3G22510 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1244:Ro04_G16089,Ro04_G16088 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1245:Ro04_G16577,Ro04_G17658 | AT5G19180 | ECR1; ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme | GO:0008641|small protein activating enzyme activity;GO:0045116|protein neddylation;GO:0046982|protein heterodimerization activity;GO:0005575|cellular_component;GO:0019781|NEDD8 activating enzyme activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1247:Ro04_G17510,Ro04_G17509 | AT5G55410||AT5G55460 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | GO:0008289|lipid binding;GO:0012505|endomembrane system;GO:0006869|lipid transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1249:Ro04_G18005,Ro04_G12965 | AT1G04920 | ATSPS3F; ATSPS3F (sucrose phosphate synthase 3F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups | GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0005985|sucrose metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1250:Ro04_G18011,Ro04_G18006 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1253:Ro04_G18898,Ro04_G18896 | AT2G30810 | gibberellin-regulated family protein | GO:0009739|response to gibberellin stimulus;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1257:Ro04_G19709,Ro04_G19706 | AT1G15780 | unknown protein | GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1258:Ro04_G19718,Ro04_G19714 | AT3G57190 | peptide chain release factor, putative | GO:0005737|cytoplasm;GO:0003747|translation release factor activity;GO:0016149|translation release factor activity, codon specific;GO:0006415|translational termination | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1259:Ro04_G20538,Ro04_G20540 | AT5G43700||AT3G23050 | IAA7, AXR2; IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor||ATAUX2-11, IAA4; ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor | GO:0010583|response to cyclopentenone;GO:0040008|regulation of growth;GO:0009414|response to water deprivation;GO:0009733|response to auxin stimulus;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0009753|response to jasmonic acid stimulus;GO:0005634|nucleus;GO:0019005|SCF ubiquitin ligase complex;GO:0009630|gravitropism;GO:0006417|regulation of translation;GO:0000502|proteasome complex;GO:0009611|response to wounding;GO:0008180|signalosome | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1261:Ro04_G21374,Ro04_G21370 | AT3G49400 | transducin family protein / WD-40 repeat family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1262:Ro04_G21444,Ro04_G21443 | AT2G20370||AT4G13990 | exostosin family protein||KAM1, MUR3; MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups | GO:0030173|integral to Golgi membrane;GO:0003824|catalytic activity;GO:0016757|transferase activity, transferring glycosyl groups;GO:0009863|salicylic acid mediated signaling pathway;GO:0010256|endomembrane system organization;GO:0008150|biological_process;GO:0009826|unidimensional cell growth;GO:0005794|Golgi apparatus;GO:0009969|xyloglucan biosynthetic process;GO:0042353|fucose biosynthetic process;GO:0016020|membrane;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1263:Ro04_G21552,Ro04_G21551 | AT4G14660 | NRPE7; NRPE7; DNA-directed RNA polymerase | GO:0006350|transcription;GO:0003899|DNA-directed RNA polymerase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1265:Ro04_G21723,Ro04_G21725 | AT1G70890||AT1G70840 | MLP43; MLP43 (MLP-LIKE PROTEIN 43)||MLP31; MLP31 (MLP-LIKE PROTEIN 31) | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0009607|response to biotic stimulus;GO:0006952|defense response;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1266:Ro04_G21724,Ro04_G21726 | AT1G08510 | FATB; FATB (fatty acyl-ACP thioesterases B); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase | GO:0016297|acyl-[acyl-carrier-protein] hydrolase activity;GO:0000036|acyl carrier activity;GO:0006633|fatty acid biosynthetic process;GO:0009536|plastid | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1268:Ro04_G22286,Ro04_G26096 | AT3G59470||AT2G43280 | far-red impaired responsive family protein / FAR1 family protein | GO:0009639|response to red or far red light;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1269:Ro04_G22383,Ro04_G22385 | AT4G10310 | HKT1, ATHKT1; HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter | GO:0006813|potassium ion transport;GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0015081|sodium ion transmembrane transporter activity;GO:0006970|response to osmotic stress;GO:0006814|sodium ion transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1270:Ro04_G22814,Ro04_G17857 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1272:Ro04_G23433,Ro04_G23434 | AT4G14790 | ATSUV3, EDA15; ATSUV3; ATP-dependent RNA helicase | GO:0004004|ATP-dependent RNA helicase activity;GO:0009555|pollen development;GO:0009561|megagametogenesis;GO:0016070|RNA metabolic process;GO:0005739|mitochondrion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1273:Ro04_G23436,Ro04_G36812 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1275:Ro04_G23657,Ro04_G37036 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1276:Ro04_G23658,Ro04_G37035 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1277:Ro04_G23664,Ro04_G16980 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1279:Ro04_G24959,Ro04_G26206 | AT5G13930 | CHS, TT4, ATCHS; TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase | GO:0006979|response to oxidative stress;GO:0016210|naringenin-chalcone synthase activity;GO:0009813|flavonoid biosynthetic process;GO:0009629|response to gravity;GO:0031540|regulation of anthocyanin biosynthetic process;GO:0009715|chalcone biosynthetic process;GO:0005783|endoplasmic reticulum;GO:0009753|response to jasmonic acid stimulus;GO:0005634|nucleus;GO:0010224|response to UV-B;GO:0009705|plant-type vacuole membrane;GO:0009926|auxin polar transport;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1280:Ro04_G25024,Ro04_G19579 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1282:Ro04_G25496,Ro04_G20537 | AT5G43710 | glycoside hydrolase family 47 protein | GO:0004559|alpha-mannosidase activity;GO:0006487|protein amino acid N-linked glycosylation;GO:0012505|endomembrane system;GO:0004571|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;GO:0005509|calcium ion binding;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1283:Ro04_G25896,Ro04_G36585 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1284:Ro04_G26084,Ro04_G26068 | AT3G22790 | kinase interacting family protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1285:Ro04_G26130,Ro04_G26134 | AT4G30310 | ribitol kinase, putative | GO:0009507|chloroplast;GO:0016773|phosphotransferase activity, alcohol group as acceptor;GO:0005975|carbohydrate metabolic process;GO:0019200|carbohydrate kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1286:Ro04_G26132,Ro04_G11412 | AT5G57590 | BIO1; BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase | GO:0009102|biotin biosynthetic process;GO:0004015|adenosylmethionine-8-amino-7-oxononanoate transaminase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1289:Ro04_G27203,Ro04_G27205 | AT1G06710||AT4G23620 | 50S ribosomal protein-related||pentatricopeptide (PPR) repeat-containing protein | GO:0050897|cobalt ion binding;GO:0006412|translation;GO:0008270|zinc ion binding;GO:0005622|intracellular;GO:0005840|ribosome;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1290:Ro04_G27657,Ro04_G27658 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1292:Ro04_G36185,Ro04_G36186 | AT1G13750 | calcineurin-like phosphoesterase family protein | GO:0046872|metal ion binding;GO:0003993|acid phosphatase activity;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0004722|protein serine/threonine phosphatase activity;GO:0016787|hydrolase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1293:Ro04_G36191,Ro04_G36189 | AT5G03490 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0016757|transferase activity, transferring glycosyl groups;GO:0035251|UDP-glucosyltransferase activity;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0016758|transferase activity, transferring hexosyl groups;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1294:Ro04_G36210,Ro04_G02698 | AT1G68300 | universal stress protein (USP) family protein | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0006950|response to stress | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1295:Ro04_G36219,Ro04_G02691 | AT1G77420 | hydrolase, alpha/beta fold family protein | GO:0016787|hydrolase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1297:Ro04_G36252,Ro04_G02789 | AT1G70520||AT1G70530 | protein kinase family protein | GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1299:Ro04_G36308,Ro04_G23120 | AT5G43300 | glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase | GO:0008081|phosphoric diester hydrolase activity;GO:0006629|lipid metabolic process;GO:0006071|glycerol metabolic process;GO:0008889|glycerophosphodiester phosphodiesterase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1302:Ro04_G36346,Ro04_G36347 | AT3G17380 | meprin and TRAF homology domain-containing protein / MATH domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1305:Ro04_G36376,Ro04_G36377 | AT2G45630 | oxidoreductase family protein | GO:0048037|cofactor binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1307:Ro04_G36414,Ro04_G36413 | AT1G09070 | SRC2, (AT)SRC2; SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding | GO:0000326|protein storage vacuole;GO:0005515|protein binding;GO:0006623|protein targeting to vacuole;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1308:Ro04_G36415,Ro04_G36416 | AT5G07900||AT1G61970 | mitochondrial transcription termination factor-related / mTERF-related||mitochondrial transcription termination factor family protein / mTERF family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1310:Ro04_G36448,Ro04_G36447 | AT3G50160||AT3G50170 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1312:Ro04_G36509,Ro04_G12949 | AT4G13800 | permease-related | GO:0008150|biological_process;GO:0005886|plasma membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1313:Ro04_G36551,Ro04_G12955 | AT3G23910 | unknown protein | GO:0006979|response to oxidative stress;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1314:Ro04_G36553,Ro04_G36554 | AT5G46470||AT5G17680 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0007165|signal transduction;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0042742|defense response to bacterium;GO:0006952|defense response;GO:0045087|innate immune response;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1318:Ro04_G36607,Ro04_G36606 | AT5G22060||AT3G44110 | ATJ3, ATJ; ATJ3; protein binding||ATJ2, J2; ATJ2; protein binding | GO:0006457|protein folding;GO:0005730|nucleolus;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1323:Ro04_G36677,Ro04_G24028 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1324:Ro04_G36678,Ro04_G24027 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1325:Ro04_G36679,Ro04_G24029 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1328:Ro04_G36693,Ro04_G36692 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1337:Ro04_G36798,Ro04_G23429 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1338:Ro04_G36802,Ro04_G21096 | AT3G56480 | myosin heavy chain-related | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1339:Ro04_G36818,Ro04_G36819 | AT2G45490 | AtAUR3; AtAUR3 (ATAURORA3); ATP binding / histone kinase(H3-S10 specific) / protein kinase | GO:0035175|histone kinase activity (H3-S10 specific);GO:0005819|spindle;GO:0005634|nucleus;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0000775|chromosome, centromeric region;GO:0016572|histone phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1340:Ro04_G36822,Ro04_G36823 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1341:Ro04_G36832,Ro04_G36831 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1342:Ro04_G36833,Ro04_G27099 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1345:Ro04_G36881,Ro04_G27755 | AT1G04420 | aldo/keto reductase family protein | GO:0009507|chloroplast;GO:0004033|aldo-keto reductase activity;GO:0055114|oxidation reduction;GO:0009570|chloroplast stroma;GO:0016491|oxidoreductase activity;GO:0009941|chloroplast envelope | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1346:Ro04_G36884,Ro04_G36885 | AT5G17050 | UGT78D2; UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2); UDP-glycosyltransferase/ anthocyanidin 3-O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups | GO:0035251|UDP-glucosyltransferase activity;GO:0047213|anthocyanidin 3-O-glucosyltransferase activity;GO:0008194|UDP-glycosyltransferase activity;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1348:Ro04_G36900,Ro04_G12764 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1349:Ro04_G36930,Ro04_G36931 | AT3G16970||AT2G23148 | self-incompatibility protein-related||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23142.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1350:Ro04_G36938,Ro04_G12652 | AT4G27190 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005575|cellular_component;GO:0006952|defense response;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1352:Ro04_G36993,Ro04_G13960 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1353:Ro04_G37017,Ro04_G37016 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1354:Ro04_G37037,Ro04_G16984 | AT1G67090 | RBCS1A; RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A); copper ion binding / ribulose-bisphosphate carboxylase | GO:0031977|thylakoid lumen;GO:0009507|chloroplast;GO:0009579|thylakoid;GO:0009570|chloroplast stroma;GO:0048046|apoplast;GO:0022626|cytosolic ribosome;GO:0009941|chloroplast envelope;GO:0016020|membrane;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1368:Ro04_G37179,Ro04_G37165 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1372:Ro04_G37268,Ro04_G37266 | AT5G57580 | calmodulin-binding protein | GO:0005516|calmodulin binding;GO:0008150|biological_process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1374:Ro05_G01696,Ro05_G01697 | AT4G10850 | nodulin MtN3 family protein | GO:0016021|integral to membrane;GO:0012505|endomembrane system;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1375:Ro05_G01768,Ro05_G01770 | AT1G32960||AT4G10540 | subtilase family protein||ATSBT3.3, SBT3.3; SBT3.3; identical protein binding / serine-type endopeptidase | GO:0006508|proteolysis;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0009505|plant-type cell wall;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1376:Ro05_G01782,Ro05_G01783 | AT1G33060||AT2G45530 | zinc finger (C3HC4-type RING finger) family protein||ANAC014; no apical meristem (NAM) family protein | GO:0045449|regulation of transcription;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1377:Ro05_G01786,Ro05_G01789 | AT3G30340||AT5G07050 | LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G40900.1); Has 2288 Blast hits to 2270 proteins in 280 species: Archae - 23; Bacteria - 774; Metazoa - 5; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).||nodulin MtN21 family protein | GO:0016020|membrane;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1379:Ro05_G01862,Ro05_G01863 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1381:Ro05_G03392,Ro05_G03396 | AT1G18485 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1382:Ro05_G03397,Ro05_G03398 | AT1G73990 | SPPA; SPPA; serine-type endopeptidase | GO:0009507|chloroplast;GO:0006508|proteolysis;GO:0030095|chloroplast photosystem II;GO:0009535|chloroplast thylakoid membrane;GO:0004252|serine-type endopeptidase activity;GO:0009642|response to light intensity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1383:Ro05_G03469,Ro05_G16471 | AT3G01780 | TPLATE; TPLATE; binding | GO:0005886|plasma membrane;GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1384:Ro05_G04584,Ro05_G04581 | AT5G60930 | chromosome-associated kinesin, putative | GO:0005875|microtubule associated complex;GO:0005524|ATP binding;GO:0007018|microtubule-based movement;GO:0003777|microtubule motor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1385:Ro05_G06601,Ro05_G27363 | AT4G23650 | CDPK6, CPK3; CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0004683|calmodulin-dependent protein kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0009738|abscisic acid mediated signaling pathway;GO:0006499|N-terminal protein myristoylation;GO:0010119|regulation of stomatal movement;GO:0004672|protein kinase activity;GO:0005509|calcium ion binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0010359|regulation of anion channel activity;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1386:Ro05_G07236,Ro05_G07241 | AT2G44730 | transcription factor | GO:0009507|chloroplast;GO:0045449|regulation of transcription;GO:0003700|transcription factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1388:Ro05_G07253,Ro05_G07264 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1389:Ro05_G07288,Ro05_G30883 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1392:Ro05_G08588,Ro05_G08589 | AT4G12290||AT4G12280 | copper amine oxidase family protein||amine oxidase/ copper ion binding / quinone binding | GO:0048038|quinone binding;GO:0005773|vacuole;GO:0005575|cellular_component;GO:0008131|amine oxidase activity;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1393:Ro05_G08663,Ro05_G18445 | AT5G17550 | PEX19-2, PEROXIN 19-2; PEX19-2 | GO:0003674|molecular_function;GO:0005777|peroxisome;GO:0007031|peroxisome organization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1394:Ro05_G09364,Ro05_G09366 | AT1G34670 | AtMYB93; AtMYB93 (myb domain protein 93); DNA binding / transcription factor | GO:0009733|response to auxin stimulus;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0009737|response to abscisic acid stimulus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009751|response to salicylic acid stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1395:Ro05_G11051,Ro05_G11049 | AT5G11510 | MYB3R-4, AtMYB3R4; MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor | GO:0003713|transcription coactivator activity;GO:0003677|DNA binding;GO:0032875|regulation of DNA endoreduplication;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0007049|cell cycle | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1396:Ro05_G11052,Ro05_G11050 | AT4G27190 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0005575|cellular_component;GO:0006952|defense response;GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1398:Ro05_G11417,Ro05_G30758 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1399:Ro05_G11462,Ro05_G11461 | AT5G41470 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein (TAIR:AT1G71480.1); Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1401:Ro05_G11807,Ro05_G11811 | AT2G22740||AT2G35160 | SUVH6; SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase||SUVH5, SGD9; SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase | GO:0031048|chromatin silencing by small RNA;GO:0010216|maintenance of DNA methylation;GO:0016571|histone methylation;GO:0010200|response to chitin;GO:0010428|methyl-CpNpG binding;GO:0040029|regulation of gene expression, epigenetic;GO:0005634|nucleus;GO:0008327|methyl-CpG binding;GO:0010429|methyl-CpNpN binding;GO:0042054|histone methyltransferase activity;GO:0008168|methyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1402:Ro05_G11823,Ro05_G11832 | AT2G22740 | SUVH6; SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase | GO:0016571|histone methylation;GO:0010428|methyl-CpNpG binding;GO:0005634|nucleus;GO:0008327|methyl-CpG binding;GO:0010429|methyl-CpNpN binding;GO:0008168|methyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1403:Ro05_G11844,Ro05_G31289 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1404:Ro05_G11922,Ro05_G11917 | AT1G31440 | SH3 domain-containing protein 1 (SH3P1) | GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0030276|clathrin binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1406:Ro05_G12125,Ro05_G30690 | AT4G10920 | KELP; KELP; DNA binding / transcription coactivator/ transcription regulator | GO:0030528|transcription regulator activity;GO:0003713|transcription coactivator activity;GO:0003677|DNA binding;GO:0006355|regulation of transcription, DNA-dependent;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1407:Ro05_G12126,Ro05_G12123 | AT4G10910 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1408:Ro05_G12149,Ro05_G12147 | AT5G62850 | AtVEX1; AtVEX1 (VEGETATIVE CELL EXPRESSED1) | GO:0008150|biological_process;GO:0016021|integral to membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1411:Ro05_G12586,Ro05_G12583 | AT3G09360 | RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding | GO:0030528|transcription regulator activity;GO:0003702|RNA polymerase II transcription factor activity;GO:0006352|transcription initiation;GO:0005515|protein binding;GO:0016563|transcription activator activity;GO:0008270|zinc ion binding;GO:0005634|nucleus;GO:0045941|positive regulation of transcription;GO:0006355|regulation of transcription, DNA-dependent;GO:0006413|translational initiation;GO:0005667|transcription factor complex;GO:0003743|translation initiation factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1415:Ro05_G13827,Ro05_G13825 | AT4G31980 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1416:Ro05_G13876,Ro05_G13875 | AT1G76540 | CDKB2;1; CDKB2;1 (cyclin-dependent kinase B2;1); cyclin-dependent protein kinase/ kinase/ protein binding | GO:0010583|response to cyclopentenone;GO:0005515|protein binding;GO:0004693|cyclin-dependent protein kinase activity;GO:0000086|G2/M transition of mitotic cell cycle;GO:0009755|hormone-mediated signaling pathway;GO:0010389|regulation of G2/M transition of mitotic cell cycle;GO:0016572|histone phosphorylation;GO:0000307|cyclin-dependent protein kinase holoenzyme complex;GO:0016301|kinase activity;GO:0009934|regulation of meristem structural organization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1417:Ro05_G13934,Ro05_G20590 | AT1G20760 | calcium-binding EF hand family protein | GO:0005886|plasma membrane;GO:0005509|calcium ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1419:Ro05_G14053,Ro05_G14055 | AT1G72175 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1422:Ro05_G14255,Ro05_G14256 | AT4G12190||AT2G01150 | zinc finger (C3HC4-type RING finger) family protein||RHA2B; RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / ubiquitin-protein ligase/ zinc ion binding | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0004842|ubiquitin-protein ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1424:Ro05_G14498,Ro05_G14497 | AT4G24715||AT5G50200 | ||WR3; WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter | ;GO:0015112|nitrate transmembrane transporter activity;GO:0005886|plasma membrane;GO:0015706|nitrate transport;GO:0010167|response to nitrate;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1426:Ro05_G15586,Ro05_G15589 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1427:Ro05_G15991,Ro05_G15989 | AT5G49660||AT1G09970 | LRR XI-23; LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0005524|ATP binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0046777|protein amino acid autophosphorylation;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1428:Ro05_G16278,Ro05_G16280 | AT1G49030||AT3G18470 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1429:Ro05_G16321,Ro05_G30562 | AT3G59000 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1430:Ro05_G16426,Ro05_G16425 | AT3G47730||AT3G47780 | ATATH6, ATH6; ATATH6; ATPase, coupled to transmembrane movement of substances / transporter||ATATH1, ATH1; ATATH1; ATPase, coupled to transmembrane movement of substances / transporter | GO:0005739|mitochondrion;GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0005215|transporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1431:Ro05_G16470,Ro05_G30517 | AT5G13050 | 5-FCL; 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE); 5-formyltetrahydrofolate cyclo-ligase | GO:0005739|mitochondrion;GO:0046653|tetrahydrofolate metabolic process;GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1432:Ro05_G17816,Ro05_G31507 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1433:Ro05_G17846,Ro05_G27917 | AT4G23750||AT5G53290 | CRF2; CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor||CRF3; CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor | GO:0048825|cotyledon development;GO:0048364|root development;GO:0005515|protein binding;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0042991|transcription factor import into nucleus;GO:0005634|nucleus;GO:0048366|leaf development;GO:0006355|regulation of transcription, DNA-dependent | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1434:Ro05_G18623,Ro05_G20393 | AT1G76440||AT1G20870 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1438:Ro05_G19606,Ro05_G20045 | AT1G77010 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1439:Ro05_G19978,Ro05_G19979 | AT1G71691||AT1G33811 | GDSL-motif lipase/hydrolase family protein | GO:0004091|carboxylesterase activity;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1440:Ro05_G19983,Ro05_G31526 | AT5G18390 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1442:Ro05_G20468,Ro05_G20467 | AT1G71180 | 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein | GO:0005488|binding;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0006098|pentose-phosphate shunt;GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity;GO:0008152|metabolic process;GO:0050662|coenzyme binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1443:Ro05_G22095,Ro05_G24742 | AT1G20720||AT4G08540 | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding||unknown protein | GO:0003674|molecular_function;GO:0008026|ATP-dependent helicase activity;GO:0016818|hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;GO:0003677|DNA binding;GO:0004003|ATP-dependent DNA helicase activity;GO:0003676|nucleic acid binding;GO:0006139|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;GO:0008150|biological_process;GO:0005739|mitochondrion;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1444:Ro05_G22138,Ro05_G22139 | AT5G50310 | kelch repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1445:Ro05_G22165,Ro05_G22163 | AT1G68090 | ANNAT5, ANN5; ANN5; calcium ion binding / calcium-dependent phospholipid binding | GO:0009414|response to water deprivation;GO:0005544|calcium-dependent phospholipid binding;GO:0009651|response to salt stress;GO:0009408|response to heat;GO:0009409|response to cold;GO:0005509|calcium ion binding;GO:0009639|response to red or far red light;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1447:Ro05_G22572,Ro05_G22573 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1448:Ro05_G22856,Ro05_G22858 | AT4G10950 | GDSL-motif lipase/hydrolase family protein | GO:0016788|hydrolase activity, acting on ester bonds;GO:0005575|cellular_component;GO:0004091|carboxylesterase activity;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1449:Ro05_G22872,Ro05_G22548 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1451:Ro05_G22909,Ro05_G30967 | AT5G50970 | WD-40 repeat family protein | GO:0008150|biological_process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1452:Ro05_G22911,Ro05_G22905 | AT4G38495 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 189 Blast hits to 189 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 83; Plants - 17; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1454:Ro05_G24065,Ro05_G24066 | AT1G25270||AT1G68170 | LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).||nodulin MtN21 family protein | GO:0016020|membrane;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1455:Ro05_G24279,Ro05_G11841 | AT3G06470 | GNS1/SUR4 membrane family protein | GO:0008150|biological_process;GO:0016021|integral to membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1456:Ro05_G24286,Ro05_G31368 | AT5G24690 | INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink). | GO:0009507|chloroplast;GO:0005739|mitochondrion;GO:0009536|plastid;GO:0008150|biological_process;GO:0009941|chloroplast envelope;GO:0009706|chloroplast inner membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1459:Ro05_G24575,Ro05_G14512 | AT1G22460||AT4G09010 | unknown protein||APX4; APX4 (ASCORBATE PEROXIDASE 4); heme binding / peroxidase | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0006979|response to oxidative stress;GO:0005737|cytoplasm;GO:0009579|thylakoid;GO:0004601|peroxidase activity;GO:0008150|biological_process;GO:0005634|nucleus;GO:0009543|chloroplast thylakoid lumen;GO:0009535|chloroplast thylakoid membrane;GO:0005575|cellular_component;GO:0031977|thylakoid lumen;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1460:Ro05_G24631,Ro05_G22824 | AT1G71220||AT2G13840 | PHP domain-containing protein||EBS1; EBS1 (EMS-mutagenized bri1 suppressor 1); UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0010204|defense response signaling pathway, resistance gene-independent;GO:0003980|UDP-glucose:glycoprotein glucosyltransferase activity;GO:0003824|catalytic activity;GO:0016051|carbohydrate biosynthetic process;GO:0005783|endoplasmic reticulum;GO:0006486|protein amino acid glycosylation;GO:0046283|anthocyanin metabolic process;GO:0009626|plant-type hypersensitive response;GO:0016758|transferase activity, transferring hexosyl groups;GO:0009751|response to salicylic acid stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1461:Ro05_G24753,Ro05_G26138 | AT1G36390||AT1G77850 | ARF17; ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor||co-chaperone grpE family protein | GO:0009507|chloroplast;GO:0006457|protein folding;GO:0009653|anatomical structure morphogenesis;GO:0009570|chloroplast stroma;GO:0003700|transcription factor activity;GO:0009734|auxin mediated signaling pathway;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0048830|adventitious root development;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1462:Ro05_G24840,Ro05_G18635 | AT1G11310||AT2G33670 | MLO2, ATMLO2, PMR2; MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding||MLO5, ATMLO5; MLO5 (MILDEW RESISTANCE LOCUS O 5); calmodulin binding | GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0016021|integral to membrane;GO:0006952|defense response;GO:0009817|defense response to fungus, incompatible interaction;GO:0008219|cell death;GO:0031348|negative regulation of defense response;GO:0009620|response to fungus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1464:Ro05_G25624,Ro05_G27853 | AT5G48910 | pentatricopeptide (PPR) repeat-containing protein | GO:0009507|chloroplast;GO:0009451|RNA modification | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1466:Ro05_G25661,Ro05_G31629 | AT3G54630 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species: Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1468:Ro05_G25695,Ro05_G31401 | AT1G80930 | MIF4G domain-containing protein / MA3 domain-containing protein | GO:0005488|binding;GO:0005515|protein binding;GO:0006412|translation;GO:0005634|nucleus;GO:0003723|RNA binding;GO:0016070|RNA metabolic process;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1469:Ro05_G25923,Ro05_G22069 | AT2G36690 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | GO:0016491|oxidoreductase activity;GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0016706|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1470:Ro05_G26397,Ro05_G25914 | AT5G43580 | serine-type endopeptidase inhibitor | GO:0006952|defense response;GO:0005575|cellular_component;GO:0004867|serine-type endopeptidase inhibitor activity;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1471:Ro05_G26472,Ro05_G15995 | AT5G49650 | xylulose kinase, putative | GO:0004856|xylulokinase activity;GO:0005997|xylulose metabolic process;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1473:Ro05_G26792,Ro05_G31254 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1474:Ro05_G26940,Ro05_G25425 | AT1G11620||AT3G06240 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1476:Ro05_G26992,Ro05_G31317 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1478:Ro05_G27143,Ro05_G26139 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1479:Ro05_G27519,Ro05_G30966 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1480:Ro05_G27521,Ro05_G24918 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1482:Ro05_G30493,Ro05_G03652 | AT3G17790||AT2G01890 | ATACP5, ATPAP17, PAP17; PAP17; acid phosphatase/ phosphatase/ protein serine/threonine phosphatase||PAP8, ATPAP8; PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase | GO:0003993|acid phosphatase activity;GO:0009986|cell surface;GO:0012505|endomembrane system;GO:0042542|response to hydrogen peroxide;GO:0016311|dephosphorylation;GO:0016791|phosphatase activity;GO:0030643|cellular phosphate ion homeostasis;GO:0004722|protein serine/threonine phosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1483:Ro05_G30502,Ro05_G03611 | AT3G17970 | atToc64-III; atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor | GO:0009507|chloroplast;GO:0016884|carbon-nitrogen ligase activity, with glutamine as amido-N-donor;GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1484:Ro05_G30521,Ro05_G16461 | AT1G74780 | nodulin family protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1488:Ro05_G30571,Ro05_G30572 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1492:Ro05_G30624,Ro05_G30625 | AT5G58003 | CPL4; CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase | GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1495:Ro05_G30741,Ro05_G30742 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1496:Ro05_G30757,Ro05_G30761 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1497:Ro05_G30763,Ro05_G17890 | AT4G00315||AT1G16930 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1498:Ro05_G30771,Ro05_G11054 | AT1G63220 | C2 domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1500:Ro05_G30785,Ro05_G30784 | AT3G26040 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1504:Ro05_G30888,Ro05_G30889 | AT2G38740 | haloacid dehalogenase-like hydrolase family protein | GO:0005886|plasma membrane;GO:0008152|metabolic process;GO:0016787|hydrolase activity;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1509:Ro05_G30960,Ro05_G22903 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1510:Ro05_G30973,Ro05_G24930 | AT1G32100 | ATPRR1, PRR1; PRR1 (PINORESINOL REDUCTASE 1); pinoresinol reductase | GO:0009807|lignan biosynthetic process;GO:0005575|cellular_component;GO:0010283|pinoresinol reductase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1511:Ro05_G30989,Ro05_G19034 | AT2G13600||AT3G13770 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1516:Ro05_G31134,Ro05_G06598 | AT2G02400 | cinnamoyl-CoA reductase family | GO:0005488|binding;GO:0016621|cinnamoyl-CoA reductase activity;GO:0003824|catalytic activity;GO:0005886|plasma membrane;GO:0009809|lignin biosynthetic process;GO:0050662|coenzyme binding;GO:0008152|metabolic process;GO:0044237|cellular metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1518:Ro05_G31209,Ro05_G22683 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1521:Ro05_G31325,Ro05_G31328 | AT1G01340||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC10, CNGC10, ACBK1; ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0030551|cyclic nucleotide binding;GO:0005261|cation channel activity;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1523:Ro05_G31373,Ro05_G31374 | AT4G08850||AT1G35710 | leucine-rich repeat transmembrane protein kinase, putative||kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1525:Ro05_G31407,Ro05_G13361 | AT1G68170||AT1G25270 | LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).||nodulin MtN21 family protein | GO:0016020|membrane;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1526:Ro05_G31437,Ro05_G31439 | AT5G54160 | ATOMT1, OMT1; ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3'-O-methyltransferase/ quercetin 3-O-methyltransferase | GO:0051555|flavonol biosynthetic process;GO:0005886|plasma membrane;GO:0047763|caffeate O-methyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0005634|nucleus;GO:0033799|myricetin 3'-O-methyltransferase activity;GO:0005737|cytoplasm;GO:0030755|quercetin 3-O-methyltransferase activity;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1527:Ro05_G31443,Ro05_G24555 | AT1G72190 | oxidoreductase family protein | GO:0005488|binding;GO:0009090|homoserine biosynthetic process;GO:0003824|catalytic activity;GO:0048037|cofactor binding;GO:0016491|oxidoreductase activity;GO:0051287|NAD or NADH binding;GO:0008152|metabolic process;GO:0016616|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1529:Ro05_G31479,Ro05_G26695 | AT5G48620||AT1G50180 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005886|plasma membrane;GO:0006952|defense response;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1530:Ro05_G31486,Ro05_G31485 | AT3G16520 | UGT88A1; UDP-glucoronosyl/UDP-glucosyl transferase family protein | GO:0008194|UDP-glycosyltransferase activity;GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1531:Ro05_G31515,Ro05_G26899 | AT3G26040 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1532:Ro05_G31544,Ro05_G31533 | AT1G58250 | SAB; SAB (SABRE) | GO:0005886|plasma membrane;GO:0009723|response to ethylene stimulus;GO:0016049|cell growth;GO:0009825|multidimensional cell growth | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1534:Ro05_G31553,Ro05_G15634 | AT3G44370 | binding | GO:0005739|mitochondrion;GO:0005488|binding;GO:0051205|protein insertion into membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1536:Ro05_G31571,Ro05_G31570 | AT1G10330||AT2G22410 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1537:Ro05_G31610,Ro05_G04599 | AT5G03560 | nucleobase:cation symporter | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0015391|nucleobase:cation symporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1540:Ro05_G31657,Ro05_G31689 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1541:Ro05_G31660,Ro05_G22370 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1543:Ro05_G31681,Ro05_G31682 | AT1G78240||AT4G08940 | TSD2, QUA2; TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase||ubiquitin thiolesterase | GO:0006979|response to oxidative stress;GO:0010289|homogalacturonan biosynthetic process;GO:0048364|root development;GO:0005622|intracellular;GO:0005794|Golgi apparatus;GO:0048367|shoot development;GO:0004221|ubiquitin thiolesterase activity;GO:0009735|response to cytokinin stimulus;GO:0008168|methyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1544:Ro05_G31695,Ro05_G09365 | AT2G22370 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1549:Ro06_G02817,Ro06_G02821 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1550:Ro06_G02819,Ro06_G02820 | AT3G05165||AT1G54730 | sugar transporter, putative | GO:0015144|carbohydrate transmembrane transporter activity;GO:0005351|sugar:hydrogen symporter activity;GO:0016021|integral to membrane;GO:0055085|transmembrane transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1551:Ro06_G02822,Ro06_G02823 | AT5G56950 | NFA03, NFA3, NAP1;3; NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding | GO:0006281|DNA repair;GO:0006334|nucleosome assembly;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0009294|DNA mediated transformation;GO:0005737|cytoplasm | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1552:Ro06_G02838,Ro06_G02844 | AT5G27410 | aminotransferase class IV family protein | GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1553:Ro06_G02881,Ro06_G02883 | AT5G62380 | VND6, ANAC101; ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator | GO:0030528|transcription regulator activity;GO:0016563|transcription activator activity;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development;GO:0009737|response to abscisic acid stimulus;GO:0005634|nucleus;GO:0009741|response to brassinosteroid stimulus;GO:0009735|response to cytokinin stimulus;GO:0010089|xylem development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1555:Ro06_G03847,Ro06_G03846 | AT5G50360||AT3G27250 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1556:Ro06_G04832,Ro06_G04835 | AT5G15900 | unknown protein | GO:0008150|biological_process;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1558:Ro06_G04879,Ro06_G04882 | AT3G30300||AT5G15740 | unknown protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: EDA30 (embryo sac development arrest 30) (TAIR:AT3G03810.1); Has 512 Blast hits to 417 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 512; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1559:Ro06_G04889,Ro06_G04890 | AT5G38900 | DSBA oxidoreductase family protein | GO:0009817|defense response to fungus, incompatible interaction;GO:0005575|cellular_component;GO:0015035|protein disulfide oxidoreductase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1561:Ro06_G04911,Ro06_G04917 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1562:Ro06_G05514,Ro06_G05519 | AT2G31180||AT4G21440 | ATMYB14, MYB14AT, MYB14; MYB14 (MYB DOMAIN PROTEIN 14); DNA binding / transcription factor||ATMYB102, ATM4; ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor | GO:0009733|response to auxin stimulus;GO:0003677|DNA binding;GO:0009611|response to wounding;GO:0003700|transcription factor activity;GO:0009651|response to salt stress;GO:0009753|response to jasmonic acid stimulus;GO:0009737|response to abscisic acid stimulus;GO:0045449|regulation of transcription;GO:0006970|response to osmotic stress;GO:0006355|regulation of transcription, DNA-dependent;GO:0009723|response to ethylene stimulus;GO:0009751|response to salicylic acid stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1565:Ro06_G06154,Ro06_G06155 | AT3G09470||AT3G09450 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 638 Blast hits to 624 proteins in 112 species: Archae - 2; Bacteria - 10; Metazoa - 433; Fungi - 116; Plants - 40; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).||unknown protein | ;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1566:Ro06_G06175,Ro06_G06177 | AT1G06340 | agenet domain-containing protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1567:Ro06_G06665,Ro06_G06666 | AT2G42990||AT2G04570 | GDSL-motif lipase/hydrolase family protein | GO:0016788|hydrolase activity, acting on ester bonds;GO:0012505|endomembrane system;GO:0004091|carboxylesterase activity;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1568:Ro06_G06721,Ro06_G06728 | AT1G10330 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1569:Ro06_G06738,Ro06_G06739 | AT3G04090 | SIP1;1, SIP1A; SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A); water channel | GO:0006810|transport;GO:0016020|membrane;GO:0015250|water channel activity;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1570:Ro06_G07512,Ro06_G11380 | AT5G14250 | COP13, CSN3, FUS11; COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding | GO:0005515|protein binding;GO:0009640|photomorphogenesis;GO:0010388|cullin deneddylation;GO:0000085|G2 phase of mitotic cell cycle;GO:0008180|signalosome | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1571:Ro06_G07536,Ro06_G29157 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1572:Ro06_G07564,Ro06_G07563 | AT5G26630||AT5G48670 | MADS-box protein (AGL35)||FEM111, AGL80; AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor | GO:0006355|regulation of transcription, DNA-dependent;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0003700|transcription factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1573:Ro06_G07586,Ro06_G07584 | AT3G11840||AT2G35930 | PUB24; PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase||PUB23; PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase | GO:0005488|binding;GO:0010200|response to chitin;GO:0009414|response to water deprivation;GO:0016567|protein ubiquitination;GO:0000151|ubiquitin ligase complex;GO:0051865|protein autoubiquitination;GO:0002679|respiratory burst involved in defense response;GO:0004842|ubiquitin-protein ligase activity;GO:0006952|defense response;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1574:Ro06_G07603,Ro06_G07602 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1575:Ro06_G08183,Ro06_G08182 | AT1G64830||AT1G11290 | aspartyl protease family protein||CRR22; CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease | GO:0009507|chloroplast;GO:0006508|proteolysis;GO:0004519|endonuclease activity;GO:0012505|endomembrane system;GO:0016556|mRNA modification | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1576:Ro06_G08204,Ro06_G08203 | AT5G28040||AT3G04930 | transcription regulator | GO:0030528|transcription regulator activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1577:Ro06_G08225,Ro06_G08222 | AT5G08420 | RNA binding | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1578:Ro06_G08264,Ro06_G08262 | AT3G04730||AT5G43700 | IAA16; IAA16; transcription factor||ATAUX2-11, IAA4; ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor | GO:0010583|response to cyclopentenone;GO:0009733|response to auxin stimulus;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0005634|nucleus;GO:0006417|regulation of translation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1580:Ro06_G08273,Ro06_G28789 | AT3G43270 | pectinesterase family protein | GO:0042545|cell wall modification;GO:0004857|enzyme inhibitor activity;GO:0009505|plant-type cell wall;GO:0030599|pectinesterase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1581:Ro06_G08340,Ro06_G28896 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1583:Ro06_G08405,Ro06_G08408 | AT2G32240 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 221693 Blast hits to 95553 proteins in 2574 species: Archae - 2848; Bacteria - 44259; Metazoa - 97474; Fungi - 15490; Plants - 8386; Viruses - 1229; Other Eukaryotes - 52007 (source: NCBI BLink). | GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0046686|response to cadmium ion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1584:Ro06_G08419,Ro06_G08420 | AT1G07250||AT3G21760 | UDP-glucoronosyl/UDP-glucosyl transferase family protein||UGT71C4; UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4); quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0008194|UDP-glycosyltransferase activity;GO:0008152|metabolic process;GO:0035251|UDP-glucosyltransferase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1585:Ro06_G08437,Ro06_G28532 | AT4G16660 | heat shock protein 70, putative / HSP70, putative | GO:0009507|chloroplast;GO:0005886|plasma membrane;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1586:Ro06_G08488,Ro06_G29316 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1587:Ro06_G08496,Ro06_G08500 | AT3G59200||AT3G59000 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1588:Ro06_G09081,Ro06_G28424 | AT5G62660||AT3G06240 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1590:Ro06_G09091,Ro06_G09087 | AT3G13780 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984); Has 14184 Blast hits to 8674 proteins in 364 species: Archae - 7; Bacteria - 1751; Metazoa - 6167; Fungi - 1701; Plants - 645; Viruses - 191; Other Eukaryotes - 3722 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1591:Ro06_G09092,Ro06_G09088 | AT1G17640 | RNA recognition motif (RRM)-containing protein | GO:0000166|nucleotide binding;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1592:Ro06_G09095,Ro06_G09094 | AT2G19480 | NFA02, NFA2, NAP1;2; NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding | GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1595:Ro06_G09124,Ro06_G09120 | AT1G17665 | unknown protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1596:Ro06_G09179,Ro06_G09178 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1597:Ro06_G09193,Ro06_G09192 | AT3G16970||AT2G06090 | self-incompatibility protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1598:Ro06_G09209,Ro06_G28744 | AT5G20260 | catalytic | GO:0009507|chloroplast;GO:0016020|membrane;GO:0008150|biological_process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1599:Ro06_G09721,Ro06_G09723 | AT5G14930 | SAG101; SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase | GO:0007568|aging;GO:0006629|lipid metabolic process;GO:0004091|carboxylesterase activity;GO:0005575|cellular_component;GO:0004806|triglyceride lipase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1600:Ro06_G09726,Ro06_G09727 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1601:Ro06_G09728,Ro06_G09729 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1602:Ro06_G09765,Ro06_G28039 | AT3G02340||AT4G18110 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1603:Ro06_G09799,Ro06_G09805 | AT3G27810||AT3G27785 | MYB118, ATMYB118; MYB118; DNA binding / transcription activator/ transcription factor||ATMYB21, ATMYB3, MYB21; ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21); DNA binding / transcription factor | GO:0009740|gibberellic acid mediated signaling pathway;GO:0003677|DNA binding;GO:0016563|transcription activator activity;GO:0003700|transcription factor activity;GO:0048443|stamen development;GO:0009753|response to jasmonic acid stimulus;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009867|jasmonic acid mediated signaling pathway | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1604:Ro06_G09839,Ro06_G28957 | AT3G14470 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1605:Ro06_G09906,Ro06_G09908 | AT2G37730 | fringe-related protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1608:Ro06_G10991,Ro06_G10990 | AT2G38600 | acid phosphatase class B family protein | GO:0008150|biological_process;GO:0003993|acid phosphatase activity;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1609:Ro06_G11013,Ro06_G11011 | AT3G54200 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05975.1); Has 405 Blast hits to 404 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0046658|anchored to plasma membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1610:Ro06_G11373,Ro06_G11372 | AT2G24840||AT3G04100 | AGL61, DIA; AGL61 (AGAMOUS-LIKE 61); DNA binding / transcription factor||AGL57; AGL57; DNA binding / transcription factor | GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0009559|embryo sac central cell differentiation;GO:0006355|regulation of transcription, DNA-dependent | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1611:Ro06_G11568,Ro06_G11571 | AT2G20280 | zinc finger (CCCH-type) family protein | GO:0008150|biological_process;GO:0008270|zinc ion binding;GO:0005575|cellular_component;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1612:Ro06_G11585,Ro06_G11589 | AT5G02950||AT3G09670 | PWWP domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1613:Ro06_G11593,Ro06_G29034 | AT2G43190 | ribonuclease P family protein | GO:0005655|nucleolar ribonuclease P complex;GO:0000172|ribonuclease MRP complex;GO:0030677|ribonuclease P complex;GO:0006379|mRNA cleavage;GO:0008033|tRNA processing;GO:0003723|RNA binding;GO:0004526|ribonuclease P activity;GO:0006364|rRNA processing;GO:0004540|ribonuclease activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1614:Ro06_G11597,Ro06_G11600 | AT5G02970||AT3G09690 | hydrolase, alpha/beta fold family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016787|hydrolase activity;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1615:Ro06_G11619,Ro06_G11620 | AT3G45290||AT2G39200 | MLO12, ATMLO12; MLO12 (MILDEW RESISTANCE LOCUS O 12); calmodulin binding||MLO3, ATMLO3; MLO3 (MILDEW RESISTANCE LOCUS O 3); calmodulin binding | GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0016021|integral to membrane;GO:0006952|defense response;GO:0009817|defense response to fungus, incompatible interaction;GO:0008219|cell death;GO:0010150|leaf senescence | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1617:Ro06_G11875,Ro06_G11870 | AT2G36450||AT4G25490 | HRD; HRD (HARDY); DNA binding / transcription activator/ transcription factor||CBF1, DREB1B, ATCBF1; CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor | GO:0009414|response to water deprivation;GO:0009631|cold acclimation;GO:0016563|transcription activator activity;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0050832|defense response to fungus;GO:0005634|nucleus;GO:0009409|response to cold;GO:0006355|regulation of transcription, DNA-dependent | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1620:Ro06_G13127,Ro06_G29218 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1621:Ro06_G13168,Ro06_G29213 | AT5G22820 | binding | GO:0008150|biological_process;GO:0005488|binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1623:Ro06_G13621,Ro06_G13623 | AT1G15670||AT1G80440 | kelch repeat-containing F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1624:Ro06_G13642,Ro06_G13648 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1625:Ro06_G13646,Ro06_G28324 | AT1G79930 | HSP91; HSP91; ATP binding | GO:0005886|plasma membrane;GO:0046686|response to cadmium ion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1626:Ro06_G13651,Ro06_G13652 | AT1G79950 | helicase-related | GO:0008026|ATP-dependent helicase activity;GO:0016818|hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;GO:0003677|DNA binding;GO:0004003|ATP-dependent DNA helicase activity;GO:0003676|nucleic acid binding;GO:0006139|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;GO:0006355|regulation of transcription, DNA-dependent;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1627:Ro06_G14226,Ro06_G14224 | AT2G42260 | UVI4, PYM; UVI4 (UV-B-INSENSITIVE 4) | GO:0003674|molecular_function;GO:0010091|trichome branching;GO:0005575|cellular_component;GO:0010224|response to UV-B;GO:0042023|DNA endoreduplication | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1629:Ro06_G14341,Ro06_G14342 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1631:Ro06_G14571,Ro06_G18143 | AT5G46550 | DNA-binding bromodomain-containing protein | GO:0003677|DNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1632:Ro06_G14746,Ro06_G14747 | AT3G56400 | WRKY70, ATWRKY70; WRKY70; transcription factor/ transcription repressor | GO:0010200|response to chitin;GO:0010120|camalexin biosynthetic process;GO:0031347|regulation of defense response;GO:0009759|indole glucosinolate biosynthetic process;GO:0003700|transcription factor activity;GO:0050832|defense response to fungus;GO:0009753|response to jasmonic acid stimulus;GO:0042742|defense response to bacterium;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009862|systemic acquired resistance, salicylic acid mediated signaling pathway;GO:0016564|transcription repressor activity;GO:0009864|induced systemic resistance, jasmonic acid mediated signaling pathway | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1633:Ro06_G14904,Ro06_G14903 | AT3G52820||AT3G52780 | ATPAP22, PAP22; PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase||ATPAP20, PAP20; PAP20; acid phosphatase/ protein serine/threonine phosphatase | GO:0008150|biological_process;GO:0003993|acid phosphatase activity;GO:0012505|endomembrane system;GO:0004722|protein serine/threonine phosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1634:Ro06_G15082,Ro06_G02813 | AT2G48010 | RKF3; RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase/ receptor signaling protein serine/threonine kinase | GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0004702|receptor signaling protein serine/threonine kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1636:Ro06_G15499,Ro06_G15495 | AT4G37810 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1637:Ro06_G15509,Ro06_G15510 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1638:Ro06_G15698,Ro06_G00927 | AT1G78950 | beta-amyrin synthase, putative | GO:0042300|beta-amyrin synthase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1639:Ro06_G15711,Ro06_G15709 | AT5G24740 | INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1782 Blast hits to 981 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 290; Plants - 104; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink). | GO:0008104|protein localization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1640:Ro06_G16355,Ro06_G16356 | AT3G28540||AT5G40010 | AAA-type ATPase family protein||AATP1; AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | GO:0017111|nucleoside-triphosphatase activity;GO:0005524|ATP binding;GO:0000166|nucleotide binding;GO:0016887|ATPase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1641:Ro06_G16372,Ro06_G16373 | AT3G28345 | ABC transporter family protein | GO:0005886|plasma membrane;GO:0006810|transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1642:Ro06_G16604,Ro06_G16978 | AT4G32208 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (TAIR:AT5G09590.1); Has 5503 Blast hits to 5502 proteins in 1651 species: Archae - 75; Bacteria - 3077; Metazoa - 59; Fungi - 47; Plants - 148; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1644:Ro06_G16856,Ro06_G16857 | AT1G04250||AT3G15540 | IAA19, MSG2; IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor||AXR3, IAA17; AXR3 (AUXIN RESISTANT 3); transcription factor | GO:0009733|response to auxin stimulus;GO:0009638|phototropism;GO:0003700|transcription factor activity;GO:0009734|auxin mediated signaling pathway;GO:0019005|SCF ubiquitin ligase complex;GO:0005634|nucleus;GO:0009630|gravitropism;GO:0000502|proteasome complex;GO:0008180|signalosome | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1645:Ro06_G16962,Ro06_G16960 | AT5G22380 | anac090; anac090 (Arabidopsis NAC domain containing protein 90); transcription factor | GO:0045449|regulation of transcription;GO:0005575|cellular_component;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1647:Ro06_G17296,Ro06_G17293 | AT3G07810 | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | GO:0000166|nucleotide binding;GO:0003676|nucleic acid binding;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1648:Ro06_G17310,Ro06_G28586 | AT5G26730||AT5G16920 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16920.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26730.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | GO:0005739|mitochondrion;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1655:Ro06_G18921,Ro06_G18922 | AT5G59930 | DC1 domain-containing protein / UV-B light-insensitive protein, putative | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1656:Ro06_G19068,Ro06_G19066 | AT1G17430 | hydrolase, alpha/beta fold family protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1657:Ro06_G19225,Ro06_G19220 | AT5G06740 | lectin protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1658:Ro06_G19400,Ro06_G19397 | AT3G58610 | ketol-acid reductoisomerase | GO:0009507|chloroplast;GO:0005739|mitochondrion;GO:0004455|ketol-acid reductoisomerase activity;GO:0046686|response to cadmium ion;GO:0009082|branched chain family amino acid biosynthetic process;GO:0009570|chloroplast stroma;GO:0048046|apoplast;GO:0005507|copper ion binding;GO:0009941|chloroplast envelope;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1659:Ro06_G19502,Ro06_G19498 | AT5G03820||AT5G03810 | carboxylesterase/ hydrolase, acting on ester bonds / lipase||GDSL-motif lipase/hydrolase family protein | GO:0016788|hydrolase activity, acting on ester bonds;GO:0016298|lipase activity;GO:0012505|endomembrane system;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1661:Ro06_G19514,Ro06_G19511 | AT3G53110 | LOS4; LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4); ATP-dependent helicase/ RNA helicase/ RNA-dependent ATPase | GO:0003724|RNA helicase activity;GO:0008026|ATP-dependent helicase activity;GO:0005886|plasma membrane;GO:0005635|nuclear envelope;GO:0009408|response to heat;GO:0016973|poly(A)+ mRNA export from nucleus;GO:0009737|response to abscisic acid stimulus;GO:0008186|RNA-dependent ATPase activity;GO:0009409|response to cold;GO:0005737|cytoplasm | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1662:Ro06_G19537,Ro06_G19534 | AT3G50170 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1663:Ro06_G20127,Ro06_G20128 | AT2G20610||AT5G36160 | SUR1, HLS3, RTY, ALF1, RTY1; SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase||aminotransferase-related | GO:0019761|glucosinolate biosynthetic process;GO:0016769|transferase activity, transferring nitrogenous groups;GO:0003824|catalytic activity;GO:0048830|adventitious root development;GO:0009684|indoleacetic acid biosynthetic process;GO:0019446|tyrosine catabolic process to phosphoenolpyruvate;GO:0005575|cellular_component;GO:0030170|pyridoxal phosphate binding;GO:0016846|carbon-sulfur lyase activity;GO:0001560|regulation of cell growth by extracellular stimulus;GO:0009058|biosynthetic process;GO:0008483|transaminase activity;GO:0016020|membrane;GO:0016847|1-aminocyclopropane-1-carboxylate synthase activity;GO:0006519|cellular amino acid and derivative metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1664:Ro06_G20272,Ro06_G29329 | AT4G35670||AT2G41850 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein||PGAZAT, ADPG2; PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase | GO:0009830|cell wall modification involved in abscission;GO:0010047|fruit dehiscence;GO:0010227|floral organ abscission;GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0009901|anther dehiscence;GO:0005975|carbohydrate metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1665:Ro06_G20897,Ro06_G20900 | AT3G57680 | peptidase S41 family protein | GO:0008236|serine-type peptidase activity;GO:0006508|proteolysis;GO:0005515|protein binding;GO:0009543|chloroplast thylakoid lumen;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1666:Ro06_G20906,Ro06_G20908 | AT2G41190 | amino acid transporter family protein | GO:0015171|amino acid transmembrane transporter activity;GO:0006865|amino acid transport;GO:0005886|plasma membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1667:Ro06_G20928,Ro06_G27496 | AT1G73040||AT1G52050 | jacalin lectin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1668:Ro06_G20929,Ro06_G27495 | AT1G52520 | FRS6; FRS6 (FAR1-related sequence 6); zinc ion binding | GO:0009639|response to red or far red light;GO:0008270|zinc ion binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1670:Ro06_G21316,Ro06_G11353 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1671:Ro06_G21942,Ro06_G21939 | AT5G06900 | CYP93D1; CYP93D1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1672:Ro06_G22206,Ro06_G22207 | AT4G15240||AT1G05280 | fringe-related protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0005794|Golgi apparatus;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1674:Ro06_G22343,Ro06_G28009 | AT5G03900 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 98 Blast hits to 98 proteins in 40 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | GO:0009941|chloroplast envelope | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1675:Ro06_G22344,Ro06_G28007 | AT5G03900 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 98 Blast hits to 98 proteins in 40 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | GO:0009941|chloroplast envelope | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1676:Ro06_G22425,Ro06_G22423 | AT3G02645 | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1677:Ro06_G22531,Ro06_G22532 | AT1G06320 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1678:Ro06_G22538,Ro06_G22539 | AT1G29450||AT1G29510 | SAUR68; SAUR68 (SMALL AUXIN UPREGULATED 68)||auxin-responsive protein, putative | GO:0003674|molecular_function;GO:0009733|response to auxin stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1680:Ro06_G22926,Ro06_G22929 | AT5G04680||AT3G18670 | ankyrin repeat family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 351 Blast hits to 330 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 2; Plants - 240; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0005515|protein binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1683:Ro06_G22980,Ro06_G22982 | AT1G16760||AT2G24370 | protein kinase family protein||ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0006950|response to stress;GO:0004713|protein tyrosine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1684:Ro06_G23179,Ro06_G29066 | AT1G08080 | ATACA7, ACA7; ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding | GO:0004089|carbonate dehydratase activity;GO:0006730|one-carbon metabolic process;GO:0008270|zinc ion binding;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1685:Ro06_G23621,Ro06_G28391 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1686:Ro06_G23656,Ro06_G08274 | AT3G04710||AT1G08770 | ankyrin repeat family protein||PRA1.E; PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) | GO:0003674|molecular_function;GO:0005488|binding;GO:0005783|endoplasmic reticulum;GO:0008150|biological_process;GO:0016192|vesicle-mediated transport;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1687:Ro06_G24124,Ro06_G29421 | AT3G50120 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1688:Ro06_G24385,Ro06_G28374 | AT1G73040 | jacalin lectin family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1689:Ro06_G25044,Ro06_G25045 | AT5G08139 | zinc finger (C3HC4-type RING finger) family protein | GO:0008150|biological_process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1690:Ro06_G25233,Ro06_G25234 | AT2G20710 | pentatricopeptide (PPR) repeat-containing protein | GO:0005739|mitochondrion;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1692:Ro06_G26000,Ro06_G28450 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1694:Ro06_G26338,Ro06_G26340 | AT3G07870||AT4G12560 | F-box family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0005575|cellular_component;GO:0031348|negative regulation of defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1696:Ro06_G26596,Ro06_G26597 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1697:Ro06_G26710,Ro06_G28235 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1698:Ro06_G26711,Ro06_G22971 | AT2G24130 | leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1699:Ro06_G27358,Ro06_G18952 | AT3G13890 | MYB26, ATMYB26, MS35; ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor | GO:0009834|secondary cell wall biogenesis;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0009739|response to gibberellin stimulus;GO:0005634|nucleus;GO:0009901|anther dehiscence;GO:0006355|regulation of transcription, DNA-dependent | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1701:Ro06_G28016,Ro06_G28015 | AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1702:Ro06_G28034,Ro06_G09760 | AT5G40490 | RNA recognition motif (RRM)-containing protein | GO:0000166|nucleotide binding;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1703:Ro06_G28040,Ro06_G09778 | AT5G41350||AT1G55530 | zinc finger (C3HC4-type RING finger) family protein | GO:0005739|mitochondrion;GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1705:Ro06_G28066,Ro06_G28067 | AT5G07610 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1706:Ro06_G28070,Ro06_G03794 | AT5G14130 | peroxidase, putative | GO:0006979|response to oxidative stress;GO:0004601|peroxidase activity;GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1709:Ro06_G28166,Ro06_G19406 | AT3G58600 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT1G03900.1); Has 329 Blast hits to 329 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | GO:0006897|endocytosis;GO:0003674|molecular_function;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1710:Ro06_G28265,Ro06_G16550 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1712:Ro06_G28293,Ro06_G28294 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1713:Ro06_G28305,Ro06_G14585 | AT5G35380 | protein kinase family protein | GO:0016301|kinase activity;GO:0005575|cellular_component;GO:0006468|protein amino acid phosphorylation;GO:0006950|response to stress | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1719:Ro06_G28388,Ro06_G22301 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1720:Ro06_G28399,Ro06_G28406 | AT5G55490 | ATGEX1, GEX1; GEX1 (GAMETE EXPRESSED PROTEIN 1) | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005887|integral to plasma membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1722:Ro06_G28404,Ro06_G28403 | AT1G15000 | scpl50; scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1723:Ro06_G28417,Ro06_G28418 | AT2G40610||AT5G39300 | ATEXPA25, EXP25, ATEXP25, ATHEXP ALPHA 1.18; ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25)||ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11; ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) | GO:0005576|extracellular region;GO:0006949|syncytium formation;GO:0012505|endomembrane system;GO:0009831|plant-type cell wall modification during multidimensional cell growth;GO:0009826|unidimensional cell growth;GO:0009828|plant-type cell wall loosening | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1724:Ro06_G28429,Ro06_G28430 | AT3G23880||AT3G06240 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005634|nucleus;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1725:Ro06_G28438,Ro06_G26643 | AT3G14130 | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative | GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008152|metabolic process;GO:0010181|FMN binding;GO:0009055|electron carrier activity;GO:0008891|glycolate oxidase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1727:Ro06_G28443,Ro06_G19058 | AT1G67025 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G18390.1); Has 101 Blast hits to 88 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1728:Ro06_G28446,Ro06_G25082 | AT1G72480 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01070.1); Has 422 Blast hits to 420 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 101; Plants - 83; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005794|Golgi apparatus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1729:Ro06_G28476,Ro06_G28488 | AT1G11620 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1731:Ro06_G28484,Ro06_G11086 | AT1G53840||AT3G14310 | ATPME3; ATPME3; pectinesterase||ATPME1; ATPME1; pectinesterase | GO:0005576|extracellular region;GO:0009624|response to nematode;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0009505|plant-type cell wall;GO:0030599|pectinesterase activity;GO:0005737|cytoplasm;GO:0042545|cell wall modification;GO:0016020|membrane;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1733:Ro06_G28522,Ro06_G28521 | AT2G30860 | ATGSTF9, GLUTTR, ATGSTF7; ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9); copper ion binding / glutathione binding / glutathione peroxidase/ glutathione transferase | GO:0009507|chloroplast;GO:0043295|glutathione binding;GO:0009579|thylakoid;GO:0046686|response to cadmium ion;GO:0009570|chloroplast stroma;GO:0005886|plasma membrane;GO:0048046|apoplast;GO:0009407|toxin catabolic process;GO:0004602|glutathione peroxidase activity;GO:0042742|defense response to bacterium;GO:0005507|copper ion binding;GO:0006952|defense response;GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0010043|response to zinc ion;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1735:Ro06_G28535,Ro06_G28533 | AT3G23330||AT4G02750 | pentatricopeptide (PPR) repeat-containing protein | GO:0005739|mitochondrion;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1737:Ro06_G28635,Ro06_G05567 | AT1G77520||AT5G54160 | O-methyltransferase family 2 protein||ATOMT1, OMT1; ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3'-O-methyltransferase/ quercetin 3-O-methyltransferase | GO:0051555|flavonol biosynthetic process;GO:0005737|cytoplasm;GO:0005886|plasma membrane;GO:0047763|caffeate O-methyltransferase activity;GO:0009809|lignin biosynthetic process;GO:0005634|nucleus;GO:0033799|myricetin 3'-O-methyltransferase activity;GO:0008171|O-methyltransferase activity;GO:0030755|quercetin 3-O-methyltransferase activity;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1738:Ro06_G28638,Ro06_G28640 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1739:Ro06_G28644,Ro06_G05576 | AT3G18670 | ankyrin repeat family protein | GO:0005515|protein binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1740:Ro06_G28654,Ro06_G04893 | AT1G69120||AT5G15800 | AP1, AGL7; AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor||SEP1, AGL2; SEP1 (SEPALLATA1); DNA binding / transcription factor | GO:0005515|protein binding;GO:0016563|transcription activator activity;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0009908|flower development;GO:0009933|meristem structural organization;GO:0048481|ovule development;GO:0005634|nucleus;GO:0045941|positive regulation of transcription;GO:0046982|protein heterodimerization activity;GO:0010076|maintenance of floral meristem identity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1741:Ro06_G28655,Ro06_G04887 | AT5G15780||AT5G38880 | pollen Ole e 1 allergen and extensin family protein||unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1743:Ro06_G28665,Ro06_G28667 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1745:Ro06_G28743,Ro06_G09202 | AT1G79790 | haloacid dehalogenase-like hydrolase family protein | GO:0009507|chloroplast;GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1749:Ro06_G28862,Ro06_G28876 | AT4G18930 | cyclic phosphodiesterase | GO:0005737|cytoplasm;GO:0006388|tRNA splicing, via endonucleolytic cleavage and ligation;GO:0004112|cyclic-nucleotide phosphodiesterase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1751:Ro06_G28886,Ro06_G28887 | AT2G47280||AT5G26810 | pectinesterase family protein||pectinesterase | GO:0012505|endomembrane system;GO:0009505|plant-type cell wall;GO:0030599|pectinesterase activity;GO:0042545|cell wall modification;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1753:Ro06_G28909,Ro06_G28907 | AT5G24910 | CYP714A1; CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1756:Ro06_G28963,Ro06_G28964 | AT3G09270 | ATGSTU8; ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase | GO:0005737|cytoplasm;GO:0004364|glutathione transferase activity;GO:0009407|toxin catabolic process;GO:0046686|response to cadmium ion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1759:Ro06_G29030,Ro06_G29035 | AT3G50950||AT3G14470 | disease resistance protein (CC-NBS-LRR class), putative||disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1760:Ro06_G29070,Ro06_G29071 | AT1G08080||AT1G08065 | ATACA5, ACA5; ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding||ATACA7, ACA7; ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding | GO:0004089|carbonate dehydratase activity;GO:0006730|one-carbon metabolic process;GO:0008270|zinc ion binding;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1765:Ro06_G29198,Ro06_G26598 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1766:Ro06_G29266,Ro06_G19219 | AT3G12100 | cation efflux family protein / metal tolerance protein, putative | GO:0009624|response to nematode;GO:0008324|cation transmembrane transporter activity;GO:0015562|efflux transmembrane transporter activity;GO:0006812|cation transport;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1767:Ro06_G29311,Ro06_G22701 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1768:Ro06_G29345,Ro06_G29346 | AT3G21090||AT1G17840 | WBC11, ABCG11, DSO, COF1, ATWBC11; WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter||ABC transporter family protein | GO:0042626|ATPase activity, coupled to transmembrane movement of substances;GO:0005886|plasma membrane;GO:0009897|external side of plasma membrane;GO:0015908|fatty acid transport;GO:0015245|fatty acid transporter activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1772:Ro07_G04312,Ro07_G33372 | AT1G32760||AT4G10630 | glutaredoxin family protein | GO:0045454|cell redox homeostasis;GO:0009507|chloroplast;GO:0015035|protein disulfide oxidoreductase activity;GO:0005575|cellular_component;GO:0009055|electron carrier activity;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1773:Ro07_G04350,Ro07_G33330 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1774:Ro07_G04351,Ro07_G33341 | AT1G63830||AT5G41390 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 12019 Blast hits to 5816 proteins in 448 species: Archae - 6; Bacteria - 1151; Metazoa - 4980; Fungi - 1500; Plants - 2605; Viruses - 338; Other Eukaryotes - 1439 (source: NCBI BLink).||proline-rich family protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1775:Ro07_G04401,Ro07_G33296 | AT4G01210 | transferase, transferring glycosyl groups | GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0016757|transferase activity, transferring glycosyl groups | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1776:Ro07_G04624,Ro07_G04622 | AT5G51160 | ankyrin repeat family protein | GO:0005515|protein binding;GO:0005575|cellular_component;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1777:Ro07_G04635,Ro07_G04634 | AT1G09320||AT2G47220 | 3' exoribonuclease family domain 1 protein-related||agenet domain-containing protein | GO:0009507|chloroplast;GO:0016491|oxidoreductase activity;GO:0006396|RNA processing;GO:0008150|biological_process;GO:0005634|nucleus;GO:0008152|metabolic process;GO:0003723|RNA binding;GO:0000175|3'-5'-exoribonuclease activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1779:Ro07_G04659,Ro07_G04658 | AT2G30500||AT5G58320 | kinase interacting family protein||kinase interacting protein-related | ;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1780:Ro07_G04735,Ro07_G04733 | AT3G56200 | amino acid transporter family protein | GO:0015171|amino acid transmembrane transporter activity;GO:0006865|amino acid transport;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1781:Ro07_G04737,Ro07_G04736 | AT3G10980 | unknown protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1782:Ro07_G04756,Ro07_G04755 | AT2G40320 | unknown protein | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1783:Ro07_G05961,Ro07_G33469 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1784:Ro07_G06786,Ro07_G14047 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1786:Ro07_G06855,Ro07_G34671 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1787:Ro07_G06877,Ro07_G34775 | AT5G24314 | PDE225, PTAC7; PTAC7 | GO:0009508|plastid chromosome;GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1788:Ro07_G07748,Ro07_G07753 | AT5G06080 | LBD33; LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33) | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1791:Ro07_G07824,Ro07_G07826 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1793:Ro07_G07864,Ro07_G07868 | AT2G19760||AT2G19770 | PFN1, PRF1; PRF1 (PROFILIN 1); actin binding||PRF5; PRF5 (PROFILIN5); actin binding / actin monomer binding | GO:0005737|cytoplasm;GO:0009524|phragmoplast;GO:0005819|spindle;GO:0003785|actin monomer binding;GO:0003779|actin binding;GO:0005730|nucleolus;GO:0005886|plasma membrane;GO:0030036|actin cytoskeleton organization;GO:0005634|nucleus;GO:0009826|unidimensional cell growth;GO:0008154|actin polymerization or depolymerization;GO:0015629|actin cytoskeleton;GO:0007010|cytoskeleton organization;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1794:Ro07_G07879,Ro07_G07880 | AT2G46770 | NST1, EMB2301, ANAC043; EMB2301 (EMBRYO DEFECTIVE 2301); transcription activator/ transcription factor | GO:0009834|secondary cell wall biogenesis;GO:0010047|fruit dehiscence;GO:0016563|transcription activator activity;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development;GO:0009809|lignin biosynthetic process;GO:0009901|anther dehiscence;GO:0005575|cellular_component;GO:0009793|embryonic development ending in seed dormancy | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1795:Ro07_G08952,Ro07_G08951 | AT5G64260 | EXL2; EXL2 (EXORDIUM LIKE 2) | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0009505|plant-type cell wall;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1797:Ro07_G09018,Ro07_G34788 | AT4G27585 | band 7 family protein | GO:0008150|biological_process;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1798:Ro07_G09031,Ro07_G09030 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1800:Ro07_G09424,Ro07_G09425 | AT5G52400 | CYP715A1; CYP715A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1802:Ro07_G09488,Ro07_G09490 | AT5G52020||AT4G25490 | AP2 domain-containing protein||CBF1, DREB1B, ATCBF1; CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor | GO:0009507|chloroplast;GO:0009414|response to water deprivation;GO:0009631|cold acclimation;GO:0016563|transcription activator activity;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0050832|defense response to fungus;GO:0005634|nucleus;GO:0009409|response to cold | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1803:Ro07_G09496,Ro07_G09501 | AT2G22410||AT4G38010 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1804:Ro07_G09549,Ro07_G09545 | AT1G56200 | emb1303; emb1303 (embryo defective 1303) | GO:0009507|chloroplast;GO:0003674|molecular_function;GO:0009793|embryonic development ending in seed dormancy | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1805:Ro07_G10902,Ro07_G34292 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1806:Ro07_G11495,Ro07_G11499 | AT5G04960||AT3G10720 | pectinesterase, putative||pectinesterase family protein | GO:0012505|endomembrane system;GO:0009505|plant-type cell wall;GO:0030599|pectinesterase activity;GO:0004857|enzyme inhibitor activity;GO:0042545|cell wall modification;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1807:Ro07_G11501,Ro07_G11503 | AT5G04940 | SUVH1; SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase | GO:0005634|nucleus;GO:0042054|histone methyltransferase activity;GO:0040029|regulation of gene expression, epigenetic | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1809:Ro07_G12016,Ro07_G34485 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1810:Ro07_G12026,Ro07_G12025 | AT1G49290 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1811:Ro07_G12285,Ro07_G34636 | AT5G61510 | NADP-dependent oxidoreductase, putative | GO:0005488|binding;GO:0009644|response to high light intensity;GO:0003824|catalytic activity;GO:0016491|oxidoreductase activity;GO:0008270|zinc ion binding;GO:0030154|cell differentiation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1812:Ro07_G12925,Ro07_G12922 | AT5G48020||AT3G20100 | unknown protein||CYP705A19; CYP705A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0003674|molecular_function;GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0019825|oxygen binding;GO:0005575|cellular_component;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1813:Ro07_G13041,Ro07_G13039 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1814:Ro07_G13242,Ro07_G13245 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1815:Ro07_G13251,Ro07_G34361 | AT5G07610 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1816:Ro07_G13262,Ro07_G13263 | AT3G11660||AT5G06330 | NHL1; NHL1||hairpin-responsive protein, putative (HIN1) | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0051607|defense response to virus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1817:Ro07_G13267,Ro07_G13270 | AT2G38770 | EMB2765; EMB2765 (EMBRYO DEFECTIVE 2765) | GO:0009507|chloroplast;GO:0005886|plasma membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1818:Ro07_G13277,Ro07_G13280 | AT2G21100||AT1G58170 | disease resistance-responsive protein-related / dirigent protein-related | GO:0009807|lignan biosynthetic process;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1819:Ro07_G13592,Ro07_G13593 | AT2G27040||AT5G21150 | AGO4, OCP11; AGO4 (ARGONAUTE 4); nucleic acid binding||PAZ domain-containing protein / piwi domain-containing protein | GO:0031048|chromatin silencing by small RNA;GO:0015030|Cajal body;GO:0005730|nucleolus;GO:0009816|defense response to bacterium, incompatible interaction;GO:0003676|nucleic acid binding;GO:0006342|chromatin silencing;GO:0030422|production of siRNA involved in RNA interference;GO:0005719|nuclear euchromatin;GO:0006306|DNA methylation;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1822:Ro07_G13978,Ro07_G13976 | AT5G52420 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1823:Ro07_G13992,Ro07_G13989 | AT4G25640 | MATE efflux family protein | GO:0009812|flavonoid metabolic process;GO:0015238|drug transmembrane transporter activity;GO:0005886|plasma membrane;GO:0009555|pollen development;GO:0015297|antiporter activity;GO:0009901|anther dehiscence;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1825:Ro07_G14017,Ro07_G14016 | AT1G47330||AT5G52790 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT2G14520.1); Has 6970 Blast hits to 6717 proteins in 1361 species: Archae - 64; Bacteria - 4382; Metazoa - 390; Fungi - 183; Plants - 125; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).||CBS domain-containing protein-related | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1826:Ro07_G14021,Ro07_G34701 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1827:Ro07_G14589,Ro07_G14291 | AT1G08230 | amino acid transporter family protein | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1828:Ro07_G14638,Ro07_G33561 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1829:Ro07_G14930,Ro07_G14934 | AT1G50870||AT1G47790 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1830:Ro07_G15013,Ro07_G15017 | AT3G14610||AT3G14680 | CYP72A14; CYP72A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding||CYP72A7; CYP72A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1833:Ro07_G15532,Ro07_G33878 | AT5G17610 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1834:Ro07_G15539,Ro07_G33864 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1837:Ro07_G16515,Ro07_G16513 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1838:Ro07_G17024,Ro07_G17020 | AT5G04410||AT3G10490 | anac051; anac052 (Arabidopsis NAC domain containing protein 52); transcription factor||NAC2, anac078; NAC2; transcription factor | GO:0009644|response to high light intensity;GO:0005730|nucleolus;GO:0016563|transcription activator activity;GO:0009555|pollen development;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development;GO:0005634|nucleus;GO:0045941|positive regulation of transcription;GO:0005737|cytoplasm;GO:0009962|regulation of flavonoid biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1840:Ro07_G17032,Ro07_G33946 | AT1G29200 | unknown protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1841:Ro07_G17033,Ro07_G17029 | AT5G58330 | malate dehydrogenase (NADP), chloroplast, putative | GO:0044262|cellular carbohydrate metabolic process;GO:0016616|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0006096|glycolysis | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1842:Ro07_G17394,Ro07_G17393 | AT3G60580||AT2G17180 | zinc finger (C2H2 type) family protein | GO:0009507|chloroplast;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1843:Ro07_G17524,Ro07_G17522 | AT4G15390||AT3G26040 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1844:Ro07_G17538,Ro07_G17537 | AT3G60400||AT3G22320 | ATRPABC24.3, RPB5A, NRPB5, NRPD5; NRPB5; DNA binding / DNA-directed RNA polymerase||mitochondrial transcription termination factor-related / mTERF-related | GO:0003674|molecular_function;GO:0005665|DNA-directed RNA polymerase II, core complex;GO:0003677|DNA binding;GO:0000418|DNA-directed RNA polymerase IV complex;GO:0003899|DNA-directed RNA polymerase activity;GO:0008150|biological_process;GO:0006350|transcription;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1845:Ro07_G18658,Ro07_G34436 | AT2G35910 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1847:Ro07_G18777,Ro07_G18775 | AT3G55330||AT2G39470 | PPL1; PPL1 (PsbP-like protein 1); calcium ion binding||PPL2; PPL2 (PsbP-like protein 2); calcium ion binding | GO:0009507|chloroplast;GO:0009579|thylakoid;GO:0030095|chloroplast photosystem II;GO:0009654|oxygen evolving complex;GO:0015979|photosynthesis;GO:0009543|chloroplast thylakoid lumen;GO:0005509|calcium ion binding;GO:0009535|chloroplast thylakoid membrane;GO:0031977|thylakoid lumen | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1848:Ro07_G18796,Ro07_G18795 | AT3G55230||AT1G07730 | disease resistance-responsive family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1849:Ro07_G19448,Ro07_G19452 | AT2G29200||AT3G10360 | APUM4; APUM4 (Arabidopsis Pumilio 4); RNA binding / binding||APUM1; APUM1 (Arabidopsis Pumilio 1); RNA binding / binding | GO:0008150|biological_process;GO:0005488|binding;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1850:Ro07_G19449,Ro07_G19453 | AT5G02140 | thaumatin-like protein, putative | GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0051707|response to other organism | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1851:Ro07_G19627,Ro07_G04407 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1853:Ro07_G19875,Ro07_G19878 | AT3G11950 | prenyltransferase/ zinc ion binding | GO:0009941|chloroplast envelope;GO:0009507|chloroplast;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1856:Ro07_G20440,Ro07_G33248 | AT2G46890 | oxidoreductase, acting on the CH-CH group of donors | GO:0006629|lipid metabolic process;GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0005737|cytoplasm;GO:0016627|oxidoreductase activity, acting on the CH-CH group of donors | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1857:Ro07_G20803,Ro07_G20802 | AT2G45420||AT2G45410 | LBD19; LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)||LBD18; LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) | GO:0008150|biological_process;GO:0005634|nucleus;GO:0005575|cellular_component;GO:0010089|xylem development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1858:Ro07_G21102,Ro07_G21103 | AT1G07570||AT2G28930 | APK1B; APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase||APK1A, APK1; APK1A; kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0005886|plasma membrane;GO:0004713|protein tyrosine kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1859:Ro07_G21207,Ro07_G33967 | AT1G74470 | geranylgeranyl reductase | GO:0009507|chloroplast;GO:0045550|geranylgeranyl reductase activity;GO:0015995|chlorophyll biosynthetic process;GO:0009941|chloroplast envelope;GO:0009535|chloroplast thylakoid membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1862:Ro07_G21914,Ro07_G33436 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1863:Ro07_G21922,Ro07_G21921 | AT4G25420 | GA5, GA20OX1, AT2301, ATGA20OX1; GA20OX1; gibberellin 20-oxidase | GO:0009740|gibberellic acid mediated signaling pathway;GO:0009686|gibberellin biosynthetic process;GO:0045544|gibberellin 20-oxidase activity;GO:0048575|short-day photoperiodism, flowering;GO:0009908|flower development;GO:0009739|response to gibberellin stimulus;GO:0009826|unidimensional cell growth;GO:0005737|cytoplasm | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1864:Ro07_G21930,Ro07_G21927 | AT2G45660||AT2G45650 | AGL20, SOC1; AGL20 (AGAMOUS-LIKE 20); transcription factor||AGL6; AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor | GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0010228|vegetative to reproductive phase transition of meristem;GO:0005634|nucleus;GO:0048437|floral organ development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1865:Ro07_G22033,Ro07_G17104 | AT5G14990 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G34730.1); Has 6898 Blast hits to 4935 proteins in 410 species: Archae - 63; Bacteria - 379; Metazoa - 3405; Fungi - 417; Plants - 182; Viruses - 15; Other Eukaryotes - 2437 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1867:Ro07_G22200,Ro07_G22198 | AT3G12270 | ATPRMT3, PRMT3; PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3); methyltransferase/ zinc ion binding | GO:0008270|zinc ion binding;GO:0008152|metabolic process;GO:0008168|methyltransferase activity;GO:0005622|intracellular | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1869:Ro07_G22420,Ro07_G34137 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1871:Ro07_G22784,Ro07_G22782 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1873:Ro07_G23200,Ro07_G23197 | AT3G14240 | subtilase family protein | GO:0006508|proteolysis;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1874:Ro07_G23201,Ro07_G23198 | AT5G67090 | subtilase family protein | GO:0006508|proteolysis;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1876:Ro07_G23947,Ro07_G34352 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1877:Ro07_G23985,Ro07_G33991 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1880:Ro07_G24485,Ro07_G34280 | AT3G27890 | NQR; NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase | GO:0009507|chloroplast;GO:0008752|FMN reductase activity;GO:0009570|chloroplast stroma;GO:0005886|plasma membrane;GO:0009651|response to salt stress;GO:0042742|defense response to bacterium | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1884:Ro07_G24568,Ro07_G24567 | AT1G27370||AT1G02065 | SPL8; SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding||squamosa promoter-binding protein-like 10 (SPL10) | GO:0010358|leaf shaping;GO:0009556|microsporogenesis;GO:0016563|transcription activator activity;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0009554|megasporogenesis;GO:0048510|regulation of timing of transition from vegetative to reproductive phase | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1885:Ro07_G25063,Ro07_G33830 | AT4G27490 | 3' exoribonuclease family domain 1-containing protein | GO:0006396|RNA processing;GO:0000175|3'-5'-exoribonuclease activity;GO:0005575|cellular_component;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1886:Ro07_G25177,Ro07_G33885 | AT5G17590 | prothymosin alpha-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1887:Ro07_G25178,Ro07_G33887 | AT5G17580 | phototropic-responsive NPH3 family protein | GO:0009416|response to light stimulus;GO:0005515|protein binding;GO:0005575|cellular_component;GO:0004871|signal transducer activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1888:Ro07_G25181,Ro07_G33892 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1889:Ro07_G25184,Ro07_G33888 | AT2G31210 | basic helix-loop-helix (bHLH) family protein | GO:0045449|regulation of transcription;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0003700|transcription factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1890:Ro07_G25528,Ro07_G19072 | AT1G07570 | APK1A, APK1; APK1A; kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0005886|plasma membrane;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1892:Ro07_G25728,Ro07_G26431 | AT1G02100 | leucine carboxyl methyltransferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0008168|methyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1896:Ro07_G26119,Ro07_G33922 | AT2G17030 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1897:Ro07_G26602,Ro07_G27689 | AT4G13440 | calcium-binding EF hand family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0005509|calcium ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1898:Ro07_G27083,Ro07_G12621 | AT2G36290 | hydrolase, alpha/beta fold family protein | GO:0008150|biological_process;GO:0016787|hydrolase activity;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1900:Ro07_G27653,Ro07_G34168 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1901:Ro07_G27798,Ro07_G33591 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1904:Ro07_G33260,Ro07_G07857 | AT2G46820 | PTAC8, TMP14, PSAP, PSI-P; PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding | GO:0009507|chloroplast;GO:0009579|thylakoid;GO:0030093|chloroplast photosystem I;GO:0009941|chloroplast envelope;GO:0003677|DNA binding;GO:0009508|plastid chromosome;GO:0009773|photosynthetic electron transport in photosystem I;GO:0009535|chloroplast thylakoid membrane;GO:0009295|nucleoid | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1905:Ro07_G33284,Ro07_G33285 | AT4G01070 | GT72B1, UGT72B1; GT72B1; UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups | GO:0016757|transferase activity, transferring glycosyl groups;GO:0042178|xenobiotic catabolic process;GO:0009636|response to toxin;GO:0009651|response to salt stress;GO:0008194|UDP-glycosyltransferase activity;GO:0035251|UDP-glucosyltransferase activity;GO:0006805|xenobiotic metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1906:Ro07_G33307,Ro07_G33314 | AT5G65940 | CHY1; CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase | GO:0009733|response to auxin stimulus;GO:0003860|3-hydroxyisobutyryl-CoA hydrolase activity;GO:0006574|valine catabolic process;GO:0009409|response to cold;GO:0006635|fatty acid beta-oxidation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1910:Ro07_G33385,Ro07_G33388 | AT1G47890 | AtRLP7; AtRLP7 (Receptor Like Protein 7); kinase/ protein binding | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1912:Ro07_G33437,Ro07_G33438 | AT3G17675||AT2G02850 | copper ion binding / electron carrier||ARPN; ARPN (PLANTACYANIN); copper ion binding / electron carrier | GO:0048046|apoplast;GO:0009055|electron carrier activity;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1913:Ro07_G33439,Ro07_G33446 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1914:Ro07_G33454,Ro07_G33453 | AT2G45510 | CYP704A2; CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1915:Ro07_G33457,Ro07_G23407 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1916:Ro07_G33461,Ro07_G23408 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1917:Ro07_G33482,Ro07_G33485 | AT2G45240 | MAP1A; MAP1A (METHIONINE AMINOPEPTIDASE 1A); aminopeptidase/ metalloexopeptidase | GO:0005737|cytoplasm;GO:0031365|N-terminal protein amino acid modification;GO:0016485|protein processing | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1918:Ro07_G33538,Ro07_G33537 | AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1919:Ro07_G33544,Ro07_G33553 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1920:Ro07_G33574,Ro07_G33578 | AT3G14460||AT3G14470 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1921:Ro07_G33585,Ro07_G25135 | AT5G48760||AT4G13170 | 60S ribosomal protein L13A (RPL13aC)||60S ribosomal protein L13A (RPL13aD) | GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0022626|cytosolic ribosome;GO:0015934|large ribosomal subunit;GO:0005840|ribosome;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1922:Ro07_G33632,Ro07_G14828 | AT5G24910 | CYP714A1; CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1923:Ro07_G33639,Ro07_G33640 | AT3G60240 | EIF4G, CUM2; EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G); translation initiation factor | GO:0009615|response to virus;GO:0003743|translation initiation factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1924:Ro07_G33664,Ro07_G33663 | AT1G50180 | disease resistance protein (CC-NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1925:Ro07_G33687,Ro07_G22415 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1926:Ro07_G33699,Ro07_G18575 | AT3G25010 | AtRLP41; AtRLP41 (Receptor Like Protein 41); kinase/ protein binding | GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response;GO:0007165|signal transduction;GO:0016301|kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1927:Ro07_G33702,Ro07_G33706 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1930:Ro07_G33737,Ro07_G27683 | AT2G47980 | SCC3, ATSCC3; SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding | GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1932:Ro07_G33786,Ro07_G18078 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1936:Ro07_G33862,Ro07_G15541 | AT5G35930 | AMP-dependent synthetase and ligase family protein | GO:0000036|acyl carrier activity;GO:0048037|cofactor binding;GO:0003824|catalytic activity;GO:0016208|AMP binding;GO:0008152|metabolic process;GO:0031177|phosphopantetheine binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1937:Ro07_G33863,Ro07_G15540 | AT3G03530 | NPC4; NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, acting on ester bonds / phospholipase C | GO:0016788|hydrolase activity, acting on ester bonds;GO:0005886|plasma membrane;GO:0004629|phospholipase C activity;GO:0009395|phospholipid catabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1939:Ro07_G33868,Ro07_G15530 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1940:Ro07_G33869,Ro07_G15529 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1941:Ro07_G33870,Ro07_G15528 | AT2G35040 | AICARFT/IMPCHase bienzyme family protein | GO:0009507|chloroplast;GO:0003824|catalytic activity;GO:0009570|chloroplast stroma;GO:0003937|IMP cyclohydrolase activity;GO:0004643|phosphoribosylaminoimidazolecarboxamide formyltransferase activity;GO:0009409|response to cold;GO:0006164|purine nucleotide biosynthetic process;GO:0010319|stromule | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1942:Ro07_G33874,Ro07_G33880 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1943:Ro07_G33881,Ro07_G25180 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1944:Ro07_G33883,Ro07_G25182 | AT1G65032 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1946:Ro07_G33971,Ro07_G21206 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1947:Ro07_G33987,Ro07_G27967 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1953:Ro07_G34022,Ro07_G19557 | AT5G36001||AT2G35910 | zinc finger (C3HC4-type RING finger) family protein||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 53 Blast hits to 51 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1957:Ro07_G34053,Ro07_G34052 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1961:Ro07_G34163,Ro07_G14602 | AT2G26460 | RED family protein | GO:0003674|molecular_function;GO:0005634|nucleus;GO:0008380|RNA splicing | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1963:Ro07_G34176,Ro07_G22627 | AT3G54380 | SAC3/GANP family protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1964:Ro07_G34190,Ro07_G17248 | AT2G26710 | BAS1, CYP734A1, CYP72B1; BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase | GO:0008395|steroid hydroxylase activity;GO:0010268|brassinosteroid homeostasis;GO:0012505|endomembrane system;GO:0019825|oxygen binding;GO:0009741|response to brassinosteroid stimulus;GO:0009416|response to light stimulus;GO:0016131|brassinosteroid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1965:Ro07_G34217,Ro07_G01992 | AT2G33680 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1966:Ro07_G34236,Ro07_G34238 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1967:Ro07_G34254,Ro07_G34257 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1968:Ro07_G34305,Ro07_G34303 | AT5G45480||AT5G45540 | unknown protein | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0005575|cellular_component;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1970:Ro07_G34345,Ro07_G23937 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1971:Ro07_G34347,Ro07_G23019 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1973:Ro07_G34359,Ro07_G13257 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1975:Ro07_G34387,Ro07_G34388 | AT3G14470 | disease resistance protein (NBS-LRR class), putative | GO:0006915|apoptosis;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1979:Ro07_G34439,Ro07_G34441 | AT5G65940 | CHY1; CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase | GO:0009733|response to auxin stimulus;GO:0003860|3-hydroxyisobutyryl-CoA hydrolase activity;GO:0006574|valine catabolic process;GO:0009409|response to cold;GO:0006635|fatty acid beta-oxidation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1980:Ro07_G34455,Ro07_G22036 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1981:Ro07_G34474,Ro07_G34473 | AT4G30230 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1983:Ro07_G34533,Ro07_G34534 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1986:Ro07_G34563,Ro07_G34564 | AT4G12560 | F-box family protein | GO:0005737|cytoplasm;GO:0003674|molecular_function;GO:0005634|nucleus;GO:0031348|negative regulation of defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1987:Ro07_G34572,Ro07_G34571 | AT2G40060 | protein binding / structural molecule | GO:0006886|intracellular protein transport;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0009941|chloroplast envelope;GO:0005198|structural molecule activity;GO:0016192|vesicle-mediated transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1991:Ro07_G34691,Ro07_G34690 | AT5G24030 | SLAH3; SLAH3 (SLAC1 HOMOLOGUE 3); transporter | GO:0005886|plasma membrane;GO:0005215|transporter activity;GO:0016021|integral to membrane;GO:0006873|cellular ion homeostasis | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1992:Ro07_G34692,Ro07_G34693 | AT2G19480 | NFA02, NFA2, NAP1;2; NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding | GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1993:Ro07_G34700,Ro07_G34699 | AT3G48950 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0005975|carbohydrate metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA1995:Ro07_G34738,Ro07_G09505 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA631:Ro01_G00894,Ro01_G29575 | AT4G01010||AT5G53130 | CNGC1, ATCNGC1; CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel||ATCNGC13, CNGC13; ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel | GO:0005216|ion channel activity;GO:0005221|intracellular cyclic nucleotide activated cation channel activity;GO:0006811|ion transport;GO:0006813|potassium ion transport;GO:0006816|calcium ion transport;GO:0005886|plasma membrane;GO:0005516|calmodulin binding;GO:0030551|cyclic nucleotide binding;GO:0005261|cation channel activity;GO:0005242|inward rectifier potassium channel activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA634:Ro01_G00934,Ro01_G00932 | AT3G50380 | INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 239 Blast hits to 235 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 71; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | GO:0005739|mitochondrion;GO:0008104|protein localization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA636:Ro01_G00948,Ro01_G00946 | AT3G50830 | COR413-PM2, ATCOR413-PM2; COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) | GO:0005886|plasma membrane;GO:0003674|molecular_function;GO:0006950|response to stress | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA637:Ro01_G00968,Ro01_G00967 | AT2G23770||AT5G66631 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G16010.1); Has 7784 Blast hits to 2776 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 51; Plants - 7639; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).||protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | GO:0003674|molecular_function;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0006468|protein amino acid phosphorylation;GO:0016998|cell wall macromolecule catabolic process;GO:0016301|kinase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA638:Ro01_G01017,Ro01_G01016 | AT4G09190||AT5G49610 | F-box family protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA639:Ro01_G01039,Ro01_G29670 | AT5G49555 | amine oxidase-related | GO:0005739|mitochondrion;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA641:Ro01_G01106,Ro01_G01103 | AT5G44230||AT1G47580 | pentatricopeptide (PPR) repeat-containing protein||lipoyltransferase, putative | ;GO:0017118|lipoyltransferase activity;GO:0003824|catalytic activity;GO:0006464|protein modification process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA642:Ro01_G01181,Ro01_G01179 | AT5G66200 | ARO2; ARO2 (ARMADILLO REPEAT ONLY 2); binding | GO:0008150|biological_process;GO:0005886|plasma membrane;GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA644:Ro01_G01196,Ro01_G01193 | AT5G66150 | glycosyl hydrolase family 38 protein | GO:0004553|hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0003824|catalytic activity;GO:0004559|alpha-mannosidase activity;GO:0008270|zinc ion binding;GO:0006013|mannose metabolic process;GO:0012505|endomembrane system;GO:0030246|carbohydrate binding;GO:0015923|mannosidase activity;GO:0005975|carbohydrate metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA646:Ro01_G01264,Ro01_G29623 | AT4G35730 | unknown protein | GO:0005739|mitochondrion;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA647:Ro01_G01265,Ro01_G01267 | AT4G35690 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA649:Ro01_G01276,Ro01_G01274 | AT2G17650||AT1G20560 | AAE1; AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding||AMP-dependent synthetase and ligase family protein | GO:0005739|mitochondrion;GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA650:Ro01_G02903,Ro01_G02905 | AT4G29740||AT5G56970 | CKX4, ATCKX4; CKX4 (CYTOKININ OXIDASE 4); amine oxidase/ cytokinin dehydrogenase||CKX3, ATCKX3; CKX3 (CYTOKININ OXIDASE 3); amine oxidase/ cytokinin dehydrogenase | GO:0009823|cytokinin catabolic process;GO:0012505|endomembrane system;GO:0019139|cytokinin dehydrogenase activity;GO:0008131|amine oxidase activity;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA652:Ro01_G02975,Ro01_G02976 | AT1G22640 | ATMYB3, MYB3; MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor | GO:0003677|DNA binding;GO:0009892|negative regulation of metabolic process;GO:0003700|transcription factor activity;GO:0009651|response to salt stress;GO:0009800|cinnamic acid biosynthetic process;GO:0009751|response to salicylic acid stimulus;GO:0009737|response to abscisic acid stimulus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA653:Ro01_G03148,Ro01_G30295 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA654:Ro01_G03176,Ro01_G30302 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA656:Ro01_G04164,Ro01_G04165 | AT4G37280 | MRG family protein | GO:0003682|chromatin binding;GO:0005634|nucleus;GO:0000785|chromatin;GO:0006333|chromatin assembly or disassembly | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA657:Ro01_G04177,Ro01_G04178 | AT1G80730||AT1G24625 | ZFP7; ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding||ZFP1, ATZFP1; ZFP1 (ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding | GO:0009640|photomorphogenesis;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA660:Ro01_G05024,Ro01_G29476 | AT2G24130 | leucine-rich repeat transmembrane protein kinase, putative | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0005515|protein binding;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA662:Ro01_G05134,Ro01_G29487 | AT2G12400 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA664:Ro01_G05363,Ro01_G05360 | AT3G53690 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA665:Ro01_G05364,Ro01_G05358 | AT5G42390 | metalloendopeptidase | GO:0009507|chloroplast;GO:0006508|proteolysis;GO:0046872|metal ion binding;GO:0003824|catalytic activity;GO:0009570|chloroplast stroma;GO:0008270|zinc ion binding;GO:0005739|mitochondrion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA667:Ro01_G07678,Ro01_G29525 | AT5G19650 | ATOFP8, OFP8; OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) | GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA669:Ro01_G10311,Ro01_G29503 | AT5G20270||AT3G42180 | HHP1; HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1); receptor||catalytic/ transferase, transferring glycosyl groups | GO:0009744|response to sucrose stimulus;GO:0004872|receptor activity;GO:0003824|catalytic activity;GO:0016757|transferase activity, transferring glycosyl groups;GO:0012505|endomembrane system;GO:0009651|response to salt stress;GO:0009725|response to hormone stimulus;GO:0008150|biological_process;GO:0016021|integral to membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA670:Ro01_G10369,Ro01_G29506 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA671:Ro01_G10731,Ro01_G10732 | AT2G04240 | XERICO; XERICO; protein binding / zinc ion binding | GO:0010200|response to chitin;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0009687|abscisic acid metabolic process;GO:0009651|response to salt stress;GO:0009739|response to gibberellin stimulus;GO:0006970|response to osmotic stress | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA672:Ro01_G10751,Ro01_G23015 | AT4G39640 | GGT1; GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase | GO:0009505|plant-type cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA673:Ro01_G11183,Ro01_G29804 | AT5G65710||AT5G65700 | HSL2; HSL2 (HAESA-Like 2); ATP binding / kinase/ protein serine/threonine kinase||BAM1; BAM1 (BARELY ANY MERISTEM 1); ATP binding / kinase/ protein serine/threonine kinase | GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway;GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0048653|anther development;GO:0005886|plasma membrane;GO:0012505|endomembrane system;GO:0048229|gametophyte development;GO:0010480|microsporocyte differentiation;GO:0048437|floral organ development;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0010075|regulation of meristem growth;GO:0009934|regulation of meristem structural organization | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA674:Ro01_G11190,Ro01_G11191 | AT4G37850 | basic helix-loop-helix (bHLH) family protein | GO:0045449|regulation of transcription;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0003700|transcription factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA675:Ro01_G11224,Ro01_G11222 | AT2G46920 | POL; POL (poltergeist); protein serine/threonine phosphatase | GO:0009934|regulation of meristem structural organization;GO:0005886|plasma membrane;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0018345|protein palmitoylation;GO:0005543|phospholipid binding;GO:0004722|protein serine/threonine phosphatase activity;GO:0010074|maintenance of meristem identity;GO:0018377|protein myristoylation;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA676:Ro01_G11234,Ro01_G11233 | AT3G62080 | SNF7 family protein | GO:0003674|molecular_function;GO:0015031|protein transport;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA678:Ro01_G11276,Ro01_G30188 | AT2G47115 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA679:Ro01_G11734,Ro01_G11732 | AT5G33340 | CDR1; CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase | GO:0006508|proteolysis;GO:0048046|apoplast;GO:0042742|defense response to bacterium;GO:0010310|regulation of hydrogen peroxide metabolic process;GO:0010337|regulation of salicylic acid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA680:Ro01_G12208,Ro01_G12204 | AT3G46530||AT2G20900 | DGK5, ATDGK5; diacylglycerol kinase, putative||RPP13; RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding | GO:0004143|diacylglycerol kinase activity;GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;GO:0009814|defense response, incompatible interaction;GO:0005886|plasma membrane;GO:0009626|plant-type hypersensitive response;GO:0006952|defense response;GO:0005737|cytoplasm;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA682:Ro01_G14699,Ro01_G27117 | AT2G45695||AT3G61113 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221), Ubiquitin-related modifier 1 (InterPro:IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45695.1); Has 242 Blast hits to 242 proteins in 127 species: Archae - 2; Bacteria - 0; Metazoa - 93; Fungi - 74; Plants - 18; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).||FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221), Ubiquitin-related modifier 1 (InterPro:IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61113.1); Has 238 Blast hits to 238 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA683:Ro01_G14726,Ro01_G14725 | AT3G15355 | UBC25, PFU1; UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase | GO:0043687|post-translational protein modification;GO:0051246|regulation of protein metabolic process;GO:0019787|small conjugating protein ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA685:Ro01_G17048,Ro01_G23095 | AT3G45040 | phosphatidate cytidylyltransferase family protein | GO:0004168|dolichol kinase activity;GO:0004605|phosphatidate cytidylyltransferase activity;GO:0012505|endomembrane system;GO:0008654|phospholipid biosynthetic process;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA687:Ro01_G18244,Ro01_G18242 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA688:Ro01_G18245,Ro01_G18243 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA689:Ro01_G18290,Ro01_G18288 | AT5G37710 | lipase class 3 family protein / calmodulin-binding heat-shock protein, putative | GO:0006629|lipid metabolic process;GO:0005886|plasma membrane;GO:0016042|lipid catabolic process;GO:0005516|calmodulin binding;GO:0004806|triglyceride lipase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA690:Ro01_G18752,Ro01_G18749 | AT3G48750||AT3G09980 | CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1; CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase||unknown protein | GO:0008284|positive regulation of cell proliferation;GO:0007126|meiosis;GO:0042023|DNA endoreduplication;GO:0009574|preprophase band;GO:0003674|molecular_function;GO:0009409|response to cold;GO:0005829|cytosol;GO:0009793|embryonic development ending in seed dormancy;GO:0000910|cytokinesis;GO:0009555|pollen development;GO:0008150|biological_process;GO:0005634|nucleus;GO:0005737|cytoplasm;GO:0016301|kinase activity;GO:0005515|protein binding;GO:0005886|plasma membrane;GO:0004693|cyclin-dependent protein kinase activity;GO:0048229|gametophyte development;GO:0004672|protein kinase activity;GO:0010005|cortical microtubule, transverse to long axis;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA692:Ro01_G19753,Ro01_G19752 | AT1G65890||AT1G66120 | AAE12; AAE12 (ACYL ACTIVATING ENZYME 12); catalytic||acyl-activating enzyme 11 (AAE11) | GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA693:Ro01_G19822,Ro01_G19819 | AT4G37170 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA694:Ro01_G19824,Ro01_G29709 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA695:Ro01_G20318,Ro01_G11687 | AT5G64830 | programmed cell death 2 C-terminal domain-containing protein | GO:0005737|cytoplasm;GO:0006915|apoptosis;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA696:Ro01_G21043,Ro01_G21044 | AT2G26690 | nitrate transporter (NTP2) | GO:0009753|response to jasmonic acid stimulus;GO:0005215|transporter activity;GO:0016020|membrane;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA699:Ro01_G22504,Ro01_G22506 | AT1G58030 | CAT2; CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter | GO:0015171|amino acid transmembrane transporter activity;GO:0006865|amino acid transport;GO:0005886|plasma membrane;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA700:Ro01_G23091,Ro01_G23101 | AT5G63960 | EMB2780; EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding | GO:0006139|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;GO:0003677|DNA binding;GO:0003676|nucleic acid binding;GO:0006260|DNA replication;GO:0005634|nucleus;GO:0003887|DNA-directed DNA polymerase activity;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA701:Ro01_G23092,Ro01_G23100 | AT5G63970 | copine-related | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0005575|cellular_component;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA702:Ro01_G23106,Ro01_G30324 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA704:Ro01_G23503,Ro01_G24770 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA705:Ro01_G24349,Ro01_G13304 | AT1G70520 | protein kinase family protein | GO:0005886|plasma membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA706:Ro01_G24764,Ro01_G24765 | AT2G46980 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA708:Ro01_G25168,Ro01_G30111 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA709:Ro01_G25221,Ro01_G25222 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA710:Ro01_G25302,Ro01_G25300 | AT1G66650||AT5G37930 | seven in absentia (SINA) family protein||seven in absentia (SINA) protein, putative | GO:0016567|protein ubiquitination;GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0005622|intracellular;GO:0007275|multicellular organismal development;GO:0004842|ubiquitin-protein ligase activity;GO:0005634|nucleus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA714:Ro01_G26347,Ro01_G30066 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA716:Ro01_G27106,Ro01_G27735 | AT5G37550 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA717:Ro01_G27136,Ro01_G22722 | AT3G02860 | zinc ion binding | GO:0008150|biological_process;GO:0008270|zinc ion binding;GO:0005622|intracellular | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA718:Ro01_G27252,Ro01_G11266 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA719:Ro01_G27556,Ro01_G30053 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA721:Ro01_G27726,Ro01_G30411 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA722:Ro01_G27846,Ro01_G04286 | AT5G65820 | pentatricopeptide (PPR) repeat-containing protein | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA723:Ro01_G27857,Ro01_G27405 | AT5G17860||AT5G17850 | CAX7; CAX7 (calcium exchanger 7); calcium:sodium antiporter/ cation:cation antiporter||cation exchanger, putative (CAX8) | GO:0005432|calcium:sodium antiporter activity;GO:0012505|endomembrane system;GO:0016021|integral to membrane;GO:0006812|cation transport;GO:0015491|cation:cation antiporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA727:Ro01_G29544,Ro01_G29543 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA728:Ro01_G29549,Ro01_G29548 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA729:Ro01_G29557,Ro01_G00811 | AT5G53110 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 118 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA730:Ro01_G29563,Ro01_G29562 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA731:Ro01_G29567,Ro01_G29569 | AT4G26220 | caffeoyl-CoA 3-O-methyltransferase, putative | GO:0008171|O-methyltransferase activity;GO:0005829|cytosol | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA733:Ro01_G29612,Ro01_G29613 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA734:Ro01_G29649,Ro01_G29650 | AT1G47960 | C/VIF1, ATC/VIF1; C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor | GO:0046910|pectinesterase inhibitor activity;GO:0008150|biological_process;GO:0004857|enzyme inhibitor activity;GO:0030599|pectinesterase activity;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA735:Ro01_G29661,Ro01_G29660 | AT1G75900 | family II extracellular lipase 3 (EXL3) | GO:0008415|acyltransferase activity;GO:0005576|extracellular region;GO:0016298|lipase activity;GO:0004091|carboxylesterase activity;GO:0019953|sexual reproduction | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA736:Ro01_G29695,Ro01_G23896 | AT3G18990||AT5G66980 | transcriptional factor B3 family protein||VRN1, REM39; VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor | GO:0010048|vernalization response;GO:0003677|DNA binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0005654|nucleoplasm;GO:0006355|regulation of transcription, DNA-dependent;GO:0016564|transcription repressor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA737:Ro01_G29712,Ro01_G29729 | AT4G37070 | PLP1, PLA IVA; patatin, putative | GO:0005575|cellular_component;GO:0008152|metabolic process;GO:0045735|nutrient reservoir activity;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA738:Ro01_G29715,Ro01_G26387 | AT1G49570 | peroxidase, putative | GO:0006979|response to oxidative stress;GO:0004601|peroxidase activity;GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA740:Ro01_G29734,Ro01_G29736 | AT5G42930||AT5G67050 | lipase class 3 family protein||triacylglycerol lipase | GO:0005575|cellular_component;GO:0004806|triglyceride lipase activity;GO:0016020|membrane;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA741:Ro01_G29751,Ro01_G29752 | AT5G67130 | phospholipase C/ phosphoric diester hydrolase | GO:0008081|phosphoric diester hydrolase activity;GO:0046658|anchored to plasma membrane;GO:0006629|lipid metabolic process;GO:0005886|plasma membrane;GO:0004629|phospholipase C activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA742:Ro01_G29762,Ro01_G29766 | AT4G37370 | CYP81D8; CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | GO:0005506|iron ion binding;GO:0005886|plasma membrane;GO:0005783|endoplasmic reticulum;GO:0019825|oxygen binding;GO:0004497|monooxygenase activity;GO:0009055|electron carrier activity;GO:0020037|heme binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA743:Ro01_G29779,Ro01_G29780 | AT1G72740||AT1G17520 | DNA-binding protein, putative||DNA-binding family protein / histone H1/H5 family protein | GO:0006334|nucleosome assembly;GO:0003700|transcription factor activity;GO:0045449|regulation of transcription;GO:0005634|nucleus;GO:0000786|nucleosome | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA745:Ro01_G29790,Ro01_G29789 | AT5G65840 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | GO:0009507|chloroplast;GO:0009570|chloroplast stroma | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA746:Ro01_G29799,Ro01_G04288 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA747:Ro01_G29800,Ro01_G29801 | AT3G24130 | pectinesterase family protein | GO:0012505|endomembrane system;GO:0009505|plant-type cell wall;GO:0030599|pectinesterase activity;GO:0042545|cell wall modification;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA748:Ro01_G29802,Ro01_G04285 | AT3G49740 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0005488|binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA752:Ro01_G29916,Ro01_G11685 | AT5G09920 | RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4; NRPB4; DNA-directed RNA polymerase | GO:0006366|transcription from RNA polymerase II promoter;GO:0005665|DNA-directed RNA polymerase II, core complex;GO:0003899|DNA-directed RNA polymerase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA753:Ro01_G29918,Ro01_G11676 | AT1G09815 | POLD4; POLD4 (POLYMERASE DELTA 4); DNA-directed DNA polymerase | GO:0003887|DNA-directed DNA polymerase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA754:Ro01_G29930,Ro01_G25855 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA755:Ro01_G29933,Ro01_G29936 | AT3G18670 | ankyrin repeat family protein | GO:0005515|protein binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA756:Ro01_G29952,Ro01_G29953 | AT2G47240 | CER8, LACS1; long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein | GO:0010143|cutin biosynthetic process;GO:0010025|wax biosynthetic process;GO:0006633|fatty acid biosynthetic process;GO:0004467|long-chain-fatty-acid-CoA ligase activity;GO:0005575|cellular_component;GO:0031957|very-long-chain-fatty-acid-CoA ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA764:Ro01_G30031,Ro01_G30030 | AT1G09680 | pentatricopeptide (PPR) repeat-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA770:Ro01_G30133,Ro01_G30132 | AT2G04420 | nucleic acid binding | GO:0005739|mitochondrion;GO:0008150|biological_process;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA774:Ro01_G30180,Ro01_G30179 | AT2G17050||AT4G12010 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA776:Ro01_G30224,Ro01_G30225 | AT5G66980||AT1G13260 | transcriptional factor B3 family protein||RAV1; RAV1; DNA binding / transcription factor/ transcription repressor | GO:0009910|negative regulation of flower development;GO:0048527|lateral root development;GO:0003677|DNA binding;GO:0012505|endomembrane system;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0048366|leaf development;GO:0006355|regulation of transcription, DNA-dependent;GO:0016564|transcription repressor activity;GO:0009741|response to brassinosteroid stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA779:Ro01_G30250,Ro01_G16887 | AT3G51970||AT5G55380 | AtSAT1; AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1); acyltransferase||membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related | GO:0008150|biological_process;GO:0008415|acyltransferase activity;GO:0005575|cellular_component;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA780:Ro01_G30263,Ro01_G16890 | AT4G33490 | aspartic-type endopeptidase | GO:0006508|proteolysis;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA783:Ro01_G30284,Ro01_G21299 | AT3G20970 | NFU4, ATNFU2; NFU4; structural molecule | GO:0005739|mitochondrion;GO:0005198|structural molecule activity;GO:0016226|iron-sulfur cluster assembly | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA784:Ro01_G30285,Ro01_G30287 | AT4G38540 | monooxygenase, putative (MO2) | GO:0008152|metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA786:Ro01_G30379,Ro01_G30380 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA788:Ro01_G30401,Ro01_G30398 | AT1G33100||AT1G33110 | MATE efflux family protein | GO:0006855|drug transmembrane transport;GO:0016020|membrane;GO:0015238|drug transmembrane transporter activity;GO:0015297|antiporter activity;GO:0005215|transporter activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA801:Ro02_G00530,Ro02_G00529 | AT4G24220 | VEP1, AWI31; VEP1 (VEIN PATTERNING 1); binding / catalytic | GO:0005488|binding;GO:0003824|catalytic activity;GO:0010051|xylem and phloem pattern formation;GO:0005575|cellular_component;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA802:Ro02_G00567,Ro02_G00565 | AT5G24080||AT4G00340 | protein kinase family protein||RLK4; RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); protein kinase/ sugar binding | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0004713|protein tyrosine kinase activity;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA804:Ro02_G00650,Ro02_G00649 | AT1G21270 | WAK2; WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0009992|cellular water homeostasis;GO:0005886|plasma membrane;GO:0004672|protein kinase activity;GO:0009826|unidimensional cell growth;GO:0005509|calcium ion binding;GO:0006468|protein amino acid phosphorylation;GO:0009311|oligosaccharide metabolic process;GO:0005524|ATP binding;GO:0009751|response to salicylic acid stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA805:Ro02_G00766,Ro02_G34876 | AT3G20190||AT5G35390 | leucine-rich repeat transmembrane protein kinase, putative | GO:0016324|apical plasma membrane;GO:0004674|protein serine/threonine kinase activity;GO:0005524|ATP binding;GO:0016301|kinase activity;GO:0045177|apical part of cell;GO:0006468|protein amino acid phosphorylation;GO:0007169|transmembrane receptor protein tyrosine kinase signaling pathway | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA806:Ro02_G01368,Ro02_G01366 | AT4G02320||AT1G02810 | pectinesterase family protein | GO:0012505|endomembrane system;GO:0004857|enzyme inhibitor activity;GO:0030599|pectinesterase activity;GO:0009505|plant-type cell wall;GO:0042545|cell wall modification;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA808:Ro02_G01412,Ro02_G01409 | AT5G08640 | FLS; FLS (FLAVONOL SYNTHASE); flavonol synthase | GO:0045431|flavonol synthase activity;GO:0005575|cellular_component;GO:0009813|flavonoid biosynthetic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA810:Ro02_G01513,Ro02_G35012 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA811:Ro02_G01524,Ro02_G01521 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA812:Ro02_G01526,Ro02_G01523 | AT1G21520 | unknown protein | GO:0006979|response to oxidative stress;GO:0003674|molecular_function;GO:0005783|endoplasmic reticulum | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA814:Ro02_G02344,Ro02_G02343 | AT5G42800 | DFR, TT3, M318; DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase | GO:0045552|dihydrokaempferol 4-reductase activity;GO:0009718|anthocyanin biosynthetic process;GO:0042406|extrinsic to endoplasmic reticulum membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA815:Ro02_G02426,Ro02_G02425 | AT1G65430||AT1G47550 | unknown protein||zinc finger protein-related | GO:0000145|exocyst;GO:0005886|plasma membrane;GO:0005622|intracellular;GO:0008150|biological_process;GO:0004842|ubiquitin-protein ligase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA816:Ro02_G02477,Ro02_G34805 | AT1G80840 | WRKY40, ATWRKY40; WRKY40; transcription factor | GO:0010200|response to chitin;GO:0031347|regulation of defense response;GO:0005515|protein binding;GO:0003700|transcription factor activity;GO:0009751|response to salicylic acid stimulus;GO:0050691|regulation of defense response to virus by host;GO:0050832|defense response to fungus;GO:0042742|defense response to bacterium;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent;GO:0009611|response to wounding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA818:Ro02_G03951,Ro02_G03950 | AT2G42430||AT3G58190 | LBD29, ASL16; LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)||LBD16, ASL18; LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) | GO:0005634|nucleus;GO:0010311|lateral root formation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA819:Ro02_G03978,Ro02_G03972 | AT4G19540 | INDL; INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) | GO:0005739|mitochondrion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA820:Ro02_G03980,Ro02_G03962 | AT4G12610 | RAP74, ATRAP74; transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein | GO:0009507|chloroplast;GO:0003702|RNA polymerase II transcription factor activity;GO:0003824|catalytic activity;GO:0016563|transcription activator activity;GO:0003677|DNA binding;GO:0005634|nucleus;GO:0045941|positive regulation of transcription;GO:0016986|transcription initiation factor activity;GO:0006367|transcription initiation from RNA polymerase II promoter | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA821:Ro02_G03982,Ro02_G35111 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA823:Ro02_G04003,Ro02_G04000 | AT5G43700||AT3G23050 | IAA7, AXR2; IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor||ATAUX2-11, IAA4; ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor | GO:0010583|response to cyclopentenone;GO:0040008|regulation of growth;GO:0009414|response to water deprivation;GO:0009733|response to auxin stimulus;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0009753|response to jasmonic acid stimulus;GO:0005634|nucleus;GO:0019005|SCF ubiquitin ligase complex;GO:0009630|gravitropism;GO:0006417|regulation of translation;GO:0000502|proteasome complex;GO:0009611|response to wounding;GO:0008180|signalosome | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA824:Ro02_G04063,Ro02_G04060 | AT1G06340||AT1G09320 | agenet domain-containing protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0009507|chloroplast;GO:0003723|RNA binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA825:Ro02_G04467,Ro02_G04469 | AT4G33000 | CBL10, ATCBL10; CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding | GO:0042538|hyperosmotic salinity response;GO:0005886|plasma membrane;GO:0050801|ion homeostasis;GO:0005509|calcium ion binding;GO:0005737|cytoplasm;GO:0009705|plant-type vacuole membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA826:Ro02_G04468,Ro02_G34942 | AT2G29120 | ATGLR2.7, GLR2.7; ATGLR2.7; intracellular ligand-gated ion channel | GO:0005217|intracellular ligand-gated ion channel activity;GO:0009416|response to light stimulus;GO:0006874|cellular calcium ion homeostasis;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA827:Ro02_G04523,Ro02_G04524 | AT3G13950 | unknown protein | GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA828:Ro02_G04574,Ro02_G22368 | AT4G13170 | 60S ribosomal protein L13A (RPL13aC) | GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0005840|ribosome;GO:0022625|cytosolic large ribosomal subunit;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA830:Ro02_G05448,Ro02_G05449 | AT4G35220 | cyclase family protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA831:Ro02_G05482,Ro02_G05483 | AT2G15230 | ATLIP1; ATLIP1 (Arabidopsis thaliana lipase 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase | GO:0016787|hydrolase activity;GO:0005615|extracellular space;GO:0004806|triglyceride lipase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA832:Ro02_G06616,Ro02_G06623 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA833:Ro02_G06634,Ro02_G06638 | AT4G16295 | SPH1; SPH1 (S-PROTEIN HOMOLOGUE 1) | GO:0009875|pollen-pistil interaction;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA835:Ro02_G06640,Ro02_G35189 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA837:Ro02_G06646,Ro02_G22849 | AT5G41550||AT4G11170 | disease resistance protein (TIR-NBS-LRR class), putative | GO:0031224|intrinsic to membrane;GO:0005739|mitochondrion;GO:0010193|response to ozone;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0017111|nucleoside-triphosphatase activity;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding;GO:0000166|nucleotide binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA838:Ro02_G07044,Ro02_G07046 | AT3G62730 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA839:Ro02_G07981,Ro02_G07984 | AT1G29670||AT1G71250 | GDSL-motif lipase/hydrolase family protein | GO:0009507|chloroplast;GO:0006629|lipid metabolic process;GO:0016298|lipase activity;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0004091|carboxylesterase activity;GO:0016788|hydrolase activity, acting on ester bonds;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA841:Ro02_G07993,Ro02_G36056 | AT4G38760 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA842:Ro02_G08001,Ro02_G07999 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA843:Ro02_G08023,Ro02_G08022 | AT5G48140||AT3G07840 | polygalacturonase, putative / pectinase, putative | GO:0004650|polygalacturonase activity;GO:0012505|endomembrane system;GO:0005975|carbohydrate metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA844:Ro02_G08032,Ro02_G36042 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA845:Ro02_G09608,Ro02_G35073 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA846:Ro02_G09613,Ro02_G35068 | AT2G47850 | zinc finger (CCCH-type) family protein | GO:0008150|biological_process;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA848:Ro02_G09638,Ro02_G09639 | AT5G35960||AT2G48010 | protein kinase, putative||RKF3; RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase/ receptor signaling protein serine/threonine kinase | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0004702|receptor signaling protein serine/threonine kinase activity;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA849:Ro02_G09643,Ro02_G35085 | AT4G03000 | protein binding / zinc ion binding | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0005575|cellular_component;GO:0008150|biological_process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA850:Ro02_G09691,Ro02_G09693 | AT4G02860 | catalytic | GO:0009058|biosynthetic process;GO:0005575|cellular_component;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA851:Ro02_G10299,Ro02_G10301 | AT1G76740 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA852:Ro02_G10438,Ro02_G10441 | AT3G26040 | transferase family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0016747|transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016740|transferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA853:Ro02_G10942,Ro02_G10939 | AT3G07510 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA854:Ro02_G10943,Ro02_G10941 | AT4G12850||AT3G07500 | far-red impaired responsive family protein / FAR1 family protein | GO:0009639|response to red or far red light;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA855:Ro02_G10963,Ro02_G10960 | AT4G36860 | zinc ion binding | GO:0005886|plasma membrane;GO:0008270|zinc ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA856:Ro02_G10967,Ro02_G10966 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA859:Ro02_G12704,Ro02_G35255 | AT2G17220 | protein kinase, putative | GO:0004713|protein tyrosine kinase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA860:Ro02_G12810,Ro02_G35372 | AT1G17980 | nucleotidyltransferase family protein | GO:0005515|protein binding;GO:0005634|nucleus;GO:0016779|nucleotidyltransferase activity;GO:0043631|RNA polyadenylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA861:Ro02_G12819,Ro02_G35369 | AT3G02950||AT5G16790 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tho complex subunit 7 (InterPro:IPR018018), Tho complex subunit 7/Mft1p (InterPro:IPR008501); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16790.1); Has 2049 Blast hits to 1787 proteins in 271 species: Archae - 31; Bacteria - 158; Metazoa - 1041; Fungi - 168; Plants - 75; Viruses - 26; Other Eukaryotes - 550 (source: NCBI BLink).||EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Tho complex subunit 7 (InterPro:IPR018018), Tho complex subunit 7/Mft1p (InterPro:IPR008501); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02950.1); Has 1782 Blast hits to 1524 proteins in 231 species: Archae - 15; Bacteria - 107; Metazoa - 987; Fungi - 119; Plants - 63; Viruses - 25; Other Eukaryotes - 466 (source: NCBI BLink). | ;GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA863:Ro02_G13096,Ro02_G13095 | AT5G09330 | anac082; anac082 (Arabidopsis NAC domain containing protein 82); transcription factor | GO:0045449|regulation of transcription;GO:0005575|cellular_component;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA864:Ro02_G13740,Ro02_G35147 | AT4G08850 | kinase | GO:0005886|plasma membrane;GO:0016020|membrane;GO:0016301|kinase activity;GO:0006468|protein amino acid phosphorylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA865:Ro02_G13746,Ro02_G13743 | AT5G46050 | ATPTR3, PTR3; PTR3 (PEPTIDE TRANSPORTER 3); dipeptide transporter/ transporter/ tripeptide transporter | GO:0043201|response to leucine;GO:0016020|membrane;GO:0042538|hyperosmotic salinity response;GO:0042939|tripeptide transport;GO:0042936|dipeptide transporter activity;GO:0009751|response to salicylic acid stimulus;GO:0009753|response to jasmonic acid stimulus;GO:0009737|response to abscisic acid stimulus;GO:0042742|defense response to bacterium;GO:0042938|dipeptide transport;GO:0042937|tripeptide transporter activity;GO:0005215|transporter activity;GO:0009611|response to wounding;GO:0006857|oligopeptide transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA867:Ro02_G13764,Ro02_G13761 | AT3G09790 | UBQ8; UBQ8; protein binding | GO:0005773|vacuole;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA868:Ro02_G13765,Ro02_G13762 | AT5G44070 | CAD1, ARA8, ATPCS1, PCS1; CAD1 (CADMIUM SENSITIVE 1); cadmium ion binding / copper ion binding / glutathione gamma-glutamylcysteinyltransferase | GO:0046685|response to arsenic;GO:0046686|response to cadmium ion;GO:0042344|indole glucosinolate catabolic process;GO:0046938|phytochelatin biosynthetic process;GO:0042742|defense response to bacterium;GO:0016756|glutathione gamma-glutamylcysteinyltransferase activity;GO:0046870|cadmium ion binding;GO:0005575|cellular_component;GO:0052544|callose deposition in cell wall during defense response;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA870:Ro02_G14988,Ro02_G35931 | AT2G15730 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA871:Ro02_G15087,Ro02_G21756 | AT1G34300 | lectin protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0005886|plasma membrane;GO:0005529|sugar binding;GO:0004672|protein kinase activity;GO:0030246|carbohydrate binding;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA872:Ro02_G15090,Ro02_G12707 | AT4G38260 | unknown protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA873:Ro02_G15453,Ro02_G16181 | AT2G16390 | DRD1, CHR35, DMS1; DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding | GO:0003677|DNA binding;GO:0003676|nucleic acid binding;GO:0004386|helicase activity;GO:0030422|production of siRNA involved in RNA interference;GO:0006306|DNA methylation;GO:0005524|ATP binding;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA874:Ro02_G15469,Ro02_G15466 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA876:Ro02_G15882,Ro02_G15883 | AT3G19615 | unknown protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA877:Ro02_G16187,Ro02_G16188 | AT5G23530 | AtCXE18; AtCXE18 (Arabidopsis thaliana carboxyesterase 18); carboxylesterase | GO:0004091|carboxylesterase activity;GO:0009860|pollen tube growth | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA878:Ro02_G16201,Ro02_G16204 | AT4G39150||AT2G21510 | DNAJ heat shock N-terminal domain-containing protein | GO:0006457|protein folding;GO:0005575|cellular_component;GO:0051082|unfolded protein binding;GO:0031072|heat shock protein binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA880:Ro02_G16551,Ro02_G35878 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA881:Ro02_G17700,Ro02_G17701 | AT1G76880 | trihelix DNA-binding protein, putative | GO:0045449|regulation of transcription;GO:0003700|transcription factor activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA882:Ro02_G18398,Ro02_G18400 | AT1G47670 | amino acid transporter family protein | GO:0015171|amino acid transmembrane transporter activity;GO:0006865|amino acid transport;GO:0005886|plasma membrane;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA883:Ro02_G18476,Ro02_G18474 | AT2G21250||AT2G21260 | mannose 6-phosphate reductase (NADPH-dependent), putative | GO:0016491|oxidoreductase activity;GO:0055114|oxidation reduction;GO:0046686|response to cadmium ion | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA884:Ro02_G18479,Ro02_G35697 | AT2G16530||AT1G72590 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein | GO:0003865|3-oxo-5-alpha-steroid 4-dehydrogenase activity;GO:0006629|lipid metabolic process;GO:0012505|endomembrane system;GO:0005783|endoplasmic reticulum;GO:0016021|integral to membrane;GO:0005737|cytoplasm;GO:0016627|oxidoreductase activity, acting on the CH-CH group of donors | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA885:Ro02_G19283,Ro02_G19288 | AT4G35160||AT2G31580 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species: Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source: NCBI BLink).||O-methyltransferase family 2 protein | GO:0003674|molecular_function;GO:0008150|biological_process;GO:0008171|O-methyltransferase activity;GO:0005575|cellular_component;GO:0046983|protein dimerization activity;GO:0005829|cytosol;GO:0008168|methyltransferase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA887:Ro02_G20096,Ro02_G20097 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA888:Ro02_G20107,Ro02_G20108 | AT5G42440 | protein kinase family protein | GO:0004674|protein serine/threonine kinase activity;GO:0016301|kinase activity;GO:0012505|endomembrane system;GO:0004672|protein kinase activity;GO:0006468|protein amino acid phosphorylation;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA889:Ro02_G20582,Ro02_G21496 | AT1G32500 | ATNAP6; ATNAP6 (NON-INTRINSIC ABC PROTEIN 6); protein binding / transporter | GO:0009507|chloroplast;GO:0009536|plastid;GO:0009793|embryonic development ending in seed dormancy;GO:0005515|protein binding;GO:0006810|transport;GO:0010027|thylakoid membrane organization;GO:0005215|transporter activity;GO:0016226|iron-sulfur cluster assembly | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA891:Ro02_G20782,Ro02_G35945 | AT4G25000 | ATAMY1, AMY1; AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase | GO:0005576|extracellular region;GO:0048046|apoplast;GO:0009737|response to abscisic acid stimulus;GO:0009739|response to gibberellin stimulus;GO:0004556|alpha-amylase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA892:Ro02_G20828,Ro02_G20829 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA893:Ro02_G20847,Ro02_G27901 | AT4G01600 | GRAM domain-containing protein / ABA-responsive protein-related | GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA894:Ro02_G21318,Ro02_G25561 | AT4G34320 | unknown protein | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA895:Ro02_G21640,Ro02_G21639 | AT2G16570||AT4G34740 | ATASE, ATASE1; ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1); amidophosphoribosyltransferase||ATASE2, CIA1, ATPURF2; ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase | GO:0009507|chloroplast;GO:0009113|purine base biosynthetic process;GO:0008152|metabolic process;GO:0004044|amidophosphoribosyltransferase activity;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA897:Ro02_G22068,Ro02_G12808 | AT5G12080 | MSL10; MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel | GO:0008381|mechanically-gated ion channel activity;GO:0005886|plasma membrane;GO:0016020|membrane;GO:0050982|detection of mechanical stimulus | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA901:Ro02_G23835,Ro02_G20588 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA902:Ro02_G23839,Ro02_G20585 | AT5G64500 | membrane protein-related | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA904:Ro02_G25070,Ro02_G25952 | AT1G43245 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); Has 432 Blast hits to 430 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 80; Plants - 47; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA905:Ro02_G25087,Ro02_G25086 | AT2G14170 | ALDH6B2; ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase | GO:0005739|mitochondrion;GO:0006979|response to oxidative stress;GO:0004028|3-chloroallyl aldehyde dehydrogenase activity;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA906:Ro02_G25160,Ro02_G14997 | AT2G15780 | glycine-rich protein | GO:0012505|endomembrane system;GO:0009055|electron carrier activity;GO:0005507|copper ion binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA907:Ro02_G25362,Ro02_G25364 | AT5G64420 | DNA polymerase V family | GO:0003677|DNA binding;GO:0006260|DNA replication;GO:0006350|transcription;GO:0003887|DNA-directed DNA polymerase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA908:Ro02_G25371,Ro02_G25368 | AT1G50030 | TOR; TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding | GO:0009507|chloroplast;GO:0005515|protein binding;GO:0016303|1-phosphatidylinositol-3-kinase activity;GO:0009793|embryonic development ending in seed dormancy | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA909:Ro02_G25562,Ro02_G25563 | AT4G34330 | unknown protein | GO:0003674|molecular_function;GO:0005575|cellular_component;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA914:Ro02_G27821,Ro02_G20971 | AT1G34060 | alliinase family protein | GO:0016846|carbon-sulfur lyase activity;GO:0030170|pyridoxal phosphate binding;GO:0012505|endomembrane system;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA917:Ro02_G34890,Ro02_G00709 | AT4G28940 | catalytic | GO:0009116|nucleoside metabolic process;GO:0012505|endomembrane system;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA918:Ro02_G34898,Ro02_G34897 | AT2G35770||AT3G63470 | scpl40; scpl40 (serine carboxypeptidase-like 40); serine-type carboxypeptidase||scpl28; scpl28 (serine carboxypeptidase-like 28); serine-type carboxypeptidase | GO:0006508|proteolysis;GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA919:Ro02_G34930,Ro02_G04429 | AT1G10070||AT3G49680 | ATBCAT-2; ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic||ATBCAT-3, BCAT3; BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic | GO:0004084|branched-chain-amino-acid transaminase activity;GO:0009507|chloroplast;GO:0003824|catalytic activity;GO:0008152|metabolic process;GO:0009081|branched chain family amino acid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA920:Ro02_G34951,Ro02_G04515 | AT4G33090 | APM1, ATAPM1; APM1 (AMINOPEPTIDASE M1); aminopeptidase | GO:0005886|plasma membrane;GO:0009926|auxin polar transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA923:Ro02_G34998,Ro02_G34999 | AT4G21380 | ARK3; ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase | GO:0004675|transmembrane receptor protein serine/threonine kinase activity;GO:0005886|plasma membrane;GO:0048544|recognition of pollen;GO:0006468|protein amino acid phosphorylation;GO:0016301|kinase activity;GO:0005773|vacuole | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA924:Ro02_G35006,Ro02_G35007 | AT2G45180||AT1G12090 | ELP; ELP (EXTENSIN-LIKE PROTEIN); lipid binding||protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | GO:0009535|chloroplast thylakoid membrane;GO:0008289|lipid binding;GO:0012505|endomembrane system;GO:0006869|lipid transport | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA925:Ro02_G35014,Ro02_G35013 | AT5G20240 | PI; PI (PISTILLATA); DNA binding / transcription factor | GO:0005737|cytoplasm;GO:0003677|DNA binding;GO:0003700|transcription factor activity;GO:0005634|nucleus;GO:0006355|regulation of transcription, DNA-dependent | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA926:Ro02_G35042,Ro02_G01387 | AT5G14320||AT3G02580 | 30S ribosomal protein S13, chloroplast (CS13)||STE1, DWF7, BUL1; STE1 (STEROL 1); C-5 sterol desaturase | GO:0009507|chloroplast;GO:0016126|sterol biosynthetic process;GO:0016132|brassinosteroid biosynthetic process;GO:0006412|translation;GO:0003735|structural constituent of ribosome;GO:0003676|nucleic acid binding;GO:0015935|small ribosomal subunit;GO:0005783|endoplasmic reticulum;GO:0009826|unidimensional cell growth;GO:0003723|RNA binding;GO:0000248|C-5 sterol desaturase activity;GO:0009941|chloroplast envelope | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA927:Ro02_G35048,Ro02_G35047 | AT4G02450 | glycine-rich protein | GO:0005886|plasma membrane;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA928:Ro02_G35059,Ro02_G35060 | AT5G07900 | mitochondrial transcription termination factor family protein / mTERF family protein | GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA929:Ro02_G35142,Ro02_G05375 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA930:Ro02_G35145,Ro02_G35143 | AT1G04520 | PDLP2; PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) | GO:0009506|plasmodesma;GO:0003674|molecular_function;GO:0010497|plasmodesmata-mediated intercellular transport;GO:0006499|N-terminal protein myristoylation | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA933:Ro02_G35173,Ro02_G35170 | AT4G29035 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: SPH1 (S-PROTEIN HOMOLOGUE 1) (TAIR:AT4G16295.1); Has 58 Blast hits to 57 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | GO:0008150|biological_process;GO:0003674|molecular_function | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA935:Ro02_G35230,Ro02_G35235 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA936:Ro02_G35232,Ro02_G10938 | AT1G75670 | DNA-directed RNA polymerase/ RNA binding | GO:0005575|cellular_component;GO:0006350|transcription;GO:0003723|RNA binding;GO:0003899|DNA-directed RNA polymerase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA937:Ro02_G35260,Ro02_G35261 | AT2G25320 | LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G25330.1); Has 59993 Blast hits to 32072 proteins in 1426 species: Archae - 584; Bacteria - 5166; Metazoa - 31897; Fungi - 4070; Plants - 2329; Viruses - 207; Other Eukaryotes - 15740 (source: NCBI BLink). | GO:0009507|chloroplast | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA940:Ro02_G35299,Ro02_G22738 | AT4G38540 | monooxygenase, putative (MO2) | GO:0008152|metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA942:Ro02_G35317,Ro02_G35316 | AT4G18550 | lipase class 3 family protein | GO:0005575|cellular_component;GO:0004806|triglyceride lipase activity;GO:0006629|lipid metabolic process | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA944:Ro02_G35357,Ro02_G24794 | AT4G12010||AT5G42130 | disease resistance protein (TIR-NBS-LRR class), putative||mitochondrial substrate carrier family protein | GO:0031224|intrinsic to membrane;GO:0009507|chloroplast;GO:0005488|binding;GO:0005743|mitochondrial inner membrane;GO:0004888|transmembrane receptor activity;GO:0005515|protein binding;GO:0006915|apoptosis;GO:0006810|transport;GO:0006839|mitochondrial transport;GO:0006952|defense response;GO:0045087|innate immune response;GO:0007165|signal transduction;GO:0005524|ATP binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA945:Ro02_G35385,Ro02_G35384 | AT5G17260 | anac086; anac086 (Arabidopsis NAC domain containing protein 86); transcription factor | GO:0045449|regulation of transcription;GO:0005575|cellular_component;GO:0003700|transcription factor activity;GO:0007275|multicellular organismal development | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA947:Ro02_G35437,Ro02_G27142 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA953:Ro02_G35526,Ro02_G35530 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA954:Ro02_G35532,Ro02_G35533 | - | - | - | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA962:Ro02_G35749,Ro02_G35748 | AT5G55350 | membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related | GO:0008150|biological_process;GO:0008415|acyltransferase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA964:Ro02_G35790,Ro02_G13684 | AT3G50930 | BCS1; BCS1 (CYTOCHROME BC1 SYNTHESIS); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | GO:0000166|nucleotide binding;GO:0016887|ATPase activity;GO:0005739|mitochondrion;GO:0005524|ATP binding;GO:0017111|nucleoside-triphosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA965:Ro02_G35801,Ro02_G35802 | AT1G65810 | tRNA-splicing endonuclease positive effector-related | GO:0008150|biological_process;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA969:Ro02_G35825,Ro02_G27238 | AT4G32360 | NADP adrenodoxin-like ferredoxin reductase | GO:0005886|plasma membrane;GO:0005488|binding;GO:0008152|metabolic process;GO:0003824|catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA970:Ro02_G35856,Ro02_G24233 | AT1G32490||AT1G49405 | integral membrane protein, putative||EMB2733, ESP3; ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding | GO:0003674|molecular_function;GO:0008380|RNA splicing;GO:0008026|ATP-dependent helicase activity;GO:0035194|posttranscriptional gene silencing by RNA;GO:0003676|nucleic acid binding;GO:0012505|endomembrane system;GO:0008150|biological_process;GO:0004386|helicase activity;GO:0004004|ATP-dependent RNA helicase activity;GO:0005524|ATP binding;GO:0016020|membrane;GO:0009793|embryonic development ending in seed dormancy | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA971:Ro02_G35905,Ro02_G35904 | AT3G50440||AT2G23610 | ATMES10, MES10; MES10 (METHYL ESTERASE 10); hydrolase/ hydrolase, acting on ester bonds / methyl jasmonate esterase||ATMES3, MES3; MES3 (METHYL ESTERASE 3); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase | GO:0016788|hydrolase activity, acting on ester bonds;GO:0005575|cellular_component;GO:0016787|hydrolase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA974:Ro02_G35998,Ro02_G05487 | AT2G15220 | secretory protein, putative | GO:0012505|endomembrane system;GO:0006952|defense response | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA978:Ro02_G36061,Ro02_G08821 | AT4G38670||AT4G38660 | thaumatin, putative||pathogenesis-related thaumatin family protein | GO:0051707|response to other organism;GO:0003674|molecular_function;GO:0031225|anchored to membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA980:Ro02_G36076,Ro02_G36075 | AT4G38700 | disease resistance-responsive family protein | GO:0012505|endomembrane system | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA983:Ro03_G02065,Ro03_G02066 | AT2G28680 | cupin family protein | GO:0008150|biological_process;GO:0005575|cellular_component;GO:0045735|nutrient reservoir activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA986:Ro03_G02165,Ro03_G02167 | AT2G37430 | zinc finger (C2H2 type) family protein (ZAT11) | GO:0010200|response to chitin;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding;GO:0003700|transcription factor activity;GO:0005622|intracellular;GO:0045449|regulation of transcription | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA987:Ro03_G02172,Ro03_G02173 | AT5G60250 | zinc finger (C3HC4-type RING finger) family protein | GO:0005515|protein binding;GO:0008270|zinc ion binding;GO:0003676|nucleic acid binding | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA988:Ro03_G02176,Ro03_G32070 | AT5G56420||AT5G53840 | F-box family protein (FBL13)||F-box family protein | GO:0003674|molecular_function;GO:0006511|ubiquitin-dependent protein catabolic process;GO:0008150|biological_process;GO:0004842|ubiquitin-protein ligase activity;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA990:Ro03_G04956,Ro03_G04960 | AT4G27010||AT5G54880 | unknown protein||DTW domain-containing protein | GO:0008150|biological_process;GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA993:Ro03_G05255,Ro03_G05254 | AT5G45870 | Bet v I allergen family protein | GO:0003674|molecular_function;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA995:Ro03_G05308,Ro03_G05307 | AT5G45700 | NLI interacting factor (NIF) family protein | GO:0016791|phosphatase activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA996:Ro03_G05332,Ro03_G33082 | AT5G45670||AT1G29670 | GDSL-motif lipase/hydrolase family protein | GO:0009507|chloroplast;GO:0006629|lipid metabolic process;GO:0048046|apoplast;GO:0012505|endomembrane system;GO:0004091|carboxylesterase activity;GO:0016788|hydrolase activity, acting on ester bonds;GO:0005618|cell wall | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA997:Ro03_G05337,Ro03_G33087 | AT5G45650 | subtilase family protein | GO:0006508|proteolysis;GO:0012505|endomembrane system;GO:0042802|identical protein binding;GO:0004252|serine-type endopeptidase activity;GO:0043086|negative regulation of catalytic activity | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA998:Ro03_G05741,Ro03_G05743 | AT1G79360||AT1G16390 | ATOCT2; ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter||ATOCT3; ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter | GO:0005351|sugar:hydrogen symporter activity;GO:0006811|ion transport;GO:0016021|integral to membrane;GO:0015144|carbohydrate transmembrane transporter activity;GO:0016020|membrane | - | 2 | 1 | Rubus occidentalis | Roccidentalis | |||
| TA999:Ro03_G05761,Ro03_G05762 | AT3G12700 | aspartyl protease family protein | GO:0006508|proteolysis;GO:0005575|cellular_component | - | 2 | 1 | Rubus occidentalis | Roccidentalis |